BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00023173
         (627 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     187   3e-45
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]   174   4e-41
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   164   5e-38
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   155   2e-35
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     152   1e-34
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]         151   3e-34
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     148   2e-33
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   148   2e-33
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   147   4e-33
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         147   6e-33
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892...   145   1e-32
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     145   2e-32
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        144   3e-32
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           144   4e-32
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   143   7e-32
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   142   2e-31
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   141   3e-31
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   141   3e-31
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   141   3e-31
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   141   3e-31

>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  187 bits (476), Expect = 3e-45
 Identities = 111/228 (48%), Positives = 135/228 (59%), Gaps = 29/228 (12%)
 Frame = -2

Query: 623  MVEVEHSQQ------VEQIP-----SITRDQPQREIKPPSRLGWEDE--VHFALMSSRGD 483
            M +VE S Q      + Q P     SI  D+P+R  KP  R G+E E  V  AL  S+GD
Sbjct: 722  MAQVEQSPQRGQNSPIPQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGD 781

Query: 482  PTTYNEAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKD 303
            PTTY +AI S ES  W+GAMT+EME+L  NSVW+LVPKPK+R +V  KWVF+KKE I++D
Sbjct: 782  PTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHED 841

Query: 302  EESKYNARLVGKGFSQKERIDYDDIFSPVVKHTSIR----------VXXXXXXXXXGHLH 153
            +   Y ARLV KG+SQKE +DYD+IFSPVVKHTSIR          +           LH
Sbjct: 842  DAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLH 901

Query: 152  G------LTQMIDSRKCVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTF 27
            G           +     G+    CRLKKSLYGLK  PR WY  FDT+
Sbjct: 902  GDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTY 949


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score =  174 bits (441), Expect = 4e-41
 Identities = 91/211 (43%), Positives = 127/211 (60%), Gaps = 16/211 (7%)
 Frame = -2

Query: 605 SQQVEQIPSITRDQPQREIKPPSRLGWEDEVHFALMSSRGDPTTYNEAIRSNESNSWMGA 426
           S + +Q  SI  D+P+R IKPP+R G+ED V +AL++S  DP T+ EAI + E + WMGA
Sbjct: 120 SSEDQQHHSIAIDKPRRTIKPPTRYGFEDLVSYALITSSKDPITFQEAIHNQEKSRWMGA 179

Query: 425 MTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFSQKER 246
           M +E++ L  N  WDLV  P+ +  +  KWV++KKEAI K E  K+ ARLV KG+SQ++ 
Sbjct: 180 MVEEIQFLHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKEGEKFKARLVAKGYSQRKG 239

Query: 245 IDYDDIFSPVVKHTSIRV--------------XXXXXXXXXGHLHGLTQMIDSRKCV--G 114
           +DYD+IFSP+V+HTSIR                        G L  L  M+     +  G
Sbjct: 240 VDYDEIFSPMVRHTSIRTVLGLVAHFDMQLEQMDVETTFLHGDLEELVYMVQPEGFIQPG 299

Query: 113 RTMCTCRLKKSLYGLK*FPR*WYLRFDTFYV 21
           +    C+L+KSLYGLK  PR WY  FD++ +
Sbjct: 300 QEHLVCKLRKSLYGLKQSPRQWYKCFDSYII 330


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  164 bits (414), Expect = 5e-38
 Identities = 94/209 (44%), Positives = 125/209 (59%), Gaps = 22/209 (10%)
 Frame = -2

Query: 581  SITRDQPQRE-IKPPSRLGWEDEVHFALMSSR----GDPTTYNEAIRSNESNSWMGAMTK 417
            SI +D+P+R  ++PP+R G+ED V +AL  +      +P+TY EAI S++S  W  AM  
Sbjct: 753  SIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGD 812

Query: 416  EMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFSQKERIDY 237
            EME+L  N  WDLV +P  R I+  KWVF+KKE I   E  KY AR+V +GF+Q+E +DY
Sbjct: 813  EMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDY 872

Query: 236  DDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG-------LTQMIDSRKCVGRT 108
            ++IFSPVV+HTSIRV                     LHG       +TQ  D  +  G+ 
Sbjct: 873  NEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQP-DGFQVPGKE 931

Query: 107  MCTCRLKKSLYGLK*FPR*WYLRFDTFYV 21
               C+LKKSLYGLK  PR WY RFD++ V
Sbjct: 932  NHVCKLKKSLYGLKQSPRQWYKRFDSYMV 960


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  155 bits (391), Expect = 2e-35
 Identities = 93/226 (41%), Positives = 131/226 (57%), Gaps = 24/226 (10%)
 Frame = -2

Query: 623  MVEVEHSQQVEQIP--SITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTYN 468
            ++E  +S  V+Q P  SI +D+P+R IKPP R   E   V +AL     +    +P+TY+
Sbjct: 968  VIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYS 1027

Query: 467  EAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKY 288
            EAI S++ N W+ AM  EME+L  N  W+LV  PK++  +  KW+F++KE I   +E++Y
Sbjct: 1028 EAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARY 1087

Query: 287  NARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHGLTQ- 141
             ARL+ KG+SQ   ID++D+FSPVVKH+SIR                      LHG  + 
Sbjct: 1088 KARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 1147

Query: 140  ---MIDSRKCV--GRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
               M   +  V  G+    CRLKKSLYGLK  PR WY RFD+F ++
Sbjct: 1148 DIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLS 1193


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  152 bits (385), Expect = 1e-34
 Identities = 91/226 (40%), Positives = 128/226 (56%), Gaps = 24/226 (10%)
 Frame = -2

Query: 623  MVEVEHSQQVEQIP--SITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTYN 468
            ++E   S  V Q P  SI +D+P+R IKPP R   E + V +AL     +    +P+TY+
Sbjct: 733  VIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYS 792

Query: 467  EAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKY 288
            EAI S++ N W+ AM  EME+L  N  W+LV  PK++  +  KW+F++KE +   +E++Y
Sbjct: 793  EAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARY 852

Query: 287  NARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG---- 150
             ARLV KG+SQ   ID++D+FSPVVKH+SIR                      LHG    
Sbjct: 853  KARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEE 912

Query: 149  --LTQMIDSRKCVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
                +  +     G+    CRLKKSLYGLK  PR WY RFD+F ++
Sbjct: 913  DIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLS 958


>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
          Length = 621

 Score =  151 bits (382), Expect = 3e-34
 Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 24/227 (10%)
 Frame = -2

Query: 626 DMVEVEHSQQVEQIP--SITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTY 471
           + ++V   Q  EQ P  SI +++P+R  KPP R   E   V +AL     +    +P+TY
Sbjct: 146 ETIDVRERQHHEQSPKRSIAKEKPKRSTKPPQRYIEEANIVAYALSVAEEIEGNAEPSTY 205

Query: 470 NEAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESK 291
           +EAI S++ N W+ AM  EME+L  N  W+LV  PK++  +  KW+F++KE I   +E+ 
Sbjct: 206 SEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKECISPSDEAM 265

Query: 290 YNARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG--- 150
           Y ARLV KG+SQ   ID++D+FSPVVKH+SIR                      LHG   
Sbjct: 266 YKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 325

Query: 149 ---LTQMIDSRKCVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
                +  +     G+    CRLKKSLYGLK  PR WY RFD+F ++
Sbjct: 326 EDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLS 372


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  148 bits (374), Expect = 2e-33
 Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 24/226 (10%)
 Frame = -2

Query: 623  MVEVEHSQQVEQIP--SITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTYN 468
            ++E   S  V+Q    SI +D+P+R IKPP R   E   V +AL     +    +P+TY+
Sbjct: 796  VIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYS 855

Query: 467  EAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKY 288
            EAI S++ N W+ AM  EME+L  N  W+ V  PK++  +  KW+F++KE +   +E++Y
Sbjct: 856  EAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARY 915

Query: 287  NARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG---- 150
             ARLV KG+SQ   ID++D+FSP++KH+SIR                      LHG    
Sbjct: 916  KARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEE 975

Query: 149  --LTQMIDSRKCVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
                +  +    +G+    CRLKKSLYGLK  PR WY RFD+F ++
Sbjct: 976  DIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLS 1021


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  148 bits (374), Expect = 2e-33
 Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 24/226 (10%)
 Frame = -2

Query: 623  MVEVEHSQQVEQIP--SITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTYN 468
            ++E   S  V+Q    SI +D+P+R IKPP R   E   V +AL     +    +P+TY+
Sbjct: 796  VIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYS 855

Query: 467  EAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKY 288
            EAI S++ N W+ AM  EME+L  N  W+ V  PK++  +  KW+F++KE +   +E++Y
Sbjct: 856  EAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARY 915

Query: 287  NARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG---- 150
             ARLV KG+SQ   ID++D+FSP++KH+SIR                      LHG    
Sbjct: 916  KARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEE 975

Query: 149  --LTQMIDSRKCVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
                +  +    +G+    CRLKKSLYGLK  PR WY RFD+F ++
Sbjct: 976  DIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLS 1021


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 983

 Score =  147 bits (372), Expect = 4e-33
 Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 24/226 (10%)
 Frame = -2

Query: 623  MVEVEHSQQVEQIP--SITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTYN 468
            +++   S  V Q P  SI +D+P+R IKPP R   E   V +AL     +    +P+ Y+
Sbjct: 503  VIQDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSIYS 562

Query: 467  EAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKY 288
            EAI S++ N W+  M  EME+L  N  W+LV  PK++  +  KW+F++KE +   +E++Y
Sbjct: 563  EAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPSDEARY 622

Query: 287  NARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG---- 150
             ARLV KG+SQ   ID++D+FSP+VKH+SIR                      LHG    
Sbjct: 623  KARLVAKGYSQIPSIDFNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 682

Query: 149  --LTQMIDSRKCVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
                +  +     G+    CRLKKSLYGLK  PR WY RFD+F ++
Sbjct: 683  DIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLS 728


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  147 bits (370), Expect = 6e-33
 Identities = 91/226 (40%), Positives = 126/226 (55%), Gaps = 24/226 (10%)
 Frame = -2

Query: 623  MVEVEHSQQVEQIPS--ITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTYN 468
            ++E   S  V+Q P   I +D+P+R  KPP R   E   V +AL     +    +P+TY+
Sbjct: 543  VIEDSDSSTVQQSPKRFIAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYS 602

Query: 467  EAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKY 288
            EAI S++ N W+ AM  EME+L  N  W+LV  PK++  +  KW+F++K+ I   +E+ Y
Sbjct: 603  EAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGISPSDEAMY 662

Query: 287  NARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHGLTQ- 141
             ARLV KG+SQ   ID++D+FSPVVKH+SIR                      LHG  + 
Sbjct: 663  KARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 722

Query: 140  ---MIDSRKCV--GRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
               M  S   V  G+    CRLKKSLYGLK   R WY RFD+F ++
Sbjct: 723  DIYMEQSEGFVVPGKENLVCRLKKSLYGLKQSSRQWYKRFDSFMLS 768


>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
            vulgaris]
          Length = 1947

 Score =  145 bits (367), Expect = 1e-32
 Identities = 87/208 (41%), Positives = 114/208 (54%), Gaps = 16/208 (7%)
 Frame = -2

Query: 596  VEQIPSITRDQPQREIKPPSRLGWEDEVHFALMSSRGDPTTYNEAIRSNESNSWMGAMTK 417
            +EQI    R+ P R       +G+   +H A      +P +Y EA+ SNES  W+ AM++
Sbjct: 870  IEQIEG--RNVPGRNCCVEEMIGYA--LHVAEDIESPEPMSYKEAVSSNESAKWLVAMSE 925

Query: 416  EMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFSQKERIDY 237
            EME+L  N  W+LV  P+ R +V  KWVF++KE   + E  +Y ARLV KGFSQ+E +DY
Sbjct: 926  EMESLHKNQTWELVRIPQGRKVVGCKWVFKRKEGTSEGESVRYKARLVAKGFSQREGVDY 985

Query: 236  DDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG------LTQMIDSRKCVGRTM 105
            ++IFSPVV+HTSIRV                     LHG      L    +     G+  
Sbjct: 986  NEIFSPVVRHTSIRVLLAMVAHFDLELEQLDVKTAFLHGELEEDILMSQPEGFVVPGKEK 1045

Query: 104  CTCRLKKSLYGLK*FPR*WYLRFDTFYV 21
              C LKKSLYGLK  PR WY RFD+F V
Sbjct: 1046 FACSLKKSLYGLKQSPRQWYKRFDSFMV 1073


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  145 bits (365), Expect = 2e-32
 Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 24/223 (10%)
 Frame = -2

Query: 623  MVEVEHSQQVEQIP--SITRDQPQREIKPPSRLGWEDE-VHFAL-----MSSRGDPTTYN 468
            ++E   S  V+Q P  SI +D+P+R IKPP R   E   V +AL     +    +P+TY+
Sbjct: 640  VIEDSDSSAVQQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYS 699

Query: 467  EAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKY 288
            EAI S+  N W+ AM  EME+L  N  W+LV  PK++  +  KW+F++K+ +   +E++Y
Sbjct: 700  EAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARY 759

Query: 287  NARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG---- 150
             ARLV KG+SQ   ID++D+FSPV+KH+SIR                      LHG    
Sbjct: 760  KARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEE 819

Query: 149  --LTQMIDSRKCVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTF 27
                +  +     G+     RLKKSLYGLK  PR WY RFD+F
Sbjct: 820  DIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSF 862


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  144 bits (364), Expect = 3e-32
 Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 20/207 (9%)
 Frame = -2

Query: 578  ITRDQPQREIKPPSRLGWEDEVHFALMSSRG----DPTTYNEAIRSNESNSWMGAMTKEM 411
            + RD+ +RE++ P R G+ D + +AL+ +      +P  ++EA+ S   + W+ AM  EM
Sbjct: 778  LARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEM 837

Query: 410  EALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFSQKERIDYDD 231
            E+L  N  W L+P P ++ +++ KW+F++ E I   E  KY ARLV +GF+Q+E +D+++
Sbjct: 838  ESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNE 897

Query: 230  IFSPVVKHTSIRV----------XXXXXXXXXGHLHG------LTQMIDSRKCVGRTMCT 99
            IFSPVVKH+SIR+                     LHG      L    +  +C  +    
Sbjct: 898  IFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYV 957

Query: 98   CRLKKSLYGLK*FPR*WYLRFDTFYVA 18
            C L KSLYGLK  PR WY RFD F V+
Sbjct: 958  CLLHKSLYGLKQSPRQWYRRFDDFMVS 984


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  144 bits (363), Expect = 4e-32
 Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 22/216 (10%)
 Frame = -2

Query: 599  QVEQIPSITRDQPQREIKPPSRLGWEDEVHFALMSSRG------DPTTYNEAIRSNESNS 438
            Q+E+  SI + + +R  KPP RL  E  + +  +S         +P TY EA+R  +S +
Sbjct: 774  QLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSEN 833

Query: 437  WMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFS 258
            W+ AM +EM++L  NS W++VP PK +  +  KW+F++KEA+   E  KY ARLV +G+S
Sbjct: 834  WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYS 893

Query: 257  QKERIDYDDIFSPVVKHTSIR----------VXXXXXXXXXGHLHGLTQ---MIDSRK-- 123
            Q   +DY+D+FSPVVKH+SIR          +           LHG  +    +D  +  
Sbjct: 894  QIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGF 953

Query: 122  -CVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
               G+    C+LK+SLYGLK  PR W  RFD+F ++
Sbjct: 954  IVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLS 989


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  143 bits (361), Expect = 7e-32
 Identities = 71/151 (47%), Positives = 101/151 (66%), Gaps = 9/151 (5%)
 Frame = -2

Query: 617  EVEHSQQVEQIP-----SITRDQPQREIKPPSRLGWEDEVHFALMSSRG----DPTTYNE 465
            E+ H +Q E        ++ RD+ +R++KPP R G  +   FAL  +      +P TY E
Sbjct: 717  EIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQE 776

Query: 464  AIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYN 285
            AI SNE++ W+ A+ +EM++L  N  W+LV KPKDR +V SKWVF++K+    +E  +Y 
Sbjct: 777  AINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYK 836

Query: 284  ARLVGKGFSQKERIDYDDIFSPVVKHTSIRV 192
            ARLV KGFSQKE +DY++IFSPVVKH+SIR+
Sbjct: 837  ARLVAKGFSQKEGVDYNEIFSPVVKHSSIRL 867


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  142 bits (358), Expect = 2e-31
 Identities = 90/214 (42%), Positives = 117/214 (54%), Gaps = 26/214 (12%)
 Frame = -2

Query: 581  SITRDQPQREIKPPSRL------GWEDEVHFALMSS----RGDPTTYNEAIRSNESNSWM 432
            SI   +P+REI+ P R          + V FAL  +    R +P +Y EA+ S +S  W+
Sbjct: 871  SIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWL 930

Query: 431  GAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFSQK 252
             +M  EM +L  N  W+LVP P+    VD KW+F+ K+ I  DE  KY +RLV KGFSQK
Sbjct: 931  SSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQK 990

Query: 251  ERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG-LTQMIDSRKCVG--- 114
            E IDY+++FSPVVKH SIRV                     LHG L + I  ++  G   
Sbjct: 991  EGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVD 1050

Query: 113  --RTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
              ++   C LKKSLYGLK  PR WY RFD F V+
Sbjct: 1051 SEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVS 1084


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  141 bits (356), Expect = 3e-31
 Identities = 87/225 (38%), Positives = 120/225 (53%), Gaps = 28/225 (12%)
 Frame = -2

Query: 617  EVEHSQQVEQIPSIT--------RDQPQREIKPPSRLGWEDEVHFALMSSRG----DPTT 474
            EVE+S++ ++ P  T        RD+ +R I PP+R   E  V FAL+        +P +
Sbjct: 782  EVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQS 841

Query: 473  YNEAIRSNESNSWMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEES 294
            Y EA+ S +   W  A   EM++L  N  WDLV KPKDR I+  +W+F+ K  I   E +
Sbjct: 842  YQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPT 901

Query: 293  KYNARLVGKGFSQKERIDYDDIFSPVVKHTSIRV----------XXXXXXXXXGHLHG-L 147
            ++ ARLV KG++Q+E +DY +IF+PVVKH SIR+                     LHG L
Sbjct: 902  RFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDL 961

Query: 146  TQMIDSRKCVGRTMCT-----CRLKKSLYGLK*FPR*WYLRFDTF 27
             + +   +  G    +     CRLKKSLYGLK  PR W  RFD F
Sbjct: 962  EEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRF 1006


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  141 bits (356), Expect = 3e-31
 Identities = 80/216 (37%), Positives = 120/216 (55%), Gaps = 22/216 (10%)
 Frame = -2

Query: 599  QVEQIPSITRDQPQREIKPPSRLGWEDEVHFALMSSRG------DPTTYNEAIRSNESNS 438
            Q+E+   I + + +R  KPP RL  E  + +  +S         +P TY EA+R  +S +
Sbjct: 772  QLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSEN 831

Query: 437  WMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFS 258
            W+ AM +EM++L  NS W++VP PK +  +  KW+F++KE +   E  KY ARLV +G+S
Sbjct: 832  WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYS 891

Query: 257  QKERIDYDDIFSPVVKHTSIR----------VXXXXXXXXXGHLHGLTQ---MIDSRK-- 123
            Q   +DY+D+FSPVVKH+SIR          +           LHG  +    +D  +  
Sbjct: 892  QIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGF 951

Query: 122  -CVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
               G+    C+LK+SLYGLK  PR W  RFD+F ++
Sbjct: 952  IVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLS 987


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  141 bits (356), Expect = 3e-31
 Identities = 80/216 (37%), Positives = 120/216 (55%), Gaps = 22/216 (10%)
 Frame = -2

Query: 599  QVEQIPSITRDQPQREIKPPSRLGWEDEVHFALMSSRG------DPTTYNEAIRSNESNS 438
            Q+E+   I + + +R  KPP RL  E  + +  +S         +P TY EA+R  +S +
Sbjct: 772  QLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSEN 831

Query: 437  WMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFS 258
            W+ AM +EM++L  NS W++VP PK +  +  KW+F++KE +   E  KY ARLV +G+S
Sbjct: 832  WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYS 891

Query: 257  QKERIDYDDIFSPVVKHTSIR----------VXXXXXXXXXGHLHGLTQ---MIDSRK-- 123
            Q   +DY+D+FSPVVKH+SIR          +           LHG  +    +D  +  
Sbjct: 892  QIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGF 951

Query: 122  -CVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
               G+    C+LK+SLYGLK  PR W  RFD+F ++
Sbjct: 952  IVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLS 987


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  141 bits (356), Expect = 3e-31
 Identities = 80/216 (37%), Positives = 120/216 (55%), Gaps = 22/216 (10%)
 Frame = -2

Query: 599  QVEQIPSITRDQPQREIKPPSRLGWEDEVHFALMSSRG------DPTTYNEAIRSNESNS 438
            Q+E+   I + + +R  KPP RL  E  + +  +S         +P TY EA+R  +S +
Sbjct: 772  QLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSEN 831

Query: 437  WMGAMTKEMEALCNNSVWDLVPKPKDRHIVDSKWVFQKKEAIYKDEESKYNARLVGKGFS 258
            W+ AM +EM++L  NS W++VP PK +  +  KW+F++KE +   E  KY ARLV +G+S
Sbjct: 832  WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYS 891

Query: 257  QKERIDYDDIFSPVVKHTSIR----------VXXXXXXXXXGHLHGLTQ---MIDSRK-- 123
            Q   +DY+D+FSPVVKH+SIR          +           LHG  +    +D  +  
Sbjct: 892  QIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGF 951

Query: 122  -CVGRTMCTCRLKKSLYGLK*FPR*WYLRFDTFYVA 18
               G+    C+LK+SLYGLK  PR W  RFD+F ++
Sbjct: 952  IVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLS 987