BLASTX nr result

ID: Cornus23_contig00018788 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00018788
         (511 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009041168.1| ribosomal protein subunit S4 (mitochondrion)...   184   2e-44
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|...   180   4e-43
gb|AAW47276.1| ribosomal protein S4 [Platanus occidentalis]           177   3e-42
ref|YP_008999590.1| ribosomal protein S4 (mitochondrion) [Vaccin...   176   6e-42
ref|XP_002535173.1| Mitochondrial ribosomal protein S4, putative...   174   2e-41
ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinu...   174   2e-41
gb|AKJ25867.1| ribosomal protein S4, partial (mitochondrion) [Fr...   173   4e-41
gb|AAW47270.1| ribosomal protein S4 [Calycanthus floridus]            172   7e-41
gb|AAW47278.1| ribosomal protein S4 [Lonicera sp. Bergthorsson 0...   172   7e-41
ref|YP_006291840.1| ribosomal protein S4 (mitochondrion) [Daucus...   172   7e-41
ref|YP_002608399.1| ribosomal protein S4 [Vitis vinifera] gi|209...   172   1e-40
gb|AHJ81020.1| ribosomal protein S4 (mitochondrion) [Panax ginseng]   171   2e-40
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) (mitoch...   171   2e-40
gb|AHX81382.1| ribosomal protein S4 (mitochondrion) [Couepia gui...   171   3e-40
gb|AHX81376.1| ribosomal protein S4 (mitochondrion) [Hirtella ra...   171   3e-40
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ...   170   3e-40
gb|ALJ78540.1| ribosomal protein S4, partial (mitochondrion) [Ma...   169   6e-40
gb|ALF04067.1| ribosomal protein S4 (mitochondrion) [Cannabis sa...   169   6e-40
ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259...   169   6e-40
emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus dome...   169   6e-40

>ref|YP_009041168.1| ribosomal protein subunit S4 (mitochondrion) [Rhazya stricta]
           gi|645929292|gb|AIB08815.1| ribosomal protein subunit S4
           (mitochondrion) [Rhazya stricta]
          Length = 393

 Score =  184 bits (467), Expect = 2e-44
 Identities = 89/100 (89%), Positives = 92/100 (92%)
 Frame = +3

Query: 210 YLSNRRTQARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 389
           + S    QARQ ISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI
Sbjct: 146 HFSETIPQARQPISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 205

Query: 390 LVEKIIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
            +EKIIGKFLD P+RMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 206 SIEKIIGKFLDHPIRMWRRTKTEWFRLLKTKRGCRLLLKS 245


>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
           gi|259156791|gb|ACV96653.1| ribosomal protein S4
           [Citrullus lanatus]
          Length = 355

 Score =  180 bits (456), Expect = 4e-43
 Identities = 88/100 (88%), Positives = 90/100 (90%)
 Frame = +3

Query: 210 YLSNRRTQARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 389
           + S    QARQ ISHRRVCVN GMVSITHFKVSHGD+ISFQENDAR RGEEIRRFFYIEI
Sbjct: 108 HFSETIPQARQLISHRRVCVNKGMVSITHFKVSHGDLISFQENDARIRGEEIRRFFYIEI 167

Query: 390 LVEKIIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           LVEKIIGKFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 168 LVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 207


>gb|AAW47276.1| ribosomal protein S4 [Platanus occidentalis]
          Length = 320

 Score =  177 bits (449), Expect = 3e-42
 Identities = 86/93 (92%), Positives = 88/93 (94%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITH KVSHGD+ISFQENDARTRGEEIRR FYI+I VEKIIG
Sbjct: 105 QARQPISHRRVCVNNGMVSITHLKVSHGDLISFQENDARTRGEEIRRSFYIDISVEKIIG 164

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 165 KFLDHPVRMWRRTKTEWFRLLKTKRGCRLLLKS 197


>ref|YP_008999590.1| ribosomal protein S4 (mitochondrion) [Vaccinium macrocarpon]
           gi|549531665|gb|AGX28804.1| ribosomal protein S4
           (mitochondrion) [Vaccinium macrocarpon]
          Length = 276

 Score =  176 bits (446), Expect = 6e-42
 Identities = 86/93 (92%), Positives = 87/93 (93%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNG+VSITHFKVSHGDIISFQEND RTRGEEIRR FYIEI VEKIIG
Sbjct: 36  QARQPISHRRVCVNNGIVSITHFKVSHGDIISFQENDGRTRGEEIRRSFYIEISVEKIIG 95

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTKTEWFRLLKTKRGCRLL KS
Sbjct: 96  KFLDHPVRMWRRTKTEWFRLLKTKRGCRLLRKS 128


>ref|XP_002535173.1| Mitochondrial ribosomal protein S4, putative [Ricinus communis]
           gi|223523829|gb|EEF27209.1| Mitochondrial ribosomal
           protein S4, putative [Ricinus communis]
          Length = 276

 Score =  174 bits (441), Expect = 2e-41
 Identities = 85/93 (91%), Positives = 86/93 (92%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITH KVSHGDIISF+ NDAR RGEEIRRFFYIEI VEKIIG
Sbjct: 36  QARQPISHRRVCVNNGMVSITHLKVSHGDIISFKANDARIRGEEIRRFFYIEISVEKIIG 95

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 96  KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 128


>ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinus communis]
           gi|322394289|gb|ADW96046.1| ribosomal protein S4
           (mitochondrion) [Ricinus communis]
          Length = 352

 Score =  174 bits (441), Expect = 2e-41
 Identities = 85/93 (91%), Positives = 86/93 (92%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITH KVSHGDIISF+ NDAR RGEEIRRFFYIEI VEKIIG
Sbjct: 112 QARQPISHRRVCVNNGMVSITHLKVSHGDIISFKANDARIRGEEIRRFFYIEISVEKIIG 171

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 172 KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 204


>gb|AKJ25867.1| ribosomal protein S4, partial (mitochondrion) [Francoa sonchifolia]
          Length = 348

 Score =  173 bits (439), Expect = 4e-41
 Identities = 85/93 (91%), Positives = 86/93 (92%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITH KVSHGD+ISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 108 QARQPISHRRVCVNNGMVSITHVKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIG 167

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLDRPVRMWRRTKTEWF LLKTKRGCR LLKS
Sbjct: 168 KFLDRPVRMWRRTKTEWFHLLKTKRGCRRLLKS 200


>gb|AAW47270.1| ribosomal protein S4 [Calycanthus floridus]
          Length = 319

 Score =  172 bits (437), Expect = 7e-41
 Identities = 84/93 (90%), Positives = 87/93 (93%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITH KVSHGD+ISF+ENDART GEEIRR FYI+I VEKIIG
Sbjct: 105 QARQPISHRRVCVNNGMVSITHLKVSHGDLISFKENDARTCGEEIRRSFYIDISVEKIIG 164

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 165 KFLDHPVRMWRRTKTEWFRLLKTKRGCRLLLKS 197


>gb|AAW47278.1| ribosomal protein S4 [Lonicera sp. Bergthorsson 0301]
          Length = 318

 Score =  172 bits (437), Expect = 7e-41
 Identities = 87/96 (90%), Positives = 88/96 (91%), Gaps = 3/96 (3%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTR---GEEIRRFFYIEILVEK 401
           QARQ ISHRRVCVNNGMVSITHFKVSHGD+ISFQENDART    GEEIRR FYIEI VEK
Sbjct: 100 QARQPISHRRVCVNNGMVSITHFKVSHGDLISFQENDARTPNCLGEEIRRSFYIEISVEK 159

Query: 402 IIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           IIGKFLD PVRMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 160 IIGKFLDHPVRMWRRTKTEWFRLLKTKRGCRLLLKS 195


>ref|YP_006291840.1| ribosomal protein S4 (mitochondrion) [Daucus carota subsp. sativus]
           gi|374081953|gb|AEY81145.1| ribosomal protein S4
           (mitochondrion) [Daucus carota subsp. sativus]
          Length = 279

 Score =  172 bits (437), Expect = 7e-41
 Identities = 85/92 (92%), Positives = 85/92 (92%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITHFKVS GDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 36  QARQPISHRRVCVNNGMVSITHFKVSRGDIISFQENDARARGEEIRRSFYIEISVEKIIG 95

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLK 506
           KF D PVRMWRRTKTEWFRLLKTKRGCRLLLK
Sbjct: 96  KFRDHPVRMWRRTKTEWFRLLKTKRGCRLLLK 127


>ref|YP_002608399.1| ribosomal protein S4 [Vitis vinifera] gi|209954196|emb|CAQ77661.1|
           ribosomal protein S4 [Vitis vinifera]
           gi|239764730|gb|ACS15201.1| ribosomal protein S4 [Vitis
           vinifera]
          Length = 362

 Score =  172 bits (435), Expect = 1e-40
 Identities = 85/93 (91%), Positives = 85/93 (91%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNN MVSITH KVSHGDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 122 QARQPISHRRVCVNNRMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIG 181

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 182 KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 214


>gb|AHJ81020.1| ribosomal protein S4 (mitochondrion) [Panax ginseng]
          Length = 355

 Score =  171 bits (434), Expect = 2e-40
 Identities = 84/92 (91%), Positives = 85/92 (92%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITHFKVSHGDIISF+ENDAR RGEEIRR FYIEI VEK IG
Sbjct: 120 QARQPISHRRVCVNNGMVSITHFKVSHGDIISFKENDARARGEEIRRSFYIEISVEKRIG 179

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLK 506
           KF D PVRMWRRTKTEWFRLLKTKRGCRLLLK
Sbjct: 180 KFRDHPVRMWRRTKTEWFRLLKTKRGCRLLLK 211


>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) (mitochondrion) [Asclepias
           syriaca] gi|556562347|gb|AGZ63043.1| ribosomal protein
           S4 (mitochondrion) (mitochondrion) [Asclepias syriaca]
          Length = 274

 Score =  171 bits (434), Expect = 2e-40
 Identities = 84/93 (90%), Positives = 88/93 (94%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITHFKVSHGD+ISFQEN ART  +EIRRFFYIEIL+EKIIG
Sbjct: 36  QARQLISHRRVCVNNGMVSITHFKVSHGDLISFQENVART--QEIRRFFYIEILIEKIIG 93

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD P+RMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 94  KFLDHPIRMWRRTKTEWFRLLKTKRGCRLLLKS 126


>gb|AHX81382.1| ribosomal protein S4 (mitochondrion) [Couepia guianensis]
          Length = 356

 Score =  171 bits (432), Expect = 3e-40
 Identities = 84/93 (90%), Positives = 85/93 (91%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHR+VCVNNGMVSITH KVSHGDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 113 QARQLISHRKVCVNNGMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIG 172

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD  VRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 173 KFLDHSVRMWRRTKTEWFHLLKTKRGCRLLLKS 205


>gb|AHX81376.1| ribosomal protein S4 (mitochondrion) [Hirtella racemosa]
           gi|618627175|gb|AHX81379.1| ribosomal protein S4
           (mitochondrion) [Hirtella physophora]
           gi|618627183|gb|AHX81385.1| ribosomal protein S4
           (mitochondrion) [Licania heteromorpha]
           gi|618627187|gb|AHX81388.1| ribosomal protein S4
           (mitochondrion) [Chrysobalanus icaco]
           gi|618627191|gb|AHX81391.1| ribosomal protein S4
           (mitochondrion) [Parinari campestris]
           gi|618627195|gb|AHX81394.1| ribosomal protein S4
           (mitochondrion) [Licania sprucei]
           gi|618627199|gb|AHX81397.1| ribosomal protein S4
           (mitochondrion) [Licania alba]
          Length = 353

 Score =  171 bits (432), Expect = 3e-40
 Identities = 84/93 (90%), Positives = 85/93 (91%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHR+VCVNNGMVSITH KVSHGDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 113 QARQLISHRKVCVNNGMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIG 172

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD  VRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 173 KFLDHSVRMWRRTKTEWFHLLKTKRGCRLLLKS 205


>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
           gi|357197350|gb|AET62946.1| ribosomal protein S4
           (mitochondrion) [Lotus japonicus]
          Length = 358

 Score =  170 bits (431), Expect = 3e-40
 Identities = 84/93 (90%), Positives = 85/93 (91%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNN MVSIT  KVSHGD+ISFQENDAR RGEEIRR FYIEILVEKIIG
Sbjct: 117 QARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEIRRSFYIEILVEKIIG 176

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 177 KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 209


>gb|ALJ78540.1| ribosomal protein S4, partial (mitochondrion) [Malus hupehensis
           var. mengshanensis]
          Length = 359

 Score =  169 bits (429), Expect = 6e-40
 Identities = 83/93 (89%), Positives = 84/93 (90%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISH RVCVNNGMVSITHFKVSHGD+ISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 119 QARQPISHGRVCVNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIG 178

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTK EWF LLKT RGCRLLLKS
Sbjct: 179 KFLDHPVRMWRRTKAEWFHLLKTHRGCRLLLKS 211


>gb|ALF04067.1| ribosomal protein S4 (mitochondrion) [Cannabis sativa]
          Length = 352

 Score =  169 bits (429), Expect = 6e-40
 Identities = 83/93 (89%), Positives = 85/93 (91%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISHRRVCVNNGMVSITH KVSHGD+ISFQENDAR RGEEIRR FY EI VEKIIG
Sbjct: 112 QARQPISHRRVCVNNGMVSITHLKVSHGDLISFQENDARIRGEEIRRSFYKEISVEKIIG 171

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFL+ PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 172 KFLNHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 204


>ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1|
           ribosomal protein S4 [Cucurbita pepo]
          Length = 356

 Score =  169 bits (429), Expect = 6e-40
 Identities = 83/100 (83%), Positives = 87/100 (87%)
 Frame = +3

Query: 210 YLSNRRTQARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 389
           + S+   QARQ ISHRRVCVN GMV ITHFKVSHGD+IS +ENDAR RGEEIRR FYIEI
Sbjct: 108 HFSSTLPQARQLISHRRVCVNKGMVPITHFKVSHGDLISLKENDARIRGEEIRRSFYIEI 167

Query: 390 LVEKIIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
            VEKIIGKFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 168 SVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 207


>emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus domestica]
          Length = 359

 Score =  169 bits (429), Expect = 6e-40
 Identities = 83/93 (89%), Positives = 84/93 (90%)
 Frame = +3

Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
           QARQ ISH RVCVNNGMVSITHFKVSHGD+ISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 119 QARQPISHGRVCVNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIG 178

Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
           KFLD PVRMWRRTK EWF LLKT RGCRLLLKS
Sbjct: 179 KFLDHPVRMWRRTKAEWFHLLKTHRGCRLLLKS 211


Top