BLASTX nr result
ID: Cornus23_contig00018788
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00018788
(511 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009041168.1| ribosomal protein subunit S4 (mitochondrion)... 184 2e-44
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 180 4e-43
gb|AAW47276.1| ribosomal protein S4 [Platanus occidentalis] 177 3e-42
ref|YP_008999590.1| ribosomal protein S4 (mitochondrion) [Vaccin... 176 6e-42
ref|XP_002535173.1| Mitochondrial ribosomal protein S4, putative... 174 2e-41
ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinu... 174 2e-41
gb|AKJ25867.1| ribosomal protein S4, partial (mitochondrion) [Fr... 173 4e-41
gb|AAW47270.1| ribosomal protein S4 [Calycanthus floridus] 172 7e-41
gb|AAW47278.1| ribosomal protein S4 [Lonicera sp. Bergthorsson 0... 172 7e-41
ref|YP_006291840.1| ribosomal protein S4 (mitochondrion) [Daucus... 172 7e-41
ref|YP_002608399.1| ribosomal protein S4 [Vitis vinifera] gi|209... 172 1e-40
gb|AHJ81020.1| ribosomal protein S4 (mitochondrion) [Panax ginseng] 171 2e-40
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) (mitoch... 171 2e-40
gb|AHX81382.1| ribosomal protein S4 (mitochondrion) [Couepia gui... 171 3e-40
gb|AHX81376.1| ribosomal protein S4 (mitochondrion) [Hirtella ra... 171 3e-40
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 170 3e-40
gb|ALJ78540.1| ribosomal protein S4, partial (mitochondrion) [Ma... 169 6e-40
gb|ALF04067.1| ribosomal protein S4 (mitochondrion) [Cannabis sa... 169 6e-40
ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259... 169 6e-40
emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus dome... 169 6e-40
>ref|YP_009041168.1| ribosomal protein subunit S4 (mitochondrion) [Rhazya stricta]
gi|645929292|gb|AIB08815.1| ribosomal protein subunit S4
(mitochondrion) [Rhazya stricta]
Length = 393
Score = 184 bits (467), Expect = 2e-44
Identities = 89/100 (89%), Positives = 92/100 (92%)
Frame = +3
Query: 210 YLSNRRTQARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 389
+ S QARQ ISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI
Sbjct: 146 HFSETIPQARQPISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 205
Query: 390 LVEKIIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
+EKIIGKFLD P+RMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 206 SIEKIIGKFLDHPIRMWRRTKTEWFRLLKTKRGCRLLLKS 245
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 180 bits (456), Expect = 4e-43
Identities = 88/100 (88%), Positives = 90/100 (90%)
Frame = +3
Query: 210 YLSNRRTQARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 389
+ S QARQ ISHRRVCVN GMVSITHFKVSHGD+ISFQENDAR RGEEIRRFFYIEI
Sbjct: 108 HFSETIPQARQLISHRRVCVNKGMVSITHFKVSHGDLISFQENDARIRGEEIRRFFYIEI 167
Query: 390 LVEKIIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
LVEKIIGKFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 168 LVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 207
>gb|AAW47276.1| ribosomal protein S4 [Platanus occidentalis]
Length = 320
Score = 177 bits (449), Expect = 3e-42
Identities = 86/93 (92%), Positives = 88/93 (94%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITH KVSHGD+ISFQENDARTRGEEIRR FYI+I VEKIIG
Sbjct: 105 QARQPISHRRVCVNNGMVSITHLKVSHGDLISFQENDARTRGEEIRRSFYIDISVEKIIG 164
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 165 KFLDHPVRMWRRTKTEWFRLLKTKRGCRLLLKS 197
>ref|YP_008999590.1| ribosomal protein S4 (mitochondrion) [Vaccinium macrocarpon]
gi|549531665|gb|AGX28804.1| ribosomal protein S4
(mitochondrion) [Vaccinium macrocarpon]
Length = 276
Score = 176 bits (446), Expect = 6e-42
Identities = 86/93 (92%), Positives = 87/93 (93%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNG+VSITHFKVSHGDIISFQEND RTRGEEIRR FYIEI VEKIIG
Sbjct: 36 QARQPISHRRVCVNNGIVSITHFKVSHGDIISFQENDGRTRGEEIRRSFYIEISVEKIIG 95
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTKTEWFRLLKTKRGCRLL KS
Sbjct: 96 KFLDHPVRMWRRTKTEWFRLLKTKRGCRLLRKS 128
>ref|XP_002535173.1| Mitochondrial ribosomal protein S4, putative [Ricinus communis]
gi|223523829|gb|EEF27209.1| Mitochondrial ribosomal
protein S4, putative [Ricinus communis]
Length = 276
Score = 174 bits (441), Expect = 2e-41
Identities = 85/93 (91%), Positives = 86/93 (92%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITH KVSHGDIISF+ NDAR RGEEIRRFFYIEI VEKIIG
Sbjct: 36 QARQPISHRRVCVNNGMVSITHLKVSHGDIISFKANDARIRGEEIRRFFYIEISVEKIIG 95
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 96 KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 128
>ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinus communis]
gi|322394289|gb|ADW96046.1| ribosomal protein S4
(mitochondrion) [Ricinus communis]
Length = 352
Score = 174 bits (441), Expect = 2e-41
Identities = 85/93 (91%), Positives = 86/93 (92%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITH KVSHGDIISF+ NDAR RGEEIRRFFYIEI VEKIIG
Sbjct: 112 QARQPISHRRVCVNNGMVSITHLKVSHGDIISFKANDARIRGEEIRRFFYIEISVEKIIG 171
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 172 KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 204
>gb|AKJ25867.1| ribosomal protein S4, partial (mitochondrion) [Francoa sonchifolia]
Length = 348
Score = 173 bits (439), Expect = 4e-41
Identities = 85/93 (91%), Positives = 86/93 (92%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITH KVSHGD+ISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 108 QARQPISHRRVCVNNGMVSITHVKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIG 167
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLDRPVRMWRRTKTEWF LLKTKRGCR LLKS
Sbjct: 168 KFLDRPVRMWRRTKTEWFHLLKTKRGCRRLLKS 200
>gb|AAW47270.1| ribosomal protein S4 [Calycanthus floridus]
Length = 319
Score = 172 bits (437), Expect = 7e-41
Identities = 84/93 (90%), Positives = 87/93 (93%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITH KVSHGD+ISF+ENDART GEEIRR FYI+I VEKIIG
Sbjct: 105 QARQPISHRRVCVNNGMVSITHLKVSHGDLISFKENDARTCGEEIRRSFYIDISVEKIIG 164
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 165 KFLDHPVRMWRRTKTEWFRLLKTKRGCRLLLKS 197
>gb|AAW47278.1| ribosomal protein S4 [Lonicera sp. Bergthorsson 0301]
Length = 318
Score = 172 bits (437), Expect = 7e-41
Identities = 87/96 (90%), Positives = 88/96 (91%), Gaps = 3/96 (3%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTR---GEEIRRFFYIEILVEK 401
QARQ ISHRRVCVNNGMVSITHFKVSHGD+ISFQENDART GEEIRR FYIEI VEK
Sbjct: 100 QARQPISHRRVCVNNGMVSITHFKVSHGDLISFQENDARTPNCLGEEIRRSFYIEISVEK 159
Query: 402 IIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
IIGKFLD PVRMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 160 IIGKFLDHPVRMWRRTKTEWFRLLKTKRGCRLLLKS 195
>ref|YP_006291840.1| ribosomal protein S4 (mitochondrion) [Daucus carota subsp. sativus]
gi|374081953|gb|AEY81145.1| ribosomal protein S4
(mitochondrion) [Daucus carota subsp. sativus]
Length = 279
Score = 172 bits (437), Expect = 7e-41
Identities = 85/92 (92%), Positives = 85/92 (92%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITHFKVS GDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 36 QARQPISHRRVCVNNGMVSITHFKVSRGDIISFQENDARARGEEIRRSFYIEISVEKIIG 95
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLK 506
KF D PVRMWRRTKTEWFRLLKTKRGCRLLLK
Sbjct: 96 KFRDHPVRMWRRTKTEWFRLLKTKRGCRLLLK 127
>ref|YP_002608399.1| ribosomal protein S4 [Vitis vinifera] gi|209954196|emb|CAQ77661.1|
ribosomal protein S4 [Vitis vinifera]
gi|239764730|gb|ACS15201.1| ribosomal protein S4 [Vitis
vinifera]
Length = 362
Score = 172 bits (435), Expect = 1e-40
Identities = 85/93 (91%), Positives = 85/93 (91%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNN MVSITH KVSHGDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 122 QARQPISHRRVCVNNRMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIG 181
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 182 KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 214
>gb|AHJ81020.1| ribosomal protein S4 (mitochondrion) [Panax ginseng]
Length = 355
Score = 171 bits (434), Expect = 2e-40
Identities = 84/92 (91%), Positives = 85/92 (92%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITHFKVSHGDIISF+ENDAR RGEEIRR FYIEI VEK IG
Sbjct: 120 QARQPISHRRVCVNNGMVSITHFKVSHGDIISFKENDARARGEEIRRSFYIEISVEKRIG 179
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLK 506
KF D PVRMWRRTKTEWFRLLKTKRGCRLLLK
Sbjct: 180 KFRDHPVRMWRRTKTEWFRLLKTKRGCRLLLK 211
>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) (mitochondrion) [Asclepias
syriaca] gi|556562347|gb|AGZ63043.1| ribosomal protein
S4 (mitochondrion) (mitochondrion) [Asclepias syriaca]
Length = 274
Score = 171 bits (434), Expect = 2e-40
Identities = 84/93 (90%), Positives = 88/93 (94%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITHFKVSHGD+ISFQEN ART +EIRRFFYIEIL+EKIIG
Sbjct: 36 QARQLISHRRVCVNNGMVSITHFKVSHGDLISFQENVART--QEIRRFFYIEILIEKIIG 93
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD P+RMWRRTKTEWFRLLKTKRGCRLLLKS
Sbjct: 94 KFLDHPIRMWRRTKTEWFRLLKTKRGCRLLLKS 126
>gb|AHX81382.1| ribosomal protein S4 (mitochondrion) [Couepia guianensis]
Length = 356
Score = 171 bits (432), Expect = 3e-40
Identities = 84/93 (90%), Positives = 85/93 (91%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHR+VCVNNGMVSITH KVSHGDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 113 QARQLISHRKVCVNNGMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIG 172
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD VRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 173 KFLDHSVRMWRRTKTEWFHLLKTKRGCRLLLKS 205
>gb|AHX81376.1| ribosomal protein S4 (mitochondrion) [Hirtella racemosa]
gi|618627175|gb|AHX81379.1| ribosomal protein S4
(mitochondrion) [Hirtella physophora]
gi|618627183|gb|AHX81385.1| ribosomal protein S4
(mitochondrion) [Licania heteromorpha]
gi|618627187|gb|AHX81388.1| ribosomal protein S4
(mitochondrion) [Chrysobalanus icaco]
gi|618627191|gb|AHX81391.1| ribosomal protein S4
(mitochondrion) [Parinari campestris]
gi|618627195|gb|AHX81394.1| ribosomal protein S4
(mitochondrion) [Licania sprucei]
gi|618627199|gb|AHX81397.1| ribosomal protein S4
(mitochondrion) [Licania alba]
Length = 353
Score = 171 bits (432), Expect = 3e-40
Identities = 84/93 (90%), Positives = 85/93 (91%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHR+VCVNNGMVSITH KVSHGDIISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 113 QARQLISHRKVCVNNGMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIG 172
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD VRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 173 KFLDHSVRMWRRTKTEWFHLLKTKRGCRLLLKS 205
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 170 bits (431), Expect = 3e-40
Identities = 84/93 (90%), Positives = 85/93 (91%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNN MVSIT KVSHGD+ISFQENDAR RGEEIRR FYIEILVEKIIG
Sbjct: 117 QARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEIRRSFYIEILVEKIIG 176
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 177 KFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 209
>gb|ALJ78540.1| ribosomal protein S4, partial (mitochondrion) [Malus hupehensis
var. mengshanensis]
Length = 359
Score = 169 bits (429), Expect = 6e-40
Identities = 83/93 (89%), Positives = 84/93 (90%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISH RVCVNNGMVSITHFKVSHGD+ISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 119 QARQPISHGRVCVNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIG 178
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTK EWF LLKT RGCRLLLKS
Sbjct: 179 KFLDHPVRMWRRTKAEWFHLLKTHRGCRLLLKS 211
>gb|ALF04067.1| ribosomal protein S4 (mitochondrion) [Cannabis sativa]
Length = 352
Score = 169 bits (429), Expect = 6e-40
Identities = 83/93 (89%), Positives = 85/93 (91%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISHRRVCVNNGMVSITH KVSHGD+ISFQENDAR RGEEIRR FY EI VEKIIG
Sbjct: 112 QARQPISHRRVCVNNGMVSITHLKVSHGDLISFQENDARIRGEEIRRSFYKEISVEKIIG 171
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFL+ PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 172 KFLNHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 204
>ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1|
ribosomal protein S4 [Cucurbita pepo]
Length = 356
Score = 169 bits (429), Expect = 6e-40
Identities = 83/100 (83%), Positives = 87/100 (87%)
Frame = +3
Query: 210 YLSNRRTQARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEI 389
+ S+ QARQ ISHRRVCVN GMV ITHFKVSHGD+IS +ENDAR RGEEIRR FYIEI
Sbjct: 108 HFSSTLPQARQLISHRRVCVNKGMVPITHFKVSHGDLISLKENDARIRGEEIRRSFYIEI 167
Query: 390 LVEKIIGKFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
VEKIIGKFLD PVRMWRRTKTEWF LLKTKRGCRLLLKS
Sbjct: 168 SVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKS 207
>emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus domestica]
Length = 359
Score = 169 bits (429), Expect = 6e-40
Identities = 83/93 (89%), Positives = 84/93 (90%)
Frame = +3
Query: 231 QARQRISHRRVCVNNGMVSITHFKVSHGDIISFQENDARTRGEEIRRFFYIEILVEKIIG 410
QARQ ISH RVCVNNGMVSITHFKVSHGD+ISFQENDAR RGEEIRR FYIEI VEKIIG
Sbjct: 119 QARQPISHGRVCVNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIG 178
Query: 411 KFLDRPVRMWRRTKTEWFRLLKTKRGCRLLLKS 509
KFLD PVRMWRRTK EWF LLKT RGCRLLLKS
Sbjct: 179 KFLDHPVRMWRRTKAEWFHLLKTHRGCRLLLKS 211