BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00023718
         (2035 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010657210.1| PREDICTED: DNA repair protein RAD16 [Vitis v...   410   e-111
emb|CBI28814.3| unnamed protein product [Vitis vinifera]              410   e-111
gb|KJB30319.1| hypothetical protein B456_005G137100 [Gossypium r...   399   e-108
gb|KJB30318.1| hypothetical protein B456_005G137100 [Gossypium r...   399   e-108
gb|KJB30317.1| hypothetical protein B456_005G137100 [Gossypium r...   399   e-108
ref|XP_012478613.1| PREDICTED: DNA repair protein RAD16 isoform ...   399   e-108
gb|KJB30315.1| hypothetical protein B456_005G137100 [Gossypium r...   399   e-108
ref|XP_012478612.1| PREDICTED: DNA repair protein RAD16 isoform ...   399   e-108
gb|KHG22444.1| ATP-dependent helicase rhp16 [Gossypium arboreum]      398   e-108
ref|XP_004240150.1| PREDICTED: DNA repair protein RAD16-like [So...   398   e-107
ref|XP_007046389.1| Helicase protein with RING/U-box domain isof...   396   e-107
ref|XP_007046387.1| Helicase protein with RING/U-box domain isof...   396   e-107
ref|XP_007046386.1| Helicase protein with RING/U-box domain isof...   396   e-107
ref|XP_007046385.1| Helicase protein with RING/U-box domain isof...   396   e-107
ref|XP_006342255.1| PREDICTED: DNA repair protein RAD16-like [So...   394   e-106
ref|XP_009627930.1| PREDICTED: DNA repair protein RAD16 [Nicotia...   389   e-105
ref|XP_004248914.1| PREDICTED: DNA repair protein RAD16-like [So...   388   e-104
ref|XP_009795276.1| PREDICTED: DNA repair protein RAD16 isoform ...   387   e-104
ref|XP_009795273.1| PREDICTED: DNA repair protein RAD16 isoform ...   387   e-104
ref|XP_011047250.1| PREDICTED: DNA repair protein RAD16 isoform ...   387   e-104

>ref|XP_010657210.1| PREDICTED: DNA repair protein RAD16 [Vitis vinifera]
          Length = 936

 Score =  410 bits (1053), Expect = e-111
 Identities = 194/238 (81%), Positives = 214/238 (89%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     IKDRRSNT +AVLALES YKWALSGTPLQNRVGELYSL+RFL+I+PYSY
Sbjct: 456  WDRIILDEAHFIKDRRSNTAKAVLALESEYKWALSGTPLQNRVGELYSLIRFLRIIPYSY 515

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS ECP C H  VRHFCWWNKY+ATPIQA GNIG GQRAMILLKHK
Sbjct: 516  YLCKDCDCRTLDYSSSTECPNCEHKSVRHFCWWNKYVATPIQAMGNIGEGQRAMILLKHK 575

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI+SLRRDT+DIKEEDYY+SLYNESQAQFNTYV  GT+
Sbjct: 576  ILKSILLRRTKKGRAADLALPPRIVSLRRDTLDIKEEDYYQSLYNESQAQFNTYVEAGTL 635

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYSRT+  R G++VD +N EQVCG+C+DP+EDPV
Sbjct: 636  MNNYAHIFDLLTRLRQAVDHPYLVVYSRTSTLRAGNIVDTENGEQVCGICNDPLEDPV 693



 Score =  354 bits (909), Expect = 1e-94
 Identities = 201/386 (52%), Positives = 241/386 (62%), Gaps = 10/386 (2%)
 Frame = -2

Query: 1809 KRRKGWLKNKRGQSSNKRVTLXXXXXXXXXXDGTNEEEQEDHAA-EIDFXXXXXXXXXXX 1633
            KRRK   + KRG+   KR  +          +  + E QED    EIDF           
Sbjct: 87   KRRKVGKRKKRGRQRCKREEMRGEEKEKELGNVQDSEVQEDEGVLEIDFLGLQLGRVGHL 146

Query: 1632 KRNR---------ETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLI 1480
               +         + +PTLM              N T+D DL++QNE+ +ET++APSDLI
Sbjct: 147  GSKKNDKKRKKSGDLKPTLMWEIWEEEHDKWIDMNLTEDVDLDHQNELVSETADAPSDLI 206

Query: 1479 VPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILT 1300
            +PLLRYQKEWLAWALKQEES  +GGILADEMGMGKTIQAIALV +KREI Q   E  ++ 
Sbjct: 207  MPLLRYQKEWLAWALKQEESTTRGGILADEMGMGKTIQAIALVLSKREISQKICEPKVVL 266

Query: 1299 XXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEY 1120
                     PK+KGTLVICPVVAV+QWVNEI RFT KGS KVLVYHG NRGK++ QFSEY
Sbjct: 267  RAPGSSMDLPKIKGTLVICPVVAVLQWVNEIGRFTVKGSTKVLVYHGANRGKSIGQFSEY 326

Query: 1119 DFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXX 940
            DFVITTYSIVEAEYRKNVMPPKQKC +C K FY  K+ IHL YFCGPDA+          
Sbjct: 327  DFVITTYSIVEAEYRKNVMPPKQKCVFCRKLFYPHKMSIHLRYFCGPDAIKTDKQSKQKK 386

Query: 939  XXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGTSSTMEKLADAEQ 760
               K   ++S   +  D G  GE + +KRK    K +K+   +K +G   ++E  A  EQ
Sbjct: 387  KEPKLELKIS--DSVEDNG--GECEGEKRKKDQPKPRKNYKPKKHMGFGPSIENSAVDEQ 442

Query: 759  GLPTRKSILHSVRWDRIILDEAHYYK 682
               TRKSILHSV+WDRIILDEAH+ K
Sbjct: 443  STSTRKSILHSVKWDRIILDEAHFIK 468


>emb|CBI28814.3| unnamed protein product [Vitis vinifera]
          Length = 964

 Score =  410 bits (1053), Expect = e-111
 Identities = 194/238 (81%), Positives = 214/238 (89%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     IKDRRSNT +AVLALES YKWALSGTPLQNRVGELYSL+RFL+I+PYSY
Sbjct: 484  WDRIILDEAHFIKDRRSNTAKAVLALESEYKWALSGTPLQNRVGELYSLIRFLRIIPYSY 543

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS ECP C H  VRHFCWWNKY+ATPIQA GNIG GQRAMILLKHK
Sbjct: 544  YLCKDCDCRTLDYSSSTECPNCEHKSVRHFCWWNKYVATPIQAMGNIGEGQRAMILLKHK 603

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI+SLRRDT+DIKEEDYY+SLYNESQAQFNTYV  GT+
Sbjct: 604  ILKSILLRRTKKGRAADLALPPRIVSLRRDTLDIKEEDYYQSLYNESQAQFNTYVEAGTL 663

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYSRT+  R G++VD +N EQVCG+C+DP+EDPV
Sbjct: 664  MNNYAHIFDLLTRLRQAVDHPYLVVYSRTSTLRAGNIVDTENGEQVCGICNDPLEDPV 721



 Score =  325 bits (832), Expect = 1e-85
 Identities = 192/386 (49%), Positives = 226/386 (58%), Gaps = 10/386 (2%)
 Frame = -2

Query: 1809 KRRKGWLKNKRGQSSNKRVTLXXXXXXXXXXDGTNEEEQEDHAA-EIDFXXXXXXXXXXX 1633
            KRRK   + KRG+   KR  +          +  + E QED    EIDF           
Sbjct: 157  KRRKVGKRKKRGRQRCKREEMRGEEKEKELGNVQDSEVQEDEGVLEIDFLGLQLGRVGHL 216

Query: 1632 KRNR---------ETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLI 1480
               +         + +PTLM              N T+D DL++QNE+ +ET++APSDLI
Sbjct: 217  GSKKNDKKRKKSGDLKPTLMWEIWEEEHDKWIDMNLTEDVDLDHQNELVSETADAPSDLI 276

Query: 1479 VPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILT 1300
            +PLLRYQKEWLAWALKQEES  +GGILADEMGMGKTIQAIALV +KREI Q         
Sbjct: 277  MPLLRYQKEWLAWALKQEESTTRGGILADEMGMGKTIQAIALVLSKREISQKIC------ 330

Query: 1299 XXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEY 1120
                          TLVICPVVAV+QWVNEI RFT KGS KVLVYHG NRGK++ QFSEY
Sbjct: 331  --------------TLVICPVVAVLQWVNEIGRFTVKGSTKVLVYHGANRGKSIGQFSEY 376

Query: 1119 DFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXX 940
            DFVITTYSIVEAEYRKNVMPPKQKC +C K FY  K+ IHL YFCGPDA+          
Sbjct: 377  DFVITTYSIVEAEYRKNVMPPKQKCVFCRKLFYPHKMSIHLRYFCGPDAIK--------- 427

Query: 939  XXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGTSSTMEKLADAEQ 760
                   + SKQK    K +    DS+ +             +K +G   ++E  A  EQ
Sbjct: 428  -----TDKQSKQKKKEPKLELKISDSNYK------------PKKHMGFGPSIENSAVDEQ 470

Query: 759  GLPTRKSILHSVRWDRIILDEAHYYK 682
               TRKSILHSV+WDRIILDEAH+ K
Sbjct: 471  STSTRKSILHSVKWDRIILDEAHFIK 496


>gb|KJB30319.1| hypothetical protein B456_005G137100 [Gossypium raimondii]
          Length = 767

 Score =  399 bits (1025), Expect = e-108
 Identities = 192/240 (80%), Positives = 211/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 287  WERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 346

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +CP CPHN VRHFCWWNKY+ATPIQ +GN   G+RAMILLKHK
Sbjct: 347  YLCKDCDCRTLDYSSSTQCPNCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHK 406

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRIISLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 407  ILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 466

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R G+MV+ D  + EQVCG+C+DP EDPV
Sbjct: 467  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNMVNGDRNDDEQVCGICNDPAEDPV 526



 Score =  329 bits (844), Expect = 5e-87
 Identities = 170/292 (58%), Positives = 204/292 (69%)
 Frame = -2

Query: 1557 NYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMG 1378
            N T D DL+ QN +  ETS+A SDLI+PLLRYQKEWLAWALKQE+S  KGGILADEMGMG
Sbjct: 16   NLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMG 75

Query: 1377 KTIQAIALVHAKREICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERF 1198
            KTIQAIALV AKR++    GE N+ +         P+++ TLVICPVVAV QWV+EI+RF
Sbjct: 76   KTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRF 135

Query: 1197 TSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYE 1018
            TS+GS KVLVYHG NRGKN+ QFSEYDFVITTYSIVEAEYRK +MPPK+KC +CGKSF++
Sbjct: 136  TSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQ 195

Query: 1017 GKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACR 838
             KL +HL Y+CGPDA+                R+  K    S K  A  +++D RK   +
Sbjct: 196  KKLSVHLKYYCGPDAIKTENQSKQE-------RKKPKSMFKSGKKHASNYEADSRKRGSK 248

Query: 837  KAKKSESEEKDLGTSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
            K  K   E+KD       E  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 249  KKAKHNREDKDRDFEFD-ETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVK 299


>gb|KJB30318.1| hypothetical protein B456_005G137100 [Gossypium raimondii]
          Length = 840

 Score =  399 bits (1025), Expect = e-108
 Identities = 192/240 (80%), Positives = 211/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 360  WERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 419

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +CP CPHN VRHFCWWNKY+ATPIQ +GN   G+RAMILLKHK
Sbjct: 420  YLCKDCDCRTLDYSSSTQCPNCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHK 479

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRIISLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 480  ILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 539

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R G+MV+ D  + EQVCG+C+DP EDPV
Sbjct: 540  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNMVNGDRNDDEQVCGICNDPAEDPV 599



 Score =  330 bits (845), Expect = 4e-87
 Identities = 179/339 (52%), Positives = 218/339 (64%), Gaps = 2/339 (0%)
 Frame = -2

Query: 1692 EDHAAEIDFXXXXXXXXXXXKRNRETRP--TLMXXXXXXXXXXXXXENYTKDFDLENQNE 1519
            E + ++ DF           KR ++ R    LM             EN T D DL+ QN 
Sbjct: 42   EQNESQFDFNVSTAKKRNNTKRKKKARSGQPLMWEVWEQEHEKWIDENLTVDVDLDQQNA 101

Query: 1518 MAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKR 1339
            +  ETS+A SDLI+PLLRYQKEWLAWALKQE+S  KGGILADEMGMGKTIQAIALV AKR
Sbjct: 102  VITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKR 161

Query: 1338 EICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHG 1159
            ++    GE N+ +         P+++ TLVICPVVAV QWV+EI+RFTS+GS KVLVYHG
Sbjct: 162  QVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHG 221

Query: 1158 TNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGP 979
             NRGKN+ QFSEYDFVITTYSIVEAEYRK +MPPK+KC +CGKSF++ KL +HL Y+CGP
Sbjct: 222  ANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGP 281

Query: 978  DAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLG 799
            DA+                R+  K    S K  A  +++D RK   +K  K   E+KD  
Sbjct: 282  DAIKTENQSKQE-------RKKPKSMFKSGKKHASNYEADSRKRGSKKKAKHNREDKDRD 334

Query: 798  TSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
                 E  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 335  FEFD-ETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVK 372


>gb|KJB30317.1| hypothetical protein B456_005G137100 [Gossypium raimondii]
          Length = 926

 Score =  399 bits (1025), Expect = e-108
 Identities = 192/240 (80%), Positives = 211/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 446  WERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 505

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +CP CPHN VRHFCWWNKY+ATPIQ +GN   G+RAMILLKHK
Sbjct: 506  YLCKDCDCRTLDYSSSTQCPNCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHK 565

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRIISLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 566  ILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 625

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R G+MV+ D  + EQVCG+C+DP EDPV
Sbjct: 626  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNMVNGDRNDDEQVCGICNDPAEDPV 685



 Score =  330 bits (845), Expect = 4e-87
 Identities = 179/339 (52%), Positives = 218/339 (64%), Gaps = 2/339 (0%)
 Frame = -2

Query: 1692 EDHAAEIDFXXXXXXXXXXXKRNRETRP--TLMXXXXXXXXXXXXXENYTKDFDLENQNE 1519
            E + ++ DF           KR ++ R    LM             EN T D DL+ QN 
Sbjct: 128  EQNESQFDFNVSTAKKRNNTKRKKKARSGQPLMWEVWEQEHEKWIDENLTVDVDLDQQNA 187

Query: 1518 MAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKR 1339
            +  ETS+A SDLI+PLLRYQKEWLAWALKQE+S  KGGILADEMGMGKTIQAIALV AKR
Sbjct: 188  VITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKR 247

Query: 1338 EICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHG 1159
            ++    GE N+ +         P+++ TLVICPVVAV QWV+EI+RFTS+GS KVLVYHG
Sbjct: 248  QVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHG 307

Query: 1158 TNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGP 979
             NRGKN+ QFSEYDFVITTYSIVEAEYRK +MPPK+KC +CGKSF++ KL +HL Y+CGP
Sbjct: 308  ANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGP 367

Query: 978  DAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLG 799
            DA+                R+  K    S K  A  +++D RK   +K  K   E+KD  
Sbjct: 368  DAIKTENQSKQE-------RKKPKSMFKSGKKHASNYEADSRKRGSKKKAKHNREDKDRD 420

Query: 798  TSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
                 E  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 421  FEFD-ETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVK 458


>ref|XP_012478613.1| PREDICTED: DNA repair protein RAD16 isoform X2 [Gossypium raimondii]
            gi|763763062|gb|KJB30316.1| hypothetical protein
            B456_005G137100 [Gossypium raimondii]
          Length = 884

 Score =  399 bits (1025), Expect = e-108
 Identities = 192/240 (80%), Positives = 211/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 404  WERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 463

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +CP CPHN VRHFCWWNKY+ATPIQ +GN   G+RAMILLKHK
Sbjct: 464  YLCKDCDCRTLDYSSSTQCPNCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHK 523

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRIISLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 524  ILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 583

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R G+MV+ D  + EQVCG+C+DP EDPV
Sbjct: 584  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNMVNGDRNDDEQVCGICNDPAEDPV 643



 Score =  330 bits (845), Expect = 4e-87
 Identities = 179/339 (52%), Positives = 218/339 (64%), Gaps = 2/339 (0%)
 Frame = -2

Query: 1692 EDHAAEIDFXXXXXXXXXXXKRNRETRP--TLMXXXXXXXXXXXXXENYTKDFDLENQNE 1519
            E + ++ DF           KR ++ R    LM             EN T D DL+ QN 
Sbjct: 86   EQNESQFDFNVSTAKKRNNTKRKKKARSGQPLMWEVWEQEHEKWIDENLTVDVDLDQQNA 145

Query: 1518 MAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKR 1339
            +  ETS+A SDLI+PLLRYQKEWLAWALKQE+S  KGGILADEMGMGKTIQAIALV AKR
Sbjct: 146  VITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKR 205

Query: 1338 EICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHG 1159
            ++    GE N+ +         P+++ TLVICPVVAV QWV+EI+RFTS+GS KVLVYHG
Sbjct: 206  QVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHG 265

Query: 1158 TNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGP 979
             NRGKN+ QFSEYDFVITTYSIVEAEYRK +MPPK+KC +CGKSF++ KL +HL Y+CGP
Sbjct: 266  ANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGP 325

Query: 978  DAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLG 799
            DA+                R+  K    S K  A  +++D RK   +K  K   E+KD  
Sbjct: 326  DAIKTENQSKQE-------RKKPKSMFKSGKKHASNYEADSRKRGSKKKAKHNREDKDRD 378

Query: 798  TSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
                 E  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 379  FEFD-ETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVK 416


>gb|KJB30315.1| hypothetical protein B456_005G137100 [Gossypium raimondii]
          Length = 812

 Score =  399 bits (1025), Expect = e-108
 Identities = 192/240 (80%), Positives = 211/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 405  WERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 464

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +CP CPHN VRHFCWWNKY+ATPIQ +GN   G+RAMILLKHK
Sbjct: 465  YLCKDCDCRTLDYSSSTQCPNCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHK 524

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRIISLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 525  ILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 584

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R G+MV+ D  + EQVCG+C+DP EDPV
Sbjct: 585  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNMVNGDRNDDEQVCGICNDPAEDPV 644



 Score =  330 bits (845), Expect = 4e-87
 Identities = 179/339 (52%), Positives = 218/339 (64%), Gaps = 2/339 (0%)
 Frame = -2

Query: 1692 EDHAAEIDFXXXXXXXXXXXKRNRETRP--TLMXXXXXXXXXXXXXENYTKDFDLENQNE 1519
            E + ++ DF           KR ++ R    LM             EN T D DL+ QN 
Sbjct: 87   EQNESQFDFNVSTAKKRNNTKRKKKARSGQPLMWEVWEQEHEKWIDENLTVDVDLDQQNA 146

Query: 1518 MAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKR 1339
            +  ETS+A SDLI+PLLRYQKEWLAWALKQE+S  KGGILADEMGMGKTIQAIALV AKR
Sbjct: 147  VITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKR 206

Query: 1338 EICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHG 1159
            ++    GE N+ +         P+++ TLVICPVVAV QWV+EI+RFTS+GS KVLVYHG
Sbjct: 207  QVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHG 266

Query: 1158 TNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGP 979
             NRGKN+ QFSEYDFVITTYSIVEAEYRK +MPPK+KC +CGKSF++ KL +HL Y+CGP
Sbjct: 267  ANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGP 326

Query: 978  DAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLG 799
            DA+                R+  K    S K  A  +++D RK   +K  K   E+KD  
Sbjct: 327  DAIKTENQSKQE-------RKKPKSMFKSGKKHASNYEADSRKRGSKKKAKHNREDKDRD 379

Query: 798  TSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
                 E  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 380  FEFD-ETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVK 417


>ref|XP_012478612.1| PREDICTED: DNA repair protein RAD16 isoform X1 [Gossypium raimondii]
            gi|763763058|gb|KJB30312.1| hypothetical protein
            B456_005G137100 [Gossypium raimondii]
          Length = 885

 Score =  399 bits (1025), Expect = e-108
 Identities = 192/240 (80%), Positives = 211/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 405  WERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 464

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +CP CPHN VRHFCWWNKY+ATPIQ +GN   G+RAMILLKHK
Sbjct: 465  YLCKDCDCRTLDYSSSTQCPNCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHK 524

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRIISLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 525  ILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 584

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R G+MV+ D  + EQVCG+C+DP EDPV
Sbjct: 585  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNMVNGDRNDDEQVCGICNDPAEDPV 644



 Score =  330 bits (845), Expect = 4e-87
 Identities = 179/339 (52%), Positives = 218/339 (64%), Gaps = 2/339 (0%)
 Frame = -2

Query: 1692 EDHAAEIDFXXXXXXXXXXXKRNRETRP--TLMXXXXXXXXXXXXXENYTKDFDLENQNE 1519
            E + ++ DF           KR ++ R    LM             EN T D DL+ QN 
Sbjct: 87   EQNESQFDFNVSTAKKRNNTKRKKKARSGQPLMWEVWEQEHEKWIDENLTVDVDLDQQNA 146

Query: 1518 MAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKR 1339
            +  ETS+A SDLI+PLLRYQKEWLAWALKQE+S  KGGILADEMGMGKTIQAIALV AKR
Sbjct: 147  VITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKR 206

Query: 1338 EICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHG 1159
            ++    GE N+ +         P+++ TLVICPVVAV QWV+EI+RFTS+GS KVLVYHG
Sbjct: 207  QVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHG 266

Query: 1158 TNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGP 979
             NRGKN+ QFSEYDFVITTYSIVEAEYRK +MPPK+KC +CGKSF++ KL +HL Y+CGP
Sbjct: 267  ANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGP 326

Query: 978  DAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLG 799
            DA+                R+  K    S K  A  +++D RK   +K  K   E+KD  
Sbjct: 327  DAIKTENQSKQE-------RKKPKSMFKSGKKHASNYEADSRKRGSKKKAKHNREDKDRD 379

Query: 798  TSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
                 E  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 380  FEFD-ETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVK 417


>gb|KHG22444.1| ATP-dependent helicase rhp16 [Gossypium arboreum]
          Length = 885

 Score =  398 bits (1023), Expect = e-108
 Identities = 191/240 (79%), Positives = 212/240 (88%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 405  WERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 464

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDC+TL+YSSS +CPKCPHN VRHFCWWNKY+ATPIQ +GN   G+RAMILLKHK
Sbjct: 465  YLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHK 524

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRIISLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 525  ILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 584

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R G++V+ D  + EQVCG+C+DP EDPV
Sbjct: 585  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPV 644



 Score =  332 bits (850), Expect = 1e-87
 Identities = 180/339 (53%), Positives = 219/339 (64%), Gaps = 2/339 (0%)
 Frame = -2

Query: 1692 EDHAAEIDFXXXXXXXXXXXKRNRETRP--TLMXXXXXXXXXXXXXENYTKDFDLENQNE 1519
            E + ++ DF           KR ++ R    LM             EN T D DL+ QN 
Sbjct: 87   EQNESQFDFNVSTAKKRNNTKRKKKARSGQPLMWEVWEQEHEKWIDENLTVDVDLDQQNA 146

Query: 1518 MAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKR 1339
            +  ETS+A SDLI+PLLRYQKEWLAWALKQE+S  KGGILADEMGMGKTIQAIALV AKR
Sbjct: 147  VITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKR 206

Query: 1338 EICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHG 1159
            ++    GE N+ +         P+++ TLVICPVVAV QWV+EI+RFTS+GS KVLVYHG
Sbjct: 207  QVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHG 266

Query: 1158 TNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGP 979
             NRGKN+ QFSEYDFVITTYSIVEAEYRK +MPPK+KC +CGKSF++ KL +HL Y+CGP
Sbjct: 267  ANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGP 326

Query: 978  DAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLG 799
            DA+                R+  K    S K  A  +++D RK A +K  K   E+KD  
Sbjct: 327  DAIKTENQSKQE-------RKKPKSMFKSGKKHASNYEADSRKRASKKKAKHNKEDKDRD 379

Query: 798  TSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
                 E  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 380  FEFD-ETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVK 417


>ref|XP_004240150.1| PREDICTED: DNA repair protein RAD16-like [Solanum lycopersicum]
          Length = 889

 Score =  398 bits (1022), Expect = e-107
 Identities = 189/238 (79%), Positives = 210/238 (88%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRRSNTTRA+LALES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 411  WNRIILDEAHYVKDRRSNTTRAILALESSYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 470

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            YFCKDCDCR L+YSSS ECP CPH  +RHFCWWN+YIA+PIQ  GN G G+ AM+LLKHK
Sbjct: 471  YFCKDCDCRVLDYSSS-ECPHCPHKSIRHFCWWNRYIASPIQNQGNRGTGRDAMVLLKHK 529

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI++LR+D++D+KEEDYY SLYNESQAQFNTY+  GT+
Sbjct: 530  ILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTL 589

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TAL R GS  DA + EQ+CGLCHDPVEDPV
Sbjct: 590  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARRGSTNDAGSVEQLCGLCHDPVEDPV 647



 Score =  337 bits (864), Expect = 2e-89
 Identities = 175/316 (55%), Positives = 214/316 (67%)
 Frame = -2

Query: 1629 RNRETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEW 1450
            +N++ RPTL+             ENY  D    +Q+E+  ET++ PSDLI+PLLRYQKEW
Sbjct: 118  KNQKKRPTLLWEIWEEENDSWMAENYPNDPHFNSQDELVTETAQPPSDLIMPLLRYQKEW 177

Query: 1449 LAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILTXXXXXXXXXP 1270
            L WALKQEES  +GGILADEMGMGKT+QAIALV AKREI QA    ++L+         P
Sbjct: 178  LTWALKQEESTARGGILADEMGMGKTVQAIALVLAKREIGQAISGSSLLSPAPCTSQQLP 237

Query: 1269 KVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIV 1090
             +KG+LVICPVVAVIQWV+EI+RFT+KGSNK+LVYHGTNR KN+ +F+EYDFVITTYS V
Sbjct: 238  VMKGSLVICPVVAVIQWVSEIDRFTTKGSNKILVYHGTNRVKNIDKFAEYDFVITTYSTV 297

Query: 1089 EAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMS 910
            EAEYRKNVMPPK+KCQWCGKSFYE KL +H  YFCGPDAV                ++ S
Sbjct: 298  EAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQKYFCGPDAVKTAKQS----------KQQS 347

Query: 909  KQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGTSSTMEKLADAEQGLPTRKSILH 730
            K      K K    + D +    ++      + K    +  ++ LA A Q + TRKSILH
Sbjct: 348  KPGGKPSKLKKDHIEGDSKINTGKRGSGKGIKRKSEADAGCVDDLAFAGQDMSTRKSILH 407

Query: 729  SVRWDRIILDEAHYYK 682
            SV+W+RIILDEAHY K
Sbjct: 408  SVKWNRIILDEAHYVK 423


>ref|XP_007046389.1| Helicase protein with RING/U-box domain isoform 5 [Theobroma cacao]
            gi|508710324|gb|EOY02221.1| Helicase protein with
            RING/U-box domain isoform 5 [Theobroma cacao]
          Length = 716

 Score =  396 bits (1018), Expect = e-107
 Identities = 191/240 (79%), Positives = 209/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 354  WERIILDEAHFVKDRRCNTAKAVLTLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 413

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +C  CPHN VRHFCWWNKY+ATPIQ  GN   G+RAMILLKHK
Sbjct: 414  YLCKDCDCRTLDYSSSTQCSNCPHNSVRHFCWWNKYVATPIQQCGNGEIGKRAMILLKHK 473

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRI+SLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 474  ILKNIVLRRTKKGRAADLALPPRIVSLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 533

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R GS+V++D  N EQVCG+CHDP E+PV
Sbjct: 534  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTASQRAGSIVNSDKNNDEQVCGICHDPTEEPV 593



 Score =  341 bits (875), Expect = 1e-90
 Identities = 187/348 (53%), Positives = 226/348 (64%), Gaps = 5/348 (1%)
 Frame = -2

Query: 1710 TNEEEQ--EDHAAEIDFXXXXXXXXXXXKRNRE---TRPTLMXXXXXXXXXXXXXENYTK 1546
            +N E+Q  E +  + DF           KR ++   + P LM             EN T 
Sbjct: 27   SNAEQQSTEQNEGDYDFYVSSRKKRNNVKRKKKKARSGPLLMWEVWEQEHEKWIDENLTA 86

Query: 1545 DFDLENQNEMAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQ 1366
            D DL+ QN +  ETSEA  DLI+PLLRYQKEWLAWALKQE+SA KGGILADEMGMGKTIQ
Sbjct: 87   DVDLDQQNAVITETSEASPDLIIPLLRYQKEWLAWALKQEDSATKGGILADEMGMGKTIQ 146

Query: 1365 AIALVHAKREICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKG 1186
            AIALV AKRE+ +   E N  +         P ++GTLVICPVVAV QWV+EI+RFTS+G
Sbjct: 147  AIALVLAKRELLRTIAEPNGSSLTPSSSTDLPMIRGTLVICPVVAVSQWVSEIDRFTSRG 206

Query: 1185 SNKVLVYHGTNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLL 1006
            S KVLVYHGTNRGKN+ QF +YDFVITTYSIVEAEYRK +MPPK+KC +CGKSFY+ KL 
Sbjct: 207  STKVLVYHGTNRGKNIKQFLDYDFVITTYSIVEAEYRKYMMPPKEKCPYCGKSFYQKKLS 266

Query: 1005 IHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKK 826
            +HL Y+CGPDAV                R+ SK    SD+     +++D RKGA +K  K
Sbjct: 267  VHLKYYCGPDAVKTEKQSKQE-------RKKSKSVFKSDREHTSNYETDMRKGAGKKKSK 319

Query: 825  SESEEKDLGTSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
               E+KDL      +  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 320  HNEEDKDLDFEFD-DTFAGVEHSLPQGKSLLHSVKWERIILDEAHFVK 366


>ref|XP_007046387.1| Helicase protein with RING/U-box domain isoform 3 [Theobroma cacao]
            gi|508710322|gb|EOY02219.1| Helicase protein with
            RING/U-box domain isoform 3 [Theobroma cacao]
          Length = 869

 Score =  396 bits (1018), Expect = e-107
 Identities = 191/240 (79%), Positives = 209/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 414  WERIILDEAHFVKDRRCNTAKAVLTLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 473

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +C  CPHN VRHFCWWNKY+ATPIQ  GN   G+RAMILLKHK
Sbjct: 474  YLCKDCDCRTLDYSSSTQCSNCPHNSVRHFCWWNKYVATPIQQCGNGEIGKRAMILLKHK 533

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRI+SLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 534  ILKNIVLRRTKKGRAADLALPPRIVSLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 593

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R GS+V++D  N EQVCG+CHDP E+PV
Sbjct: 594  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTASQRAGSIVNSDKNNDEQVCGICHDPTEEPV 653



 Score =  341 bits (875), Expect = 1e-90
 Identities = 187/348 (53%), Positives = 226/348 (64%), Gaps = 5/348 (1%)
 Frame = -2

Query: 1710 TNEEEQ--EDHAAEIDFXXXXXXXXXXXKRNRE---TRPTLMXXXXXXXXXXXXXENYTK 1546
            +N E+Q  E +  + DF           KR ++   + P LM             EN T 
Sbjct: 87   SNAEQQSTEQNEGDYDFYVSSRKKRNNVKRKKKKARSGPLLMWEVWEQEHEKWIDENLTA 146

Query: 1545 DFDLENQNEMAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQ 1366
            D DL+ QN +  ETSEA  DLI+PLLRYQKEWLAWALKQE+SA KGGILADEMGMGKTIQ
Sbjct: 147  DVDLDQQNAVITETSEASPDLIIPLLRYQKEWLAWALKQEDSATKGGILADEMGMGKTIQ 206

Query: 1365 AIALVHAKREICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKG 1186
            AIALV AKRE+ +   E N  +         P ++GTLVICPVVAV QWV+EI+RFTS+G
Sbjct: 207  AIALVLAKRELLRTIAEPNGSSLTPSSSTDLPMIRGTLVICPVVAVSQWVSEIDRFTSRG 266

Query: 1185 SNKVLVYHGTNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLL 1006
            S KVLVYHGTNRGKN+ QF +YDFVITTYSIVEAEYRK +MPPK+KC +CGKSFY+ KL 
Sbjct: 267  STKVLVYHGTNRGKNIKQFLDYDFVITTYSIVEAEYRKYMMPPKEKCPYCGKSFYQKKLS 326

Query: 1005 IHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKK 826
            +HL Y+CGPDAV                R+ SK    SD+     +++D RKGA +K  K
Sbjct: 327  VHLKYYCGPDAVKTEKQSKQE-------RKKSKSVFKSDREHTSNYETDMRKGAGKKKSK 379

Query: 825  SESEEKDLGTSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
               E+KDL      +  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 380  HNEEDKDLDFEFD-DTFAGVEHSLPQGKSLLHSVKWERIILDEAHFVK 426


>ref|XP_007046386.1| Helicase protein with RING/U-box domain isoform 2 [Theobroma cacao]
            gi|590701383|ref|XP_007046388.1| Helicase protein with
            RING/U-box domain isoform 2 [Theobroma cacao]
            gi|508710321|gb|EOY02218.1| Helicase protein with
            RING/U-box domain isoform 2 [Theobroma cacao]
            gi|508710323|gb|EOY02220.1| Helicase protein with
            RING/U-box domain isoform 2 [Theobroma cacao]
          Length = 836

 Score =  396 bits (1018), Expect = e-107
 Identities = 191/240 (79%), Positives = 209/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 354  WERIILDEAHFVKDRRCNTAKAVLTLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 413

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +C  CPHN VRHFCWWNKY+ATPIQ  GN   G+RAMILLKHK
Sbjct: 414  YLCKDCDCRTLDYSSSTQCSNCPHNSVRHFCWWNKYVATPIQQCGNGEIGKRAMILLKHK 473

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRI+SLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 474  ILKNIVLRRTKKGRAADLALPPRIVSLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 533

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R GS+V++D  N EQVCG+CHDP E+PV
Sbjct: 534  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTASQRAGSIVNSDKNNDEQVCGICHDPTEEPV 593



 Score =  341 bits (875), Expect = 1e-90
 Identities = 187/348 (53%), Positives = 226/348 (64%), Gaps = 5/348 (1%)
 Frame = -2

Query: 1710 TNEEEQ--EDHAAEIDFXXXXXXXXXXXKRNRE---TRPTLMXXXXXXXXXXXXXENYTK 1546
            +N E+Q  E +  + DF           KR ++   + P LM             EN T 
Sbjct: 27   SNAEQQSTEQNEGDYDFYVSSRKKRNNVKRKKKKARSGPLLMWEVWEQEHEKWIDENLTA 86

Query: 1545 DFDLENQNEMAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQ 1366
            D DL+ QN +  ETSEA  DLI+PLLRYQKEWLAWALKQE+SA KGGILADEMGMGKTIQ
Sbjct: 87   DVDLDQQNAVITETSEASPDLIIPLLRYQKEWLAWALKQEDSATKGGILADEMGMGKTIQ 146

Query: 1365 AIALVHAKREICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKG 1186
            AIALV AKRE+ +   E N  +         P ++GTLVICPVVAV QWV+EI+RFTS+G
Sbjct: 147  AIALVLAKRELLRTIAEPNGSSLTPSSSTDLPMIRGTLVICPVVAVSQWVSEIDRFTSRG 206

Query: 1185 SNKVLVYHGTNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLL 1006
            S KVLVYHGTNRGKN+ QF +YDFVITTYSIVEAEYRK +MPPK+KC +CGKSFY+ KL 
Sbjct: 207  STKVLVYHGTNRGKNIKQFLDYDFVITTYSIVEAEYRKYMMPPKEKCPYCGKSFYQKKLS 266

Query: 1005 IHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKK 826
            +HL Y+CGPDAV                R+ SK    SD+     +++D RKGA +K  K
Sbjct: 267  VHLKYYCGPDAVKTEKQSKQE-------RKKSKSVFKSDREHTSNYETDMRKGAGKKKSK 319

Query: 825  SESEEKDLGTSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
               E+KDL      +  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 320  HNEEDKDLDFEFD-DTFAGVEHSLPQGKSLLHSVKWERIILDEAHFVK 366


>ref|XP_007046385.1| Helicase protein with RING/U-box domain isoform 1 [Theobroma cacao]
            gi|508710320|gb|EOY02217.1| Helicase protein with
            RING/U-box domain isoform 1 [Theobroma cacao]
          Length = 896

 Score =  396 bits (1018), Expect = e-107
 Identities = 191/240 (79%), Positives = 209/240 (87%), Gaps = 7/240 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT +AVL LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 414  WERIILDEAHFVKDRRCNTAKAVLTLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 473

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            Y CKDCDCRTL+YSSS +C  CPHN VRHFCWWNKY+ATPIQ  GN   G+RAMILLKHK
Sbjct: 474  YLCKDCDCRTLDYSSSTQCSNCPHNSVRHFCWWNKYVATPIQQCGNGEIGKRAMILLKHK 533

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILK+IVLRRTKKGRAADLALPPRI+SLRRDTMDIKE DYY+SLY+ESQAQFNTYV  GTV
Sbjct: 534  ILKNIVLRRTKKGRAADLALPPRIVSLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTV 593

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDAD--NSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TA +R GS+V++D  N EQVCG+CHDP E+PV
Sbjct: 594  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTASQRAGSIVNSDKNNDEQVCGICHDPTEEPV 653



 Score =  341 bits (875), Expect = 1e-90
 Identities = 187/348 (53%), Positives = 226/348 (64%), Gaps = 5/348 (1%)
 Frame = -2

Query: 1710 TNEEEQ--EDHAAEIDFXXXXXXXXXXXKRNRE---TRPTLMXXXXXXXXXXXXXENYTK 1546
            +N E+Q  E +  + DF           KR ++   + P LM             EN T 
Sbjct: 87   SNAEQQSTEQNEGDYDFYVSSRKKRNNVKRKKKKARSGPLLMWEVWEQEHEKWIDENLTA 146

Query: 1545 DFDLENQNEMAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMGKTIQ 1366
            D DL+ QN +  ETSEA  DLI+PLLRYQKEWLAWALKQE+SA KGGILADEMGMGKTIQ
Sbjct: 147  DVDLDQQNAVITETSEASPDLIIPLLRYQKEWLAWALKQEDSATKGGILADEMGMGKTIQ 206

Query: 1365 AIALVHAKREICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERFTSKG 1186
            AIALV AKRE+ +   E N  +         P ++GTLVICPVVAV QWV+EI+RFTS+G
Sbjct: 207  AIALVLAKRELLRTIAEPNGSSLTPSSSTDLPMIRGTLVICPVVAVSQWVSEIDRFTSRG 266

Query: 1185 SNKVLVYHGTNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYEGKLL 1006
            S KVLVYHGTNRGKN+ QF +YDFVITTYSIVEAEYRK +MPPK+KC +CGKSFY+ KL 
Sbjct: 267  STKVLVYHGTNRGKNIKQFLDYDFVITTYSIVEAEYRKYMMPPKEKCPYCGKSFYQKKLS 326

Query: 1005 IHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACRKAKK 826
            +HL Y+CGPDAV                R+ SK    SD+     +++D RKGA +K  K
Sbjct: 327  VHLKYYCGPDAVKTEKQSKQE-------RKKSKSVFKSDREHTSNYETDMRKGAGKKKSK 379

Query: 825  SESEEKDLGTSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
               E+KDL      +  A  E  LP  KS+LHSV+W+RIILDEAH+ K
Sbjct: 380  HNEEDKDLDFEFD-DTFAGVEHSLPQGKSLLHSVKWERIILDEAHFVK 426


>ref|XP_006342255.1| PREDICTED: DNA repair protein RAD16-like [Solanum tuberosum]
          Length = 892

 Score =  394 bits (1013), Expect = e-106
 Identities = 188/238 (78%), Positives = 209/238 (87%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRRSNTTRA+LALES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY
Sbjct: 414  WNRIILDEAHYVKDRRSNTTRAILALESSYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 473

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            YFCKDCDCR L+YSSS ECP CPH  +RHFCWWN+YIA+PIQ+ GN G G+ AM+LLKHK
Sbjct: 474  YFCKDCDCRVLDYSSS-ECPHCPHKPIRHFCWWNRYIASPIQSQGNHGTGRDAMVLLKHK 532

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI++LR+D++D+KEEDYY SLYNESQAQFNTY+  GT+
Sbjct: 533  ILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTL 592

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TAL R  S  DA + EQ CGLCHDPVEDPV
Sbjct: 593  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARRESTNDAGSVEQPCGLCHDPVEDPV 650



 Score =  337 bits (863), Expect = 3e-89
 Identities = 176/316 (55%), Positives = 214/316 (67%)
 Frame = -2

Query: 1629 RNRETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEW 1450
            +N++ RPTL+              NY  D D  +Q+E+  ET++ PSDLI+PLLRYQKEW
Sbjct: 121  KNQKKRPTLLWEIWEEENDSWMAVNYPNDPDFNSQDELVTETAQPPSDLIMPLLRYQKEW 180

Query: 1449 LAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILTXXXXXXXXXP 1270
            LAWALKQEES  +GGILADEMGMGKT+QAIALV AKRE+ Q     ++L+         P
Sbjct: 181  LAWALKQEESTARGGILADEMGMGKTVQAIALVLAKRELGQVISGSSLLSPAPCTSQELP 240

Query: 1269 KVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIV 1090
             VKGTLVICPVVAVIQWV+EI+RFT+KGSNK+LVYHG NR KN+ +F+EYDFVITTYS V
Sbjct: 241  AVKGTLVICPVVAVIQWVSEIDRFTTKGSNKILVYHGANRVKNIDKFAEYDFVITTYSTV 300

Query: 1089 EAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMS 910
            EAEYRKNVMPPK+KCQWCGKSFYE KL +H  YFCGPDAV                 ++ 
Sbjct: 301  EAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQKYFCGPDAVKTAKQSKQQSKTGGKPSKLK 360

Query: 909  KQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGTSSTMEKLADAEQGLPTRKSILH 730
            K     D     E D+ KR       +KSE++      + +++  A A Q +  RKSILH
Sbjct: 361  KNPIEGD----SEIDTGKRGRGKGIKRKSETD------AGSVDDSACAGQDMSMRKSILH 410

Query: 729  SVRWDRIILDEAHYYK 682
            SV+W+RIILDEAHY K
Sbjct: 411  SVKWNRIILDEAHYVK 426


>ref|XP_009627930.1| PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]
          Length = 916

 Score =  389 bits (998), Expect = e-105
 Identities = 182/238 (76%), Positives = 208/238 (87%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NT RA+ ALES YKWALSGTPLQNRVGELYSLVRFLQ++PYSY
Sbjct: 438  WNRIILDEAHYVKDRRCNTARAIFALESSYKWALSGTPLQNRVGELYSLVRFLQMIPYSY 497

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            YFCKDCDCR L+YSS+ +CP CPH  VRHFCWWNKYIA+PIQ+ GN G G+ AM+LLKHK
Sbjct: 498  YFCKDCDCRVLDYSST-DCPHCPHKSVRHFCWWNKYIASPIQSQGNRGTGRDAMVLLKHK 556

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI++LR+D++D+KEEDYY SLYNESQAQFNTY+  GT+
Sbjct: 557  ILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTL 616

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TAL R+G+  D+  +EQ CGLCHDPVEDPV
Sbjct: 617  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARSGNTDDSGYAEQPCGLCHDPVEDPV 674



 Score =  355 bits (911), Expect = 9e-95
 Identities = 186/317 (58%), Positives = 224/317 (70%), Gaps = 1/317 (0%)
 Frame = -2

Query: 1629 RNRETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEW 1450
            +N++ RPTLM             ENYT D DL+ QN +  ET+E PSDL++PLLRYQKEW
Sbjct: 135  KNKKKRPTLMWEIWEEENDRWMAENYTNDLDLDCQNGLVNETAETPSDLLMPLLRYQKEW 194

Query: 1449 LAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILTXXXXXXXXXP 1270
            LAWALKQEES  +GG+LADEMGMGKT+QAIALV AKRE+ QA  E ++           P
Sbjct: 195  LAWALKQEESTARGGVLADEMGMGKTVQAIALVLAKRELGQAISESSLPPSAPCTSQELP 254

Query: 1269 KVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIV 1090
             VKGTLVICPVVAVIQWV+EI+RFT+KGSNK+LVYHG NR KN+H+F+EYDFVITTYS V
Sbjct: 255  AVKGTLVICPVVAVIQWVSEIDRFTTKGSNKILVYHGANREKNIHKFAEYDFVITTYSTV 314

Query: 1089 EAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMS 910
            EAEYRKNVMPPK+KCQWCGKSFYE KL +H  YFCGPDAV             K   +MS
Sbjct: 315  EAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQRYFCGPDAVRTAKQSKQERKKLKPGGKMS 374

Query: 909  KQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGT-SSTMEKLADAEQGLPTRKSIL 733
            K K  S KGKA + DSD       K  + +  ++ + T + +++     +Q + TRKSIL
Sbjct: 375  KLKKESIKGKA-KTDSDSEIETGSKRGRGKGVKRKIKTDAGSIDDATGVDQDMITRKSIL 433

Query: 732  HSVRWDRIILDEAHYYK 682
            HSV+W+RIILDEAHY K
Sbjct: 434  HSVKWNRIILDEAHYVK 450


>ref|XP_004248914.1| PREDICTED: DNA repair protein RAD16-like [Solanum lycopersicum]
          Length = 889

 Score =  388 bits (996), Expect = e-104
 Identities = 184/238 (77%), Positives = 207/238 (86%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRRSNTT+A+LALES YKWALSGTPLQNRVGELYSLVRFLQI+PYSY
Sbjct: 411  WNRIILDEAHYVKDRRSNTTKAILALESSYKWALSGTPLQNRVGELYSLVRFLQILPYSY 470

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            YFCKDCDCR L+YSSS +CP CPH  VRHFCWWN+YIA+PIQ+ GN G G+ AM+LLKHK
Sbjct: 471  YFCKDCDCRVLDYSSS-DCPHCPHKPVRHFCWWNRYIASPIQSQGNYGTGKDAMVLLKHK 529

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI++LR+D++D+KEEDYY SLYNESQAQFN Y+  GT+
Sbjct: 530  ILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNIYIQAGTL 589

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS  AL R  S  DA + EQ CGLCHDPVEDPV
Sbjct: 590  MNNYAHIFDLLTRLRQAVDHPYLVVYSSVALARRESTNDAGSVEQPCGLCHDPVEDPV 647



 Score =  322 bits (825), Expect = 8e-85
 Identities = 169/316 (53%), Positives = 209/316 (66%)
 Frame = -2

Query: 1629 RNRETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEW 1450
            +N++ RP L+             ENY  D DL  Q+E+  ET++ PSD I+PLLRYQKEW
Sbjct: 118  KNQKKRPILLWEIWEEENDSWMAENYPNDPDLNIQDELVTETAQPPSDFIMPLLRYQKEW 177

Query: 1449 LAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILTXXXXXXXXXP 1270
            LAWALKQEES  +GGILADEMGMGKT QAIALV A+RE+ QA  + ++L+          
Sbjct: 178  LAWALKQEESNARGGILADEMGMGKTAQAIALVLARRELAQAISDSSLLSSAPCSSQELL 237

Query: 1269 KVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIV 1090
             VKGTLVICPVVAVIQWV+EI+RFT+KGSNKVLVYHG NR KN+ +F+EY+FVITTYS V
Sbjct: 238  AVKGTLVICPVVAVIQWVSEIDRFTAKGSNKVLVYHGANREKNIDKFAEYEFVITTYSTV 297

Query: 1089 EAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMS 910
            EAEYRKNV+PPK+KCQWCGKSFYE KL  H  Y+CGP AV                 ++ 
Sbjct: 298  EAEYRKNVLPPKEKCQWCGKSFYEQKLPFHQKYYCGPHAVKTDKQSKQQSNPGGKPSKLK 357

Query: 909  KQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGTSSTMEKLADAEQGLPTRKSILH 730
            K          G+ + D  KG   K  K +S+      + +++  A A Q +  RKS+LH
Sbjct: 358  KNPI------EGDSEIDTGKGGRGKGIKRKSDT----DAGSVDDSACASQDMSPRKSVLH 407

Query: 729  SVRWDRIILDEAHYYK 682
             V+W+RIILDEAHY K
Sbjct: 408  CVKWNRIILDEAHYVK 423


>ref|XP_009795276.1| PREDICTED: DNA repair protein RAD16 isoform X2 [Nicotiana sylvestris]
          Length = 916

 Score =  387 bits (995), Expect = e-104
 Identities = 182/238 (76%), Positives = 207/238 (86%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NTTRA+ ALES YKWALSGTPLQNRVGELYSLVRFLQ++PYSY
Sbjct: 438  WNRIILDEAHYVKDRRCNTTRAIFALESSYKWALSGTPLQNRVGELYSLVRFLQMIPYSY 497

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            YFCKDCDCR L+YS + +CP CPH  VRHFCWWNKYIA+PIQ+ GN G G+ AM+LLKHK
Sbjct: 498  YFCKDCDCRVLDYSPT-DCPHCPHKSVRHFCWWNKYIASPIQSQGNRGTGRDAMVLLKHK 556

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI++LR+D++D+KEEDYY SLYNESQAQFNTY+  GT+
Sbjct: 557  ILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTL 616

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TAL R+G+  D+   EQ CGLCHDPVEDPV
Sbjct: 617  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARSGNTDDSGYVEQPCGLCHDPVEDPV 674



 Score =  358 bits (920), Expect = 8e-96
 Identities = 188/317 (59%), Positives = 227/317 (71%), Gaps = 1/317 (0%)
 Frame = -2

Query: 1629 RNRETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEW 1450
            +N++ RPTLM             ENYT D DL+ QN +  +T+E PSDL++PLLRYQKEW
Sbjct: 135  KNKKKRPTLMWEIWEEENDRWMAENYTNDLDLDCQNGLVNDTAETPSDLLMPLLRYQKEW 194

Query: 1449 LAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILTXXXXXXXXXP 1270
            LAWALKQEES  +GGILADEMGMGKT+QAIALV AKRE+ QA  E ++L+         P
Sbjct: 195  LAWALKQEESTARGGILADEMGMGKTVQAIALVLAKRELGQAISESSLLSSAPCTSQELP 254

Query: 1269 KVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIV 1090
             VKGTLVICPVVAVIQWV+EI+RFT+KGSNK+LVYHG NR KN+H+F+EYDFVITTYS V
Sbjct: 255  AVKGTLVICPVVAVIQWVSEIDRFTTKGSNKILVYHGANREKNIHKFAEYDFVITTYSTV 314

Query: 1089 EAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMS 910
            EAEYRKNVMPPK+KCQWCGKSFYE KL +H  YFCGPDAV             K   + S
Sbjct: 315  EAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQRYFCGPDAVRTAKQLKQERKKSKPGGKTS 374

Query: 909  KQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGT-SSTMEKLADAEQGLPTRKSIL 733
            K K  S KGKA + DSD       K  + +  ++ + T +S+++  A  +Q + TRKSIL
Sbjct: 375  KLKKESIKGKA-KTDSDSEIETGSKRGRGKGVKRKIKTDASSIDDAAGVDQDMITRKSIL 433

Query: 732  HSVRWDRIILDEAHYYK 682
            HSV+W+RIILDEAHY K
Sbjct: 434  HSVKWNRIILDEAHYVK 450


>ref|XP_009795273.1| PREDICTED: DNA repair protein RAD16 isoform X1 [Nicotiana sylvestris]
            gi|698498778|ref|XP_009795275.1| PREDICTED: DNA repair
            protein RAD16 isoform X1 [Nicotiana sylvestris]
          Length = 926

 Score =  387 bits (995), Expect = e-104
 Identities = 182/238 (76%), Positives = 207/238 (86%), Gaps = 5/238 (2%)
 Frame = -3

Query: 704  WMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVPYSY 540
            W R+I+     +KDRR NTTRA+ ALES YKWALSGTPLQNRVGELYSLVRFLQ++PYSY
Sbjct: 448  WNRIILDEAHYVKDRRCNTTRAIFALESSYKWALSGTPLQNRVGELYSLVRFLQMIPYSY 507

Query: 539  YFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILLKHK 360
            YFCKDCDCR L+YS + +CP CPH  VRHFCWWNKYIA+PIQ+ GN G G+ AM+LLKHK
Sbjct: 508  YFCKDCDCRVLDYSPT-DCPHCPHKSVRHFCWWNKYIASPIQSQGNRGTGRDAMVLLKHK 566

Query: 359  ILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTEGTV 180
            ILKSI+LRRTKKGRAADLALPPRI++LR+D++D+KEEDYY SLYNESQAQFNTY+  GT+
Sbjct: 567  ILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTL 626

Query: 179  MNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDPV 6
            MNNYAHIFDLLTRLR AVDHPYLVVYS TAL R+G+  D+   EQ CGLCHDPVEDPV
Sbjct: 627  MNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARSGNTDDSGYVEQPCGLCHDPVEDPV 684



 Score =  358 bits (920), Expect = 8e-96
 Identities = 188/317 (59%), Positives = 227/317 (71%), Gaps = 1/317 (0%)
 Frame = -2

Query: 1629 RNRETRPTLMXXXXXXXXXXXXXENYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEW 1450
            +N++ RPTLM             ENYT D DL+ QN +  +T+E PSDL++PLLRYQKEW
Sbjct: 145  KNKKKRPTLMWEIWEEENDRWMAENYTNDLDLDCQNGLVNDTAETPSDLLMPLLRYQKEW 204

Query: 1449 LAWALKQEESAIKGGILADEMGMGKTIQAIALVHAKREICQAFGELNILTXXXXXXXXXP 1270
            LAWALKQEES  +GGILADEMGMGKT+QAIALV AKRE+ QA  E ++L+         P
Sbjct: 205  LAWALKQEESTARGGILADEMGMGKTVQAIALVLAKRELGQAISESSLLSSAPCTSQELP 264

Query: 1269 KVKGTLVICPVVAVIQWVNEIERFTSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIV 1090
             VKGTLVICPVVAVIQWV+EI+RFT+KGSNK+LVYHG NR KN+H+F+EYDFVITTYS V
Sbjct: 265  AVKGTLVICPVVAVIQWVSEIDRFTTKGSNKILVYHGANREKNIHKFAEYDFVITTYSTV 324

Query: 1089 EAEYRKNVMPPKQKCQWCGKSFYEGKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMS 910
            EAEYRKNVMPPK+KCQWCGKSFYE KL +H  YFCGPDAV             K   + S
Sbjct: 325  EAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQRYFCGPDAVRTAKQLKQERKKSKPGGKTS 384

Query: 909  KQKTASDKGKAGEFDSDKRKGACRKAKKSESEEKDLGT-SSTMEKLADAEQGLPTRKSIL 733
            K K  S KGKA + DSD       K  + +  ++ + T +S+++  A  +Q + TRKSIL
Sbjct: 385  KLKKESIKGKA-KTDSDSEIETGSKRGRGKGVKRKIKTDASSIDDAAGVDQDMITRKSIL 443

Query: 732  HSVRWDRIILDEAHYYK 682
            HSV+W+RIILDEAHY K
Sbjct: 444  HSVKWNRIILDEAHYVK 460


>ref|XP_011047250.1| PREDICTED: DNA repair protein RAD16 isoform X3 [Populus euphratica]
          Length = 833

 Score =  387 bits (993), Expect = e-104
 Identities = 178/241 (73%), Positives = 208/241 (86%), Gaps = 5/241 (2%)
 Frame = -3

Query: 713  ALFWMRLII-----IKDRRSNTTRAVLALESCYKWALSGTPLQNRVGELYSLVRFLQIVP 549
            +L W R+I+     IKDRR NT +AV AL+S YKWALSGTPLQNRVGELYSLVRFLQIVP
Sbjct: 350  SLKWERIILDEAHFIKDRRCNTAKAVFALDSSYKWALSGTPLQNRVGELYSLVRFLQIVP 409

Query: 548  YSYYFCKDCDCRTLEYSSSAECPKCPHNYVRHFCWWNKYIATPIQAHGNIGAGQRAMILL 369
            YSYY CKDCDCRTL+Y SS +C  CPH+ VRHFCWWNKY++ PIQ HGN   G+RAMILL
Sbjct: 410  YSYYLCKDCDCRTLDYGSSTQCSSCPHSSVRHFCWWNKYVSNPIQKHGNADYGRRAMILL 469

Query: 368  KHKILKSIVLRRTKKGRAADLALPPRIISLRRDTMDIKEEDYYKSLYNESQAQFNTYVTE 189
            KHK+LK+IVLRRTKKGRA+DLALPPRI+ LRRD +D++EEDYY+SLYNESQAQFNTYV E
Sbjct: 470  KHKVLKNIVLRRTKKGRASDLALPPRIVILRRDILDVREEDYYESLYNESQAQFNTYVEE 529

Query: 188  GTVMNNYAHIFDLLTRLRLAVDHPYLVVYSRTALERTGSMVDADNSEQVCGLCHDPVEDP 9
            GT+MNNYAHIFDLLTRLR AVDHPYLVVYS+T+  + G++VD D+++  CG+CH+P EDP
Sbjct: 530  GTLMNNYAHIFDLLTRLRQAVDHPYLVVYSKTSALKGGNVVDLDSAKNACGICHEPAEDP 589

Query: 8    V 6
            V
Sbjct: 590  V 590



 Score =  295 bits (754), Expect = 1e-76
 Identities = 158/292 (54%), Positives = 194/292 (66%)
 Frame = -2

Query: 1557 NYTKDFDLENQNEMAAETSEAPSDLIVPLLRYQKEWLAWALKQEESAIKGGILADEMGMG 1378
            N ++D D ++   + A+T+EAPSDLI+PLLR+QKEWLAWAL+QEES+ +GGILADEMGMG
Sbjct: 103  NLSEDVDFDHHRGLEAKTAEAPSDLIMPLLRFQKEWLAWALEQEESSTRGGILADEMGMG 162

Query: 1377 KTIQAIALVHAKREICQAFGELNILTXXXXXXXXXPKVKGTLVICPVVAVIQWVNEIERF 1198
            KTIQAIALV AKRE+ Q   E N  +           +K TLV+CPVVAV QWV+EI+R+
Sbjct: 163  KTIQAIALVLAKRELHQNLFEFNGPSPFSGSSSDLAGIKATLVVCPVVAVTQWVSEIDRY 222

Query: 1197 TSKGSNKVLVYHGTNRGKNLHQFSEYDFVITTYSIVEAEYRKNVMPPKQKCQWCGKSFYE 1018
            T+KGS KVLVYHG NR K+   F +YDFVITTYSI+E+E+RK +MPPK+KC +CG SFYE
Sbjct: 223  TTKGSTKVLVYHGANREKSSKLFHDYDFVITTYSIIESEFRKYMMPPKKKCVYCGNSFYE 282

Query: 1017 GKLLIHLNYFCGPDAVXXXXXXXXXXXXXKFVRRMSKQKTASDKGKAGEFDSDKRKGACR 838
             KL +HL YFCGPDA              K V   SKQKT SDK K              
Sbjct: 283  KKLTVHLKYFCGPDANRTAKQSKQAKKKLKNVPSASKQKTESDKDK-------------- 328

Query: 837  KAKKSESEEKDLGTSSTMEKLADAEQGLPTRKSILHSVRWDRIILDEAHYYK 682
                          S  ME L++AE GL   KS+LHS++W+RIILDEAH+ K
Sbjct: 329  --------------SRPME-LSEAELGLQKEKSLLHSLKWERIILDEAHFIK 365