BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00016906
         (1433 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (ch...   881   0.0  
gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (ch...   877   0.0  
gb|ADD31173.1| RNA polymerase beta' subunit protein (chloroplast...   877   0.0  
gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (ch...   877   0.0  
ref|YP_009136386.1| RNA polymerase beta' subunit (chloroplast) [...   876   0.0  
ref|YP_009136302.1| RNA polymerase beta' subunit (chloroplast) [...   876   0.0  
ref|YP_009020029.1| RNA polymerase beta (plastid) [Prunus mume] ...   876   0.0  
ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina...   876   0.0  
ref|YP_009122716.1| RNA polymerase beta' subunit (chloroplast) [...   875   0.0  
ref|YP_004021656.1| RNA polymerase beta [Prunus persica] gi|6282...   875   0.0  
ref|YP_009161670.1| RNA polymerase beta (chloroplast) [Fatsia ja...   873   0.0  
gb|AII17883.1| RNA polymerase beta subunit, partial (chloroplast...   873   0.0  
gb|AII17877.1| RNA polymerase beta subunit, partial (chloroplast...   873   0.0  
ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus ...   872   0.0  
gb|AII17885.1| RNA polymerase beta subunit, partial (chloroplast...   870   0.0  
ref|YP_004935543.1| RNA polymerase beta' subunit (chloroplast) [...   870   0.0  
gb|AKZ29737.1| RNA polymerase beta (chloroplast) [Panax quinquef...   870   0.0  
gb|AII17896.1| RNA polymerase beta subunit, partial (chloroplast...   870   0.0  
gb|AII17880.1| RNA polymerase beta subunit, partial (chloroplast...   870   0.0  
ref|YP_086957.1| RNA polymerase beta' subunit [Panax ginseng] gi...   870   0.0  

>gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (chloroplast)
            [Hamamelis mollis]
          Length = 639

 Score =  881 bits (2277), Expect = 0.0
 Identities = 438/477 (91%), Positives = 444/477 (93%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA AIREQLA
Sbjct: 127  FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAAAIREQLA 186

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 187  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 246

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 247  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 306

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 307  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 366

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 367  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 426

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 427  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 486

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRR+YQ
Sbjct: 487  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ 546

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
             +RIDDN Y+YTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV ASREAP
Sbjct: 547  TKRIDDNNYEYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAP 603


>gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (chloroplast)
            [Daphniphyllum oldhamii]
          Length = 639

 Score =  877 bits (2266), Expect = 0.0
 Identities = 435/477 (91%), Positives = 441/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLA
Sbjct: 127  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLA 186

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 187  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 246

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 247  VLGLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 306

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGRSVI
Sbjct: 307  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVI 366

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QH+ASNIGVAKSKIREKEPIVWEIL EV
Sbjct: 367  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHIASNIGVAKSKIREKEPIVWEILHEV 426

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 427  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 486

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGN+RGIC NRYNPCNRR YQ
Sbjct: 487  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNQRGICANRYNPCNRRKYQ 546

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDSP WLRWRLDQRV ASREAP
Sbjct: 547  NERIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPFWLRWRLDQRVIASREAP 603


>gb|ADD31173.1| RNA polymerase beta' subunit protein (chloroplast) [Berberidopsis
            corallina]
          Length = 682

 Score =  877 bits (2265), Expect = 0.0
 Identities = 438/477 (91%), Positives = 443/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 145  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 204

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIID SLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTN++PEWM
Sbjct: 205  DLDLRIIIDDSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVKPEWM 264

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 265  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 324

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 325  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 385  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 444

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 445  MQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 504

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRR+YQ
Sbjct: 505  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ 564

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV ASREAP
Sbjct: 565  NERIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAP 621


>gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (chloroplast)
            [Rhodoleia championii]
          Length = 639

 Score =  877 bits (2265), Expect = 0.0
 Identities = 438/477 (91%), Positives = 442/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA AIREQLA
Sbjct: 127  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIREQLA 186

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 187  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 246

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 247  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 306

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 307  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 366

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 367  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 426

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 427  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 486

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRR+YQ
Sbjct: 487  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ 546

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDS LWLRWRLDQRV ASREAP
Sbjct: 547  NERIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSSLWLRWRLDQRVIASREAP 603


>ref|YP_009136386.1| RNA polymerase beta' subunit (chloroplast) [Prunus maximowiczii]
            gi|808178265|gb|AKC99596.1| RNA polymerase beta' subunit
            (chloroplast) [Prunus maximowiczii]
            gi|808178435|gb|AKC99764.1| RNA polymerase beta' subunit
            (chloroplast) [Prunus serrulata var. spontanea]
          Length = 683

 Score =  876 bits (2264), Expect = 0.0
 Identities = 434/477 (90%), Positives = 440/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 146  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 205

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 206  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 265

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 266  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQ 325

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 326  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 385

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QH ASNIGVAKSKIREKEP+VWEIL EV
Sbjct: 386  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEV 445

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 446  MQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLE 505

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRR+YQ
Sbjct: 506  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ 565

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            N+RIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV  SRE P
Sbjct: 566  NKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETP 622


>ref|YP_009136302.1| RNA polymerase beta' subunit (chloroplast) [Prunus yedoensis]
            gi|817527798|ref|YP_009136470.1| RNA polymerase beta'
            subunit (chloroplast) [Prunus padus]
            gi|808178180|gb|AKC99512.1| RNA polymerase beta' subunit
            (chloroplast) [Prunus yedoensis]
            gi|808178350|gb|AKC99680.1| RNA polymerase beta' subunit
            (chloroplast) [Prunus padus] gi|808178520|gb|AKC99848.1|
            RNA polymerase beta' subunit (chloroplast) [Prunus
            subhirtella var. subhirtella] gi|808178605|gb|AKC99932.1|
            RNA polymerase beta' subunit (chloroplast) [Prunus
            subhirtella var. subhirtella]
          Length = 683

 Score =  876 bits (2264), Expect = 0.0
 Identities = 434/477 (90%), Positives = 440/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 146  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 205

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 206  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 265

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 266  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQ 325

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 326  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 385

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QH ASNIGVAKSKIREKEP+VWEIL EV
Sbjct: 386  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEV 445

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 446  MQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLE 505

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRR+YQ
Sbjct: 506  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ 565

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            N+RIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV  SRE P
Sbjct: 566  NKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETP 622


>ref|YP_009020029.1| RNA polymerase beta (plastid) [Prunus mume]
            gi|589061044|gb|AHK26865.1| RNA polymerase beta (plastid)
            [Prunus mume]
          Length = 683

 Score =  876 bits (2264), Expect = 0.0
 Identities = 434/477 (90%), Positives = 440/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 146  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 205

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 206  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 265

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 266  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQ 325

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 326  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 385

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QH ASNIGVAKSKIREKEP+VWEIL EV
Sbjct: 386  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEV 445

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 446  MQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLE 505

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRR+YQ
Sbjct: 506  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ 565

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            N+RIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV  SRE P
Sbjct: 566  NKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETP 622


>ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina rupicola]
            gi|371532614|gb|AEX31724.1| RNA polymerase beta I subunit
            (chloroplast) [Pentactina rupicola]
          Length = 682

 Score =  876 bits (2264), Expect = 0.0
 Identities = 434/477 (90%), Positives = 441/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 145  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 204

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 205  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 264

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 265  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQ 324

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 325  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QH ASNIGVAKSKIREKEP+VWEILQEV
Sbjct: 385  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEV 444

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 445  MQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLE 504

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPC+RR+YQ
Sbjct: 505  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCHRRNYQ 564

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            N+RIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV  SRE P
Sbjct: 565  NKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETP 621


>ref|YP_009122716.1| RNA polymerase beta' subunit (chloroplast) [Dendropanax dentiger]
            gi|902686902|ref|YP_009159529.1| RpoC1 (chloroplast)
            [Dendropanax morbifer] gi|755571711|gb|AJK29847.1| RNA
            polymerase beta' subunit (chloroplast) [Dendropanax
            dentiger] gi|883743784|gb|AKQ20719.1| RpoC1 (chloroplast)
            [Dendropanax morbifer]
          Length = 689

 Score =  875 bits (2260), Expect = 0.0
 Identities = 434/477 (90%), Positives = 444/477 (93%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 152  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 211

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIID SLVEWKELGE+GPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 212  DLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 271

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 272  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 331

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 332  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 391

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 392  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 451

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 452  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 511

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRR+YQ
Sbjct: 512  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQ 571

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTK+KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV +++EAP
Sbjct: 572  NERIYDNNYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAP 628


>ref|YP_004021656.1| RNA polymerase beta [Prunus persica] gi|628249155|ref|YP_009024672.1|
            RNA polymerase beta (chloroplast) [Prunus kansuensis]
            gi|309321425|gb|ADO64966.1| RNA polymerase beta [Prunus
            persica] gi|597569097|gb|AHN13528.1| RNA polymerase beta
            (chloroplast) [Prunus kansuensis]
          Length = 683

 Score =  875 bits (2260), Expect = 0.0
 Identities = 433/477 (90%), Positives = 440/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTT+GFDTFRNREISTGAGAIREQLA
Sbjct: 146  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTRGFDTFRNREISTGAGAIREQLA 205

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 206  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 265

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 266  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQ 325

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 326  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 385

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QH ASNIGVAKSKIREKEP+VWEIL EV
Sbjct: 386  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEV 445

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 446  MQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLE 505

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNRR+YQ
Sbjct: 506  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ 565

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            N+RIDDN YKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV  SRE P
Sbjct: 566  NKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETP 622


>ref|YP_009161670.1| RNA polymerase beta (chloroplast) [Fatsia japonica]
            gi|902816251|gb|AKS10944.1| RNA polymerase beta
            (chloroplast) [Fatsia japonica]
          Length = 689

 Score =  873 bits (2256), Expect = 0.0
 Identities = 433/477 (90%), Positives = 443/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 152  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 211

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIID SLVEWKELGE+GPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 212  DLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 271

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 272  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 331

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 332  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 391

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHL SNIGVAKSKIREKEPIVWEILQEV
Sbjct: 392  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLVSNIGVAKSKIREKEPIVWEILQEV 451

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 452  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 511

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRR+YQ
Sbjct: 512  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQ 571

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTK+KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV +++EAP
Sbjct: 572  NERIYDNNYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAP 628


>gb|AII17883.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
            dentatum] gi|669215641|gb|AII17890.1| RNA polymerase beta
            subunit, partial (chloroplast) [Viburnum molle]
            gi|669215655|gb|AII17897.1| RNA polymerase beta subunit,
            partial (chloroplast) [Viburnum triphyllum]
          Length = 540

 Score =  873 bits (2255), Expect = 0.0
 Identities = 435/477 (91%), Positives = 442/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 4    FSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 63

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 64   DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 123

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 124  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 183

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 184  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 243

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 244  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 303

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 304  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 363

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRG+CVNRYNPCNRR+YQ
Sbjct: 364  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGVCVNRYNPCNRRNYQ 423

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTKEKEPFF NSYDAIGAYRQKRINLDSPLWLRWRLDQRV A+REAP
Sbjct: 424  NERIYDNNYKYTKEKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIAAREAP 480


>gb|AII17877.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
            acerifolium] gi|669215625|gb|AII17882.1| RNA polymerase
            beta subunit, partial (chloroplast) [Viburnum
            cylindricum] gi|669215629|gb|AII17884.1| RNA polymerase
            beta subunit, partial (chloroplast) [Viburnum dilatatum]
            gi|669215635|gb|AII17887.1| RNA polymerase beta subunit,
            partial (chloroplast) [Viburnum lantanoides]
            gi|669215643|gb|AII17891.1| RNA polymerase beta subunit,
            partial (chloroplast) [Viburnum opulus]
          Length = 540

 Score =  873 bits (2255), Expect = 0.0
 Identities = 435/477 (91%), Positives = 442/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 4    FSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 63

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 64   DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 123

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 124  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 183

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 184  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 243

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 244  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 303

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 304  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 363

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRG+CVNRYNPCNRR+YQ
Sbjct: 364  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGVCVNRYNPCNRRNYQ 423

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTKEKEPFF NSYDAIGAYRQKRINLDSPLWLRWRLDQRV A+REAP
Sbjct: 424  NERIYDNNYKYTKEKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIAAREAP 480


>ref|YP_004072453.1| RNA polymerase beta I subunit [Corynocarpus laevigata]
            gi|309252881|gb|ADO60301.1| RNA polymerase beta I subunit
            (chloroplast) [Corynocarpus laevigata]
          Length = 689

 Score =  872 bits (2254), Expect = 0.0
 Identities = 433/477 (90%), Positives = 442/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 152  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 211

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEG  GNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 212  DLDLRIIIDYSLVEWKELGEEGSAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 271

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 272  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQ 331

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 332  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 391

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QH ASNIGVAKSKIR+KEPIVWEILQEV
Sbjct: 392  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIRQKEPIVWEILQEV 451

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 452  MQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 511

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNR+++Q
Sbjct: 512  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQ 571

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NE+IDDN YKYTKEKEPFFCNSYDAIGAYRQKRI+LDSPLWLRWRLDQRV ASREAP
Sbjct: 572  NEKIDDNDYKYTKEKEPFFCNSYDAIGAYRQKRIHLDSPLWLRWRLDQRVIASREAP 628


>gb|AII17885.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
            erubescens] gi|669215633|gb|AII17886.1| RNA polymerase
            beta subunit, partial (chloroplast) [Viburnum
            grandiflorum] gi|669215639|gb|AII17889.1| RNA polymerase
            beta subunit, partial (chloroplast) [Viburnum lutescens]
            gi|669215649|gb|AII17894.1| RNA polymerase beta subunit,
            partial (chloroplast) [Viburnum sieboldii]
          Length = 540

 Score =  870 bits (2249), Expect = 0.0
 Identities = 434/477 (90%), Positives = 441/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 4    FSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 63

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 64   DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 123

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 124  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 183

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 184  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 243

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 244  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 303

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 304  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 363

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRG+CVNRYNPCNRR+YQ
Sbjct: 364  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGVCVNRYNPCNRRNYQ 423

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTKEKEP F NSYDAIGAYRQKRINLDSPLWLRWRLDQRV A+REAP
Sbjct: 424  NERIYDNNYKYTKEKEPLFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIAAREAP 480


>ref|YP_004935543.1| RNA polymerase beta' subunit (chloroplast) [Eleutherococcus
            senticosus] gi|347448197|gb|AEO92609.1| RNA polymerase
            beta' subunit (chloroplast) [Eleutherococcus senticosus]
          Length = 689

 Score =  870 bits (2249), Expect = 0.0
 Identities = 432/477 (90%), Positives = 442/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 152  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 211

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIID SLVEWKELGE+GPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 212  DLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 271

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 272  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 331

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 332  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 391

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 392  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 451

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE
Sbjct: 452  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 511

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSH NLLSPAIGDPISVPT DMLIGLYVLTSGNRRGICVNRYNPCNRR+YQ
Sbjct: 512  AQAEARLLMFSHTNLLSPAIGDPISVPTHDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQ 571

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTK+KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV +++EAP
Sbjct: 572  NERIYDNNYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAP 628


>gb|AKZ29737.1| RNA polymerase beta (chloroplast) [Panax quinquefolius]
          Length = 692

 Score =  870 bits (2248), Expect = 0.0
 Identities = 433/477 (90%), Positives = 443/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 155  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 214

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIID SLVEWKELGE+GPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 215  DLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 274

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 275  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 334

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 335  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 394

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 395  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 454

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 455  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 514

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRR+YQ
Sbjct: 515  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQ 574

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTK+KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV +++EAP
Sbjct: 575  NERIYDNNYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAP 631


>gb|AII17896.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum tinus]
          Length = 540

 Score =  870 bits (2248), Expect = 0.0
 Identities = 432/477 (90%), Positives = 442/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 4    FSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 63

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 64   DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 123

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 124  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 183

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 184  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 243

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 244  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 303

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 304  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 363

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPIS+PTQDMLIGLYVLTSGNRRG+CVNRYNPCNRR+YQ
Sbjct: 364  AQAEARLLMFSHMNLLSPAIGDPISIPTQDMLIGLYVLTSGNRRGVCVNRYNPCNRRNYQ 423

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NER+ DN YKYTKEKEPFF NSYDAIGAYRQKRINLDSPLWLRWRLDQRV A++EAP
Sbjct: 424  NERMYDNNYKYTKEKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIAAKEAP 480


>gb|AII17880.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
            cassinoides] gi|669215637|gb|AII17888.1| RNA polymerase
            beta subunit, partial (chloroplast) [Viburnum lentago]
            gi|669215647|gb|AII17893.1| RNA polymerase beta subunit,
            partial (chloroplast) [Viburnum punctatum]
          Length = 540

 Score =  870 bits (2248), Expect = 0.0
 Identities = 434/477 (90%), Positives = 441/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 4    FSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 63

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 64   DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 123

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 124  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 183

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 184  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 243

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 244  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 303

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 304  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 363

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRG+CVNRYNPCNR +YQ
Sbjct: 364  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGVCVNRYNPCNRGNYQ 423

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTKEKEPFF NSYDAIGAYRQKRINLDSPLWLRWRLDQRV A+REAP
Sbjct: 424  NERIYDNNYKYTKEKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIAAREAP 480


>ref|YP_086957.1| RNA polymerase beta' subunit [Panax ginseng]
            gi|884997636|ref|YP_009155419.1| RpoC1 (chloroplast)
            [Panax quinquefolius] gi|51235304|gb|AAT98500.1| RNA
            polymerase beta I subunit (chloroplast) [Panax ginseng]
            gi|506444454|gb|AGM15016.1| RNA polymerase beta' subunit
            (chloroplast) [Panax ginseng] gi|506444542|gb|AGM15102.1|
            RNA polymerase beta' subunit (chloroplast) [Panax
            ginseng] gi|506444658|gb|AGM15188.1| RNA polymerase beta'
            subunit (chloroplast) [Panax ginseng]
            gi|545484756|gb|AGW31948.1| RNA polymerase beta' subunit
            (chloroplast) [Panax ginseng] gi|723604093|gb|AIX97880.1|
            RpoC1 (chloroplast) [Panax ginseng]
            gi|723604181|gb|AIX97967.1| RpoC1 (chloroplast) [Panax
            ginseng] gi|723604265|gb|AIX98050.1| RpoC1 (chloroplast)
            [Panax ginseng] gi|723604351|gb|AIX98135.1| RpoC1
            (chloroplast) [Panax ginseng] gi|723604437|gb|AIX98220.1|
            RpoC1 (chloroplast) [Panax ginseng]
            gi|723604523|gb|AIX98305.1| RpoC1 (chloroplast) [Panax
            ginseng] gi|723604609|gb|AIX98390.1| RpoC1 (chloroplast)
            [Panax ginseng] gi|723604781|gb|AIX98560.1| RpoC1
            (chloroplast) [Panax ginseng] gi|744671687|gb|AJC99479.1|
            RpoC1 (chloroplast) [Panax quinquefolius]
            gi|744671798|gb|AJC99564.1| RpoC1 (chloroplast) [Panax
            ginseng] gi|744671906|gb|AJC99649.1| RpoC1 (chloroplast)
            [Panax ginseng]
          Length = 689

 Score =  870 bits (2248), Expect = 0.0
 Identities = 433/477 (90%), Positives = 443/477 (92%)
 Frame = +3

Query: 3    FSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 182
            FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA
Sbjct: 152  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLA 211

Query: 183  DLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWM 362
            DLDLRIIID SLVEWKELGE+GPTGNEWEDRK+GRRKDFLVRRMELAKHFIRTNIEPEWM
Sbjct: 212  DLDLRIIIDSSLVEWKELGEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWM 271

Query: 363  VXXXXXXXXXXXXXIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMCQ 542
            V             IIQIDGGKLMSSDINELYRRVIY               PGELVMCQ
Sbjct: 272  VLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQ 331

Query: 543  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 722
            EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI
Sbjct: 332  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 391

Query: 723  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIKQHLASNIGVAKSKIREKEPIVWEILQEV 902
            VVGPSLSLHRCGLPREIAIELFQTFVIRGLI+QHLASNIGVAKSKIREKEPIVWEILQEV
Sbjct: 392  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEV 451

Query: 903  MEGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1082
            M+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLE
Sbjct: 452  MQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLE 511

Query: 1083 AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRDYQ 1262
            AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRR+YQ
Sbjct: 512  AQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQ 571

Query: 1263 NERIDDNKYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVSASREAP 1433
            NERI DN YKYTK+KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRV +++EAP
Sbjct: 572  NERIYDNNYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAP 628