BLASTX nr result
ID: Cornus23_contig00015945
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00015945
(2312 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010252356.1| PREDICTED: probable mediator of RNA polymera... 427 e-116
ref|XP_012075305.1| PREDICTED: probable mediator of RNA polymera... 421 e-114
ref|XP_007048434.1| Transcription elongation factor (TFIIS) fami... 421 e-114
ref|XP_012075304.1| PREDICTED: probable mediator of RNA polymera... 417 e-113
ref|XP_008440997.1| PREDICTED: probable mediator of RNA polymera... 415 e-113
ref|XP_002530078.1| conserved hypothetical protein [Ricinus comm... 413 e-112
ref|XP_006427873.1| hypothetical protein CICLE_v10025964mg [Citr... 407 e-110
ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymera... 407 e-110
ref|XP_002265433.2| PREDICTED: probable mediator of RNA polymera... 406 e-110
gb|KDO53372.1| hypothetical protein CISIN_1g018587mg [Citrus sin... 405 e-110
ref|XP_010649433.1| PREDICTED: probable mediator of RNA polymera... 402 e-109
ref|XP_009613975.1| PREDICTED: probable mediator of RNA polymera... 401 e-108
ref|XP_009786138.1| PREDICTED: probable mediator of RNA polymera... 397 e-107
ref|XP_002279496.2| PREDICTED: probable mediator of RNA polymera... 396 e-107
ref|XP_011100935.1| PREDICTED: probable mediator of RNA polymera... 395 e-107
ref|XP_007011109.1| Transcription elongation factor (TFIIS) fami... 395 e-106
ref|XP_012451443.1| PREDICTED: probable mediator of RNA polymera... 394 e-106
ref|XP_012458765.1| PREDICTED: probable mediator of RNA polymera... 394 e-106
ref|XP_010027719.1| PREDICTED: probable mediator of RNA polymera... 390 e-105
ref|XP_010088726.1| hypothetical protein L484_016512 [Morus nota... 390 e-105
>ref|XP_010252356.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Nelumbo nucifera]
Length = 349
Score = 427 bits (1099), Expect = e-116
Identities = 228/356 (64%), Positives = 255/356 (71%), Gaps = 18/356 (5%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
M+ +DFR +L NS VD+WT IDTAI+VASLDY +ELK+RRD I+ERLY C+NC++
Sbjct: 1 MNFDDFRSILRNSGVDVWTFIDTAISVASLDYKNELKDRRDGIIERLYVPFVSGCQNCNL 60
Query: 2067 DRQTPNGQIT-----------------SSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXX 1939
D N T SS EG +G SPSTPQS
Sbjct: 61 DSTRQNCHETKKKVHQTRTEASIIKESSSIEGKRG-SPSTPQSNRDEDHDRSYGHP---- 115
Query: 1938 XGLFDDEEVKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKH 1759
FDDE+ KIL IKEHLEDPDQSEDSLV LLQ LADMD+TFK LKETDIGRHVNRLRKH
Sbjct: 116 ---FDDEQTKILAIKEHLEDPDQSEDSLVNLLQDLADMDLTFKTLKETDIGRHVNRLRKH 172
Query: 1758 SSNEVRKLVKHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVP 1579
SSNEVR+LVK LVRKWK+LVDEWVK N PGE A+S LIADGDSPQQN + QN HHQVP
Sbjct: 173 SSNEVRRLVKQLVRKWKELVDEWVKSNTPGETAASTLIADGDSPQQNPSKGAQNSHHQVP 232
Query: 1578 DFGYSPNPHNGSSGSDKNNSEPEPKPKVIPRREAPVKPLHSV-XXXXXXXXXSRPLRDTS 1402
D YSPNPHNGSS SDKNNSE E K K+IPRRE ++P SV R +D+S
Sbjct: 233 DVAYSPNPHNGSSSSDKNNSESERKEKIIPRREPQMRPTQSVPASTSVPPNKQREQKDSS 292
Query: 1401 IDLERLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGGFQGRN 1234
ID ERLASAR+RLHENYQEAQNAKKQRTIQVMDIH+IPKPKN+FF KNKGGFQ R+
Sbjct: 293 IDPERLASARRRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNSFFAKNKGGFQARH 348
>ref|XP_012075305.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X2 [Jatropha curcas]
Length = 347
Score = 421 bits (1083), Expect = e-114
Identities = 223/349 (63%), Positives = 257/349 (73%), Gaps = 11/349 (3%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD++DFR +L +S VD+WT I+TAI VAS D+G ELK RRD+IVE LY++ CRNCD
Sbjct: 1 MDIDDFRSILESSGVDVWTFIETAIMVASSDFGSELKRRRDKIVEMLYSSSDGRCRNCDF 60
Query: 2067 DRQTPNG---QITSSHE------GHKGASPSTPQSIH-RXXXXXXXXXXXXXXXGLFDDE 1918
D N SSHE G G+ +TP+SIH GL DDE
Sbjct: 61 DVGRINDGHEMKESSHEAKVGGGGGSGSPSTTPRSIHGEEEEEEEEDDELDPYGGLLDDE 120
Query: 1917 EVKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRK 1738
+ KIL IK+ +EDPDQSEDSL++LLQSLADMDITF+ALKETDIGRHVNRLRKHSSN+VRK
Sbjct: 121 QKKILEIKQSIEDPDQSEDSLIDLLQSLADMDITFRALKETDIGRHVNRLRKHSSNDVRK 180
Query: 1737 LVKHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPN 1558
LVK LVRKWK++VDEWV+LNP GE ASS L+ADGDSPQQ +P QNGHHQVPDF YSPN
Sbjct: 181 LVKQLVRKWKEIVDEWVRLNPQGEHASSALMADGDSPQQKIP---QNGHHQVPDFAYSPN 237
Query: 1557 PHNGSSGSDKNNSEPEPKPKVIPRREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLERLAS 1378
PHNGSSGSDKNNSEPE KPK +PR+EAP +P+ R + ++ D ERLAS
Sbjct: 238 PHNGSSGSDKNNSEPERKPKPVPRKEAPPRPIQQSASASHNAQRQREQQQSNFDSERLAS 297
Query: 1377 ARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGG-FQGRN 1234
ARKRL ENY+EA NAKKQRTIQVMDIHEIPKPKN FF KNKGG QGR+
Sbjct: 298 ARKRLQENYKEALNAKKQRTIQVMDIHEIPKPKNTFFSKNKGGASQGRH 346
>ref|XP_007048434.1| Transcription elongation factor (TFIIS) family protein, putative
isoform 1 [Theobroma cacao]
gi|590709002|ref|XP_007048435.1| Transcription elongation
factor (TFIIS) family protein, putative isoform 1
[Theobroma cacao] gi|508700695|gb|EOX92591.1|
Transcription elongation factor (TFIIS) family protein,
putative isoform 1 [Theobroma cacao]
gi|508700696|gb|EOX92592.1| Transcription elongation
factor (TFIIS) family protein, putative isoform 1
[Theobroma cacao]
Length = 336
Score = 421 bits (1081), Expect = e-114
Identities = 228/348 (65%), Positives = 262/348 (75%), Gaps = 10/348 (2%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYAT-VAPPCRNCD 2071
MDL+DFR VL + VD+WT IDTAI VASLDYG ELK RRDRIVERLYAT + CRNCD
Sbjct: 1 MDLDDFRSVLETAEVDVWTFIDTAILVASLDYGPELKQRRDRIVERLYATSMVTQCRNCD 60
Query: 2070 VDRQTPNGQIT------SSHEG-HKGASPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEV 1912
+ + ++ SSHE +G SP+ PQS + GLFDDE+
Sbjct: 61 FGERPSDYEVKADLKRESSHEDKRRGGSPNAPQSDN-------GDDELDPYGGLFDDEQK 113
Query: 1911 KILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLV 1732
KIL IKEHLE+P QSEDSL++LLQSLADMDITF+ALKETDIGRHVN LRKHSSN+VR+LV
Sbjct: 114 KILEIKEHLEEPHQSEDSLIDLLQSLADMDITFQALKETDIGRHVNILRKHSSNDVRRLV 173
Query: 1731 KHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPH 1552
K LVRKWK++VDEWV+LN PGEL SS L+ADGDSPQ+ P QNG+HQVPDF YSPNPH
Sbjct: 174 KQLVRKWKEIVDEWVRLNQPGELESSALMADGDSPQRKPP---QNGYHQVPDFAYSPNPH 230
Query: 1551 NGSSGSDKNNSEPEPKPKVI-PRREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLERLASA 1375
NGSSGSDKNNSEPE KPK I PR E P KP +S R ++++ D ERLASA
Sbjct: 231 NGSSGSDKNNSEPERKPKPIPPRNEPPPKPTYSA---PVLQNRQREQKESNFDSERLASA 287
Query: 1374 RKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGG-FQGRN 1234
RKRL ENY+EA+NAK+QRTIQVMDIHE+PKPKNAFFGKNKGG QGR+
Sbjct: 288 RKRLQENYKEAENAKRQRTIQVMDIHELPKPKNAFFGKNKGGSSQGRH 335
>ref|XP_012075304.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X1 [Jatropha curcas]
gi|643726633|gb|KDP35313.1| hypothetical protein
JCGZ_09472 [Jatropha curcas]
Length = 349
Score = 417 bits (1071), Expect = e-113
Identities = 223/351 (63%), Positives = 258/351 (73%), Gaps = 13/351 (3%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD++DFR +L +S VD+WT I+TAI VAS D+G ELK RRD+IVE LY++ CRNCD
Sbjct: 1 MDIDDFRSILESSGVDVWTFIETAIMVASSDFGSELKRRRDKIVEMLYSSSDGRCRNCDF 60
Query: 2067 DRQTPNG---QITSSHE------GHKGASPSTPQSIH-RXXXXXXXXXXXXXXXGLFDDE 1918
D N SSHE G G+ +TP+SIH GL DDE
Sbjct: 61 DVGRINDGHEMKESSHEAKVGGGGGSGSPSTTPRSIHGEEEEEEEEDDELDPYGGLLDDE 120
Query: 1917 EVKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRK 1738
+ KIL IK+ +EDPDQSEDSL++LLQSLADMDITF+ALKETDIGRHVNRLRKHSSN+VRK
Sbjct: 121 QKKILEIKQSIEDPDQSEDSLIDLLQSLADMDITFRALKETDIGRHVNRLRKHSSNDVRK 180
Query: 1737 LVKHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPN 1558
LVK LVRKWK++VDEWV+LNP GE ASS L+ADGDSPQQ +P QNGHHQVPDF YSPN
Sbjct: 181 LVKQLVRKWKEIVDEWVRLNPQGEHASSALMADGDSPQQKIP---QNGHHQVPDFAYSPN 237
Query: 1557 PHNGSSGSDKNNSEPEPKPKVIPRREAPVKPLH--SVXXXXXXXXXSRPLRDTSIDLERL 1384
PHNGSSGSDKNNSEPE KPK +PR+EAP +P+ + R + ++ D ERL
Sbjct: 238 PHNGSSGSDKNNSEPERKPKPVPRKEAPPRPIQQSASASHNAQLQRQREQQQSNFDSERL 297
Query: 1383 ASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGG-FQGRN 1234
ASARKRL ENY+EA NAKKQRTIQVMDIHEIPKPKN FF KNKGG QGR+
Sbjct: 298 ASARKRLQENYKEALNAKKQRTIQVMDIHEIPKPKNTFFSKNKGGASQGRH 348
>ref|XP_008440997.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Cucumis melo]
Length = 345
Score = 415 bits (1067), Expect = e-113
Identities = 220/350 (62%), Positives = 258/350 (73%), Gaps = 11/350 (3%)
Frame = -3
Query: 2250 KMDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPP--CRN 2077
++DL+DFR +L + VD+WT IDTA+ VASLDYG++LKNRRD IVERLYA +PP CRN
Sbjct: 3 RLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRN 62
Query: 2076 CDVDRQ---TPNGQITSSHEGH-KGASPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEVK 1909
CD DR NG G KGASPSTPQ + GLFDDE+ K
Sbjct: 63 CDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFV----VVEGDDDGADPYAGLFDDEQKK 118
Query: 1908 ILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVK 1729
+L IKE LE P Q ED+LVELLQ+LADMDITF+ALKETDIGRHVNRLRKHSSN+VR+LVK
Sbjct: 119 VLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVK 178
Query: 1728 HLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHN 1549
HLVRKWK++VDEWV+LN PGE ++ L+ADGDSPQQ P QNG+HQVPDF YSPNPHN
Sbjct: 179 HLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAP---QNGYHQVPDFAYSPNPHN 234
Query: 1548 GSSGSDKNNSEPEPKPKVIPRREAPVKPLHSVXXXXXXXXXSR--PLRDTSIDLERLASA 1375
G SGSD+NNSEPEPK K +PRR+AP KP + ++ + D ++LASA
Sbjct: 235 GGSGSDRNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASA 294
Query: 1374 RKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNK---GGFQGRN 1234
RKRL ENY+EA+NAK+QRTIQVMDIHEIPKPKNAFF KNK GG QGR+
Sbjct: 295 RKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRH 344
>ref|XP_002530078.1| conserved hypothetical protein [Ricinus communis]
gi|223530431|gb|EEF32318.1| conserved hypothetical
protein [Ricinus communis]
Length = 362
Score = 413 bits (1061), Expect = e-112
Identities = 223/369 (60%), Positives = 262/369 (71%), Gaps = 31/369 (8%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD++DFR +L +S VD+WT IDTAI VASLD+G+ELK RRD+IVE LY++ + CRNCD+
Sbjct: 1 MDVDDFRSILESSGVDVWTFIDTAIVVASLDFGNELKQRRDKIVEMLYSS-SGRCRNCDL 59
Query: 2067 DRQTPNGQITSSHE--------------GHKGASPSTPQSIHRXXXXXXXXXXXXXXXG- 1933
D G+I + HE G G+ +TP+SIH
Sbjct: 60 DV----GRINNGHEIKERSHLESKGGGGGGSGSPSTTPRSIHGDEDVDVVNDDDDDDDDD 115
Query: 1932 --------LFDDEEVKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHV 1777
LFDDE+ KIL IK+HLEDPDQSEDSLV+LLQSLADMDITFKALKETDIGRHV
Sbjct: 116 DGLDPYAGLFDDEQKKILEIKQHLEDPDQSEDSLVDLLQSLADMDITFKALKETDIGRHV 175
Query: 1776 NRLRKHSSNEVRKLVKHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQN 1597
N+LRKH+SN+VR+LVK LVRKWKD+VDEWVKLNPPG+ ASS L+ADGDSP+Q P QN
Sbjct: 176 NQLRKHTSNDVRRLVKQLVRKWKDIVDEWVKLNPPGQHASSGLMADGDSPRQKFP---QN 232
Query: 1596 GHHQVPDFGYSPNPHNGSSGSDKNNSEPEPKPKVIPRREAPVKPLH-----SVXXXXXXX 1432
GHHQVPDF YSPNPHNGSSGSDKNNSEPE +PK +PR+EAP +P S
Sbjct: 233 GHHQVPDFAYSPNPHNGSSGSDKNNSEPERRPKPVPRKEAPPRPAQQSVPVSASASHIVQ 292
Query: 1431 XXSRPLRDTSIDLERLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKP--KNAFFGKN 1258
R+ + D +RLASARKRL NY+EA+NAKKQRTIQVMDIHE+PKP KN FF KN
Sbjct: 293 RQREQQRENNFDSDRLASARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNKNTFFAKN 352
Query: 1257 K-GGFQGRN 1234
K GG QGR+
Sbjct: 353 KGGGSQGRH 361
>ref|XP_006427873.1| hypothetical protein CICLE_v10025964mg [Citrus clementina]
gi|568820070|ref|XP_006464554.1| PREDICTED: probable
mediator of RNA polymerase II transcription subunit
26c-like [Citrus sinensis] gi|557529863|gb|ESR41113.1|
hypothetical protein CICLE_v10025964mg [Citrus
clementina]
Length = 353
Score = 407 bits (1047), Expect = e-110
Identities = 226/357 (63%), Positives = 260/357 (72%), Gaps = 19/357 (5%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYAT-VAPPCRNCD 2071
MDLEDFR +L + VD+WT IDTAI VASLDY ELK RRD+IVERLYAT +A CRNCD
Sbjct: 1 MDLEDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
Query: 2070 -------VDRQTPNGQITSSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXG--LFDDE 1918
V+++ GQ + ASPSTP S++ LFDDE
Sbjct: 61 FGNGVVDVNKEISRGQHDEVKAAQQ-ASPSTPHSVNGDDDIDIENDNDIIDPYGGLFDDE 119
Query: 1917 EVKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRK 1738
+ +IL IKEHLEDPDQSEDSL++LLQSLADMDITFKALKETDIGRHVN+LRKHSSN+VRK
Sbjct: 120 QKRILEIKEHLEDPDQSEDSLIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
Query: 1737 LVKHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPN 1558
LVKHLVRKWKD+VDEWVKLN PGELASS ++ DGDSPQQ +P QNG+HQVPDF YSPN
Sbjct: 180 LVKHLVRKWKDIVDEWVKLNQPGELASSAMM-DGDSPQQKIP---QNGNHQVPDFAYSPN 235
Query: 1557 PHNGSSGSDKNNSEPEPKPK--VIPRREA-----PVKPLHSVXXXXXXXXXSRPLRDTSI 1399
PHNGSSGSDKNNSEPE K K +PR+EA P + + R+++
Sbjct: 236 PHNGSSGSDKNNSEPERKSKQAPLPRKEALSSRPPQSASPAAPHSVQRPREQKESRESTF 295
Query: 1398 DLE-RLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGG-FQGRN 1234
D + RLASARKRL ENY+ +NAK+QRTIQVMDIHEIPKPKNAFFGKNKGG QGR+
Sbjct: 296 DADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKPKNAFFGKNKGGSSQGRH 352
>ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Cucumis sativus] gi|700193190|gb|KGN48394.1|
hypothetical protein Csa_6G486670 [Cucumis sativus]
Length = 345
Score = 407 bits (1045), Expect = e-110
Identities = 217/350 (62%), Positives = 255/350 (72%), Gaps = 11/350 (3%)
Frame = -3
Query: 2250 KMDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPP--CRN 2077
++DL+DFR +L + VD+WT IDTA+ VASLDYG++LKNRRD IVERLYA +PP CRN
Sbjct: 3 RLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRN 62
Query: 2076 CDVDRQ---TPNGQITSSHEGH-KGASPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEVK 1909
CD DR NG G K ASPSTPQ + GLFDDE+ K
Sbjct: 63 CDTDRNHDGRSNGCEIKQGSGEVKEASPSTPQFV----VVEGDDDGADPYAGLFDDEQKK 118
Query: 1908 ILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVK 1729
+L IKE LE P Q ED+LVELLQ+LADMDITF+ALKETDIGRHVNRLRKH SN+VR+LVK
Sbjct: 119 VLEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVK 178
Query: 1728 HLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHN 1549
HLVRKWK++VDEWV+LN PGE ++ L+ADGDSPQQ P QNG+HQVPDF YSPNPHN
Sbjct: 179 HLVRKWKEIVDEWVRLNQPGE-QTATLLADGDSPQQKAP---QNGYHQVPDFAYSPNPHN 234
Query: 1548 GSSGSDKNNSEPEPKPKVIPRREAPVKPLHSVXXXXXXXXXSR--PLRDTSIDLERLASA 1375
G SGSD+NNSEPEPK K +PRR+A KP + ++ + D ++LASA
Sbjct: 235 GGSGSDRNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASA 294
Query: 1374 RKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNK---GGFQGRN 1234
RKRL ENY+EA+NAK+QRTIQVMDIHEIPKPKNAFF KNK GG QGR+
Sbjct: 295 RKRLQENYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNKGSGGGSQGRH 344
>ref|XP_002265433.2| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Vitis vinifera]
gi|731430702|ref|XP_010665135.1| PREDICTED: probable
mediator of RNA polymerase II transcription subunit 26c
[Vitis vinifera] gi|296081186|emb|CBI18212.3| unnamed
protein product [Vitis vinifera]
Length = 332
Score = 406 bits (1043), Expect = e-110
Identities = 212/343 (61%), Positives = 247/343 (72%), Gaps = 5/343 (1%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD ++FR +L +S VD+WTLI+TA++VAS+DY E K RRD IVERLY V C NCD
Sbjct: 1 MDCDEFRSILESSGVDVWTLIETAVSVASVDYSEEFKGRRDSIVERLYTPVVSRCLNCDR 60
Query: 2067 DR-QTPNGQITSSHEGHKGASPS---TPQSIHRXXXXXXXXXXXXXXXGLFDDEEVKILR 1900
DR PNG + + + S TP+S+ R D+E+ KIL
Sbjct: 61 DRIHKPNGDRSVKEKMDQLQDESWIETPESVERDRDGS------------IDEEQSKILA 108
Query: 1899 IKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVKHLV 1720
IKE LEDPDQ EDSLV+LLQSLADMDITFKALKETDIGRHVNRLRKH SNEVR+LVK LV
Sbjct: 109 IKERLEDPDQLEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPSNEVRRLVKQLV 168
Query: 1719 RKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHNGSS 1540
RKWKDLVDEWVKL+ PGE +S ++ADGDSPQQN ++ N HHQVPDF YSPNPHNGSS
Sbjct: 169 RKWKDLVDEWVKLSTPGETTASAIVADGDSPQQNHLKSTSNVHHQVPDFAYSPNPHNGSS 228
Query: 1539 GSDKNNSEPEPKPKVIPRREAPVKPLHS-VXXXXXXXXXSRPLRDTSIDLERLASARKRL 1363
GSDKNN E EPK K +PRRE P KP + R +D+ +D E+LASAR+RL
Sbjct: 229 GSDKNNVELEPKRKAVPRRETPNKPNQTPPIPTSVALNKQREQKDSLVDEEKLASARRRL 288
Query: 1362 HENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGGFQGRN 1234
HENYQEAQNAKKQRTIQVMDIH+IPKPKN FF KN+GG Q ++
Sbjct: 289 HENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKNRGGVQAKH 331
>gb|KDO53372.1| hypothetical protein CISIN_1g018587mg [Citrus sinensis]
Length = 353
Score = 405 bits (1041), Expect = e-110
Identities = 224/357 (62%), Positives = 260/357 (72%), Gaps = 19/357 (5%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYAT-VAPPCRNCD 2071
MDL+DFR +L + VD+WT IDTAI VASLDY ELK RRD+IVERLYAT +A CRNCD
Sbjct: 1 MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
Query: 2070 -------VDRQTPNGQITSSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXG--LFDDE 1918
V+++ GQ + ASPSTP S++ LFDDE
Sbjct: 61 FGNGVVDVNKEISRGQHDEVKAAQQ-ASPSTPHSVNGDDDIDIENDNDIIDPYGGLFDDE 119
Query: 1917 EVKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRK 1738
+ +IL IKEHLEDPDQSED+L++LLQSLADMDITFKALKETDIGRHVN+LRKHSSN+VRK
Sbjct: 120 QKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
Query: 1737 LVKHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPN 1558
LVKHLVRKWKD+VDEWVKLN PGELASS ++ DGDSPQQ +P QNG+HQVPDF YSPN
Sbjct: 180 LVKHLVRKWKDIVDEWVKLNQPGELASSAMM-DGDSPQQKIP---QNGNHQVPDFAYSPN 235
Query: 1557 PHNGSSGSDKNNSEPEPKPK--VIPRREA-----PVKPLHSVXXXXXXXXXSRPLRDTSI 1399
PHNGSSGSDKNNSEPE K K +PR+EA P + + R+++
Sbjct: 236 PHNGSSGSDKNNSEPERKSKQAPLPRKEALSSRPPQSASPAAPHSVQRPREQKESRESTF 295
Query: 1398 DLE-RLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGG-FQGRN 1234
D + RLASARKRL ENY+ +NAK+QRTIQVMDIHEIPKPKNAFFGKNKGG QGR+
Sbjct: 296 DADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKPKNAFFGKNKGGSSQGRH 352
>ref|XP_010649433.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X1 [Vitis vinifera]
gi|296088637|emb|CBI37628.3| unnamed protein product
[Vitis vinifera]
Length = 332
Score = 402 bits (1033), Expect = e-109
Identities = 211/344 (61%), Positives = 251/344 (72%), Gaps = 6/344 (1%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD ++FR++L NS VD+W I+TAI+VA DYG EL++RRD IVER+Y ++ C +C++
Sbjct: 1 MDRDEFRLILRNSGVDVWEFINTAISVAYSDYGDELRHRRDGIVERMY--MSSRCGSCNL 58
Query: 2067 DRQTP------NGQITSSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEVKI 1906
Q + + + K SP TPQSI+R L D+EE +I
Sbjct: 59 RYQHSGLDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDRYGG-------LLDEEEARI 111
Query: 1905 LRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVKH 1726
L IKEHLE PDQ +DS+V+LLQ+LADMDITFKALKETDIGRHVNRLRKH SN+VR+LVKH
Sbjct: 112 LDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKH 171
Query: 1725 LVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHNG 1546
LVRKWKDLVDEWVK NP GE SS L+A+GDSP Q +PRT GHHQVPDFGYSPNP NG
Sbjct: 172 LVRKWKDLVDEWVKSNPAGEFTSSALMAEGDSPPQKIPRT---GHHQVPDFGYSPNPQNG 228
Query: 1545 SSGSDKNNSEPEPKPKVIPRREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLERLASARKR 1366
SSGSDKNN+EPEPK K IPR+E P +P S ++ RDT+ID ++ ASARKR
Sbjct: 229 SSGSDKNNAEPEPKVKAIPRKEVPTRPAQSAPVSSSFPPPNKQ-RDTAIDPDKFASARKR 287
Query: 1365 LHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGGFQGRN 1234
LHENYQEAQNAKKQRTIQVMDIH+IPKPKN FF K K G QGR+
Sbjct: 288 LHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKPKVGSQGRH 331
>ref|XP_009613975.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Nicotiana tomentosiformis]
Length = 352
Score = 401 bits (1031), Expect = e-108
Identities = 220/358 (61%), Positives = 259/358 (72%), Gaps = 18/358 (5%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MDL++FR++LS S+VD+WTLID AI+VAS+D G ELK+RRD IVE+LY+T CR+C+
Sbjct: 1 MDLDEFRLILSESKVDVWTLIDAAISVASVDCGDELKHRRDGIVEKLYST---RCRSCN- 56
Query: 2067 DRQTPNGQ--------ITSSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXG------L 1930
NGQ +T + E SP TP+S HR L
Sbjct: 57 --DVVNGQYSLDNGERVTRNVETVMNKSPLTPESNHRNNNTSNDNKNDDEEEDVDPYGGL 114
Query: 1929 FDDEE-VKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSS 1753
FDD+E +IL IKE LEDP S++ +++LLQSLADMDITF+ALKETDIGRHVNRLRKH S
Sbjct: 115 FDDDEQTRILTIKEQLEDPQLSDEDVIDLLQSLADMDITFQALKETDIGRHVNRLRKHPS 174
Query: 1752 NEVRKLVKHLVRKWKDLVDEWVKLNPPGELASSNLI-ADGDSPQQNVPRTVQNGHHQVPD 1576
NEVR+LVK LVRKWK+ VD+WV+LN P + SSNLI ADGDSPQQNVP+ NGHHQVPD
Sbjct: 175 NEVRRLVKMLVRKWKETVDDWVRLNQPEQHGSSNLIAADGDSPQQNVPKNQLNGHHQVPD 234
Query: 1575 FGYSPNPHNGSSGSDKNNSEPEPKPK-VIPRREAPVKPLHSVXXXXXXXXXSR-PLRDTS 1402
F YSPNP NGSS SD+NNSE E KPK V+PR P +PL S SR P R+++
Sbjct: 235 FTYSPNPRNGSSSSDRNNSESEYKPKPVLPRNVTPTRPLQSAPKPTSAPPPSRPPPRESA 294
Query: 1401 IDLERLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGGFQGRNHR 1228
IDLE+L SAR+RL ENYQEAQNAKKQRTIQVMDIHEIPKPKN FF KNKGGFQGR+HR
Sbjct: 295 IDLEKLNSARRRLQENYQEAQNAKKQRTIQVMDIHEIPKPKNGFFAKNKGGFQGRHHR 352
>ref|XP_009786138.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Nicotiana sylvestris]
Length = 352
Score = 397 bits (1021), Expect = e-107
Identities = 220/355 (61%), Positives = 260/355 (73%), Gaps = 15/355 (4%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCD- 2071
MDL++FR+VLS S+VD+WT+ID AI+VAS+D G ELK+RRD IVE+LY+T CR+C+
Sbjct: 1 MDLDEFRLVLSESKVDVWTMIDAAISVASVDCGDELKHRRDGIVEKLYST---RCRSCND 57
Query: 2070 -VDRQ--TPNGQ-ITSSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXG------LFDD 1921
V+ Q NGQ +T + E SP TP+S HR LFDD
Sbjct: 58 VVNGQYSLDNGQTVTRNVETVMNKSPITPESNHRNNNTSNDNKNDDEEEDVDPYGGLFDD 117
Query: 1920 EE-VKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEV 1744
+E +IL IKE LEDP S++ +++LLQSLADMDITF+ALKETDIGRHVNRLRKH SNEV
Sbjct: 118 DEQTRILTIKEQLEDPQLSDEDVIDLLQSLADMDITFQALKETDIGRHVNRLRKHPSNEV 177
Query: 1743 RKLVKHLVRKWKDLVDEWVKLNPPGELASSNLI-ADGDSPQQNVPRTVQNGHHQVPDFGY 1567
R+LVK LVRKWK+ VD+WV+LN P + SSNLI ADGDSPQQNV + NGHHQVPDF Y
Sbjct: 178 RRLVKMLVRKWKETVDDWVRLNQPEQHGSSNLIAADGDSPQQNVQKNQLNGHHQVPDFTY 237
Query: 1566 SPNPHNGSSGSDKNNSEPEPKPKVIP-RREAPVKPLHSVXXXXXXXXXSR-PLRDTSIDL 1393
SPNP NGSS SD+NNSE E KPK +P R P +PL S SR P R+++IDL
Sbjct: 238 SPNPRNGSSSSDRNNSESEHKPKPVPLRNVTPTRPLQSAPKPTSAPPPSRPPPRESAIDL 297
Query: 1392 ERLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGGFQGRNHR 1228
E+L SAR+RL ENYQEAQNAKKQRTIQVMDIHEIPKPKN FF KNKGGFQGR+HR
Sbjct: 298 EKLNSARRRLQENYQEAQNAKKQRTIQVMDIHEIPKPKNGFFAKNKGGFQGRHHR 352
>ref|XP_002279496.2| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X2 [Vitis vinifera]
Length = 331
Score = 396 bits (1017), Expect = e-107
Identities = 210/344 (61%), Positives = 250/344 (72%), Gaps = 6/344 (1%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD ++FR++L NS VD+W I+TAI+VA DYG EL++RRD IVER+Y ++ C +C++
Sbjct: 1 MDRDEFRLILRNSGVDVWEFINTAISVAYSDYGDELRHRRDGIVERMY--MSSRCGSCNL 58
Query: 2067 DRQTP------NGQITSSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEVKI 1906
Q + + + K SP TPQSI+R L D+EE +I
Sbjct: 59 RYQHSGLDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDRYGG-------LLDEEEARI 111
Query: 1905 LRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVKH 1726
L IKEHLE PDQ +DS+V+LLQ+LADMDITFKALKETDIGRHVNRLRKH SN+VR+LVKH
Sbjct: 112 LDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKH 171
Query: 1725 LVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHNG 1546
LVRKWKDLVDEWVK NP GE SS L+ +GDSP Q +PRT GHHQVPDFGYSPNP NG
Sbjct: 172 LVRKWKDLVDEWVKSNPAGEFTSSALM-EGDSPPQKIPRT---GHHQVPDFGYSPNPQNG 227
Query: 1545 SSGSDKNNSEPEPKPKVIPRREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLERLASARKR 1366
SSGSDKNN+EPEPK K IPR+E P +P S ++ RDT+ID ++ ASARKR
Sbjct: 228 SSGSDKNNAEPEPKVKAIPRKEVPTRPAQSAPVSSSFPPPNKQ-RDTAIDPDKFASARKR 286
Query: 1365 LHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNKGGFQGRN 1234
LHENYQEAQNAKKQRTIQVMDIH+IPKPKN FF K K G QGR+
Sbjct: 287 LHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKPKVGSQGRH 330
>ref|XP_011100935.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Sesamum indicum]
Length = 373
Score = 395 bits (1016), Expect = e-107
Identities = 217/378 (57%), Positives = 253/378 (66%), Gaps = 38/378 (10%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD E+FR +LS S V +W +I+ AI VAS DYG EL+ RRD+IVE LYA A CR+C+
Sbjct: 1 MDPEEFRAILSRSGVGIWAMIEAAIRVASSDYGEELRRRRDKIVESLYAPAAQLCRSCNG 60
Query: 2067 D-----------------------------------RQTPNGQITSSHEGHKGASPSTPQ 1993
D N + S+ + K SPSTP+
Sbjct: 61 DVHQNVAQDEQYYPQNISTVYNNSDDIDNNISKKYNNDDDNNNMNSNEDFSK--SPSTPE 118
Query: 1992 SIHRXXXXXXXXXXXXXXXGLFDDEEVKILRIKEHLEDPDQSEDSLVELLQSLADMDITF 1813
S HR GLFDDE+ KI+ IKE LEDP+QSED++VELLQ+LADMDITF
Sbjct: 119 SNHRDFSGGEAEEDLDPYGGLFDDEQTKIVTIKEQLEDPNQSEDAVVELLQNLADMDITF 178
Query: 1812 KALKETDIGRHVNRLRKHSSNEVRKLVKHLVRKWKDLVDEWVKLNPPGELASSNLIADGD 1633
+ALKETDIGRHVNRLRKH SNEVR+LVK LVRKWK+ VDEWVK+N P +SNLIADGD
Sbjct: 179 QALKETDIGRHVNRLRKHPSNEVRRLVKQLVRKWKETVDEWVKVNQP--QGTSNLIADGD 236
Query: 1632 SPQQNVPRTVQNGHHQVPDFGYSPNPHNGSSGSDKNNSEPEPKPK---VIPRREAPVKPL 1462
SPQQ++P+ +NGHHQVPDFGYSPNP NG S ++N +E E KP+ PRREAP KP
Sbjct: 237 SPQQSIPKNQENGHHQVPDFGYSPNPQNGRSSVERNYAEHETKPRQPQFAPRREAPSKPP 296
Query: 1461 HSVXXXXXXXXXSRPLRDTSIDLERLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKP 1282
SV +R R+ ID ERL SAR+RL ENYQEAQNAKKQRTIQVMDIHEIPKP
Sbjct: 297 QSV-PKSASAPPNRAQREPVIDDERLNSARRRLQENYQEAQNAKKQRTIQVMDIHEIPKP 355
Query: 1281 KNAFFGKNKGGFQGRNHR 1228
KNAFF KNKGGFQGR+HR
Sbjct: 356 KNAFFAKNKGGFQGRHHR 373
>ref|XP_007011109.1| Transcription elongation factor (TFIIS) family protein, putative
isoform 1 [Theobroma cacao] gi|508728022|gb|EOY19919.1|
Transcription elongation factor (TFIIS) family protein,
putative isoform 1 [Theobroma cacao]
Length = 337
Score = 395 bits (1014), Expect = e-106
Identities = 216/349 (61%), Positives = 256/349 (73%), Gaps = 11/349 (3%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYAT-VAPPCRNCD 2071
MDL+DFR VL + VD+WT ID+AI VASLDYG ELK RRD IVERLYAT + C++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIVERLYATSMVTRCKSCD 60
Query: 2070 VDRQTPNGQIT---SSHEGHKGA----SPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEV 1912
++ Q+ S +EG G SP TPQS + LFDDE+
Sbjct: 61 FGERSNGYQVNKEGSPNEGKGGEGGRESPFTPQSDNEDGDLDPYGG-------LFDDEQK 113
Query: 1911 KILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLV 1732
++L IKE LE+PDQSEDSLV+LLQSLADMDITF+ALKETDIGRHVN+LRKHSSN+VR+LV
Sbjct: 114 RVLEIKESLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLV 173
Query: 1731 KHLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPH 1552
K LVRKWK++VDEWV++N PGEL S+ L+ DGDSPQQ +P QNG QVPDF YSPNPH
Sbjct: 174 KQLVRKWKEIVDEWVRVNQPGELESAALM-DGDSPQQKLP---QNGRQQVPDFAYSPNPH 229
Query: 1551 NGSSGSDKNNSEPEPKPKVI--PRREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLERLAS 1378
NGS G +KNNSEPE KPK I PR++ P +P HS R ++++ D ERLAS
Sbjct: 230 NGSFGLEKNNSEPERKPKPIPPPRKDPPPRPTHST--PPQNVQRQREQKESNFDSERLAS 287
Query: 1377 ARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNK-GGFQGRN 1234
ARKRL NY+EA+NAKKQRTIQVMDIHE+PKPKNAFFGKNK GG QGR+
Sbjct: 288 ARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNAFFGKNKGGGSQGRH 336
>ref|XP_012451443.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Gossypium raimondii]
gi|763800943|gb|KJB67898.1| hypothetical protein
B456_010G216800 [Gossypium raimondii]
Length = 335
Score = 394 bits (1013), Expect = e-106
Identities = 212/347 (61%), Positives = 252/347 (72%), Gaps = 9/347 (2%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYAT-VAPPCRNCD 2071
MDL+DFR VL + VD+WT IDTAI VASLDYG ELK RRD IVERLYAT + C++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQELKQRRDGIVERLYATSMVTKCKSCD 60
Query: 2070 VDRQTPNGQITSSHEGHKGA------SPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEVK 1909
+ Q+ + H+G SP +PQS + LFDDE+ +
Sbjct: 61 FGEGSNGYQLNNESNPHEGGEEGVTGSPFSPQSDNENDDFDPYGG-------LFDDEQKR 113
Query: 1908 ILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVK 1729
+L IKE LE PDQSED+LV+LLQSLADMDITF+ALKETDIGRHVN+LRKHSSN+VR+LVK
Sbjct: 114 VLEIKERLELPDQSEDTLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVK 173
Query: 1728 HLVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHN 1549
HLVRKWKD+VDEWV++N PGE + L+ DGDSPQQ P QNG QVPDF YSPNPHN
Sbjct: 174 HLVRKWKDIVDEWVRVNQPGEHEPAALM-DGDSPQQKPP---QNGRQQVPDFAYSPNPHN 229
Query: 1548 GSSGSDKNNSEPEPKPKVI-PRREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLERLASAR 1372
G SGS+KNNSEPE KPK I PR++ P +P H R ++T+ D ERLASAR
Sbjct: 230 GGSGSEKNNSEPERKPKPIPPRKDPPSRPTH--LTPPQNVQRQREQKETNFDAERLASAR 287
Query: 1371 KRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNK-GGFQGRN 1234
KRL E+Y+EA+NAKKQRT+QVMDIHE+PKPKNAFFG+NK GG QGR+
Sbjct: 288 KRLQESYKEAENAKKQRTVQVMDIHELPKPKNAFFGRNKGGGSQGRH 334
>ref|XP_012458765.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X2 [Gossypium raimondii]
gi|763808077|gb|KJB74979.1| hypothetical protein
B456_012G017100 [Gossypium raimondii]
Length = 336
Score = 394 bits (1011), Expect = e-106
Identities = 213/347 (61%), Positives = 253/347 (72%), Gaps = 9/347 (2%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYAT-VAPPCRNCD 2071
MDL+DFR VL + VD+WT IDTAI VASLDYG E K RRD IVERLYAT + C++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQEFKQRRDGIVERLYATSMVTRCKSCD 60
Query: 2070 VDRQTPNGQIT---SSHEGHKGA--SPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEVKI 1906
++ Q+ S HEG +G SP TP S + LFDDE+ ++
Sbjct: 61 FGERSNVYQVNKEDSPHEGKEGGKGSPFTPHSDNEDDDMDPYGG-------LFDDEQKRV 113
Query: 1905 LRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVKH 1726
L IKE LE PDQSEDSLV+LLQSLADMDITF+ALKETDIGRHVN+LRKHSSN+VR+LVK
Sbjct: 114 LEIKERLELPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVKQ 173
Query: 1725 LVRKWKDLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHNG 1546
LVRKWK++VDEWV++N PGE + L+ADGDSPQQ +P QNG QVPDF YSPNPHNG
Sbjct: 174 LVRKWKEIVDEWVRVNQPGEPEPAGLMADGDSPQQKLP---QNGRQQVPDFAYSPNPHNG 230
Query: 1545 SSGSDKNNSEPEPKPKVIP--RREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLERLASAR 1372
S GS+KNNSEPE KPK IP R++ P + HS R ++++ D ERLASAR
Sbjct: 231 SFGSEKNNSEPERKPKPIPPCRKDPPSRHTHST--PPQNVQRQREQKESNFDSERLASAR 288
Query: 1371 KRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNK-GGFQGRN 1234
KRL E+Y+EA+NAKKQRT+QVMDIHE+PKPKNAFF KNK GG QGR+
Sbjct: 289 KRLQESYKEAENAKKQRTVQVMDIHELPKPKNAFFAKNKGGGSQGRH 335
>ref|XP_010027719.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X2 [Eucalyptus grandis]
gi|629088043|gb|KCW54296.1| hypothetical protein
EUGRSUZ_I00261 [Eucalyptus grandis]
Length = 342
Score = 390 bits (1002), Expect = e-105
Identities = 217/352 (61%), Positives = 250/352 (71%), Gaps = 14/352 (3%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYA-TVAPPCRNCD 2071
MDL+DFR VL +S VD+WT IDTAITVASLD ELK RRD IVERLYA T++ C +C
Sbjct: 1 MDLDDFRTVLESSGVDVWTFIDTAITVASLDNFDELKRRRDGIVERLYAATLSAKCGSCQ 60
Query: 2070 VDR--QTPNGQIT---------SSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXGLFD 1924
D PNG I EG K SPSTPQS LFD
Sbjct: 61 TDGLVDRPNGHIVRGPVQEEKAKGREG-KANSPSTPQSTDMNDELDPFGG-------LFD 112
Query: 1923 DEEVKILRIKEHLEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEV 1744
DE+ +IL IK HLEDPDQS DSLVELLQSLADMDITF+AL+ETDIGRHVN+ RKH SN+V
Sbjct: 113 DEQKRILEIKRHLEDPDQSADSLVELLQSLADMDITFQALEETDIGRHVNQFRKHPSNDV 172
Query: 1743 RKLVKHLVRKWKDLVDEWVKLNPPGELASSNLI-ADGDSPQQNVPRTVQNGHHQVPDFGY 1567
R+LVKHLVRKWK +VDEWV +N PGE+ASS L+ ADGDSPQQ VP QNG+ +VP+FG+
Sbjct: 173 RRLVKHLVRKWKAIVDEWVTVNQPGEVASSALLGADGDSPQQKVP---QNGYSKVPEFGH 229
Query: 1566 SPNPHNGSSGSDKNNSEPEPKPKVIPRREAPVKPLHSVXXXXXXXXXSRPLRDTSIDLER 1387
SPNP NGSSGS++N SEPE K K++ R+E P KP V R +++ D R
Sbjct: 230 SPNPQNGSSGSERNYSEPEAKAKMVVRKETPSKPHPRVSASASAQNRLREQKESGFDAAR 289
Query: 1386 LASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNAFFGKNK-GGFQGRN 1234
LASARKRL NY+EA+NAKKQRTIQVMDIHEIPKPKNAFFGKNK GG QG++
Sbjct: 290 LASARKRLQANYKEAENAKKQRTIQVMDIHEIPKPKNAFFGKNKAGGSQGKH 341
>ref|XP_010088726.1| hypothetical protein L484_016512 [Morus notabilis]
gi|587846421|gb|EXB36907.1| hypothetical protein
L484_016512 [Morus notabilis]
Length = 418
Score = 390 bits (1001), Expect = e-105
Identities = 217/342 (63%), Positives = 245/342 (71%), Gaps = 6/342 (1%)
Frame = -3
Query: 2247 MDLEDFRVVLSNSRVDLWTLIDTAITVASLDYGHELKNRRDRIVERLYATVAPPCRNCDV 2068
MD +DFR +L +S VD+WT IDTAI VAS+DYG EL+ RRD IVERLYA + + D
Sbjct: 1 MDYDDFRAILDSSGVDVWTFIDTAIAVASMDYGGELRQRRDGIVERLYAASSSSSAS-DH 59
Query: 2067 DRQTPNGQITSSHEGHKGASPSTPQSIHRXXXXXXXXXXXXXXXGLFDDEEVKILRIKEH 1888
R + + + SP TPQSI R LFDDE+ KIL IKE
Sbjct: 60 HRPRHYDREAKTAGEKERVSPPTPQSIDRENSDNDGEGLDPYGG-LFDDEQKKILEIKEQ 118
Query: 1887 LEDPDQSEDSLVELLQSLADMDITFKALKETDIGRHVNRLRKHSSNEVRKLVKHLVRKWK 1708
LED DQSED+LVELLQSLADMDITF+ALKETDIGRHVNRLRKH S+EV++LVK +VRKWK
Sbjct: 119 LEDSDQSEDTLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSSEVKRLVKQVVRKWK 178
Query: 1707 DLVDEWVKLNPPGELASSNLIADGDSPQQNVPRTVQNGHHQVPDFGYSPNPHNGSSGSDK 1528
D VDEWVKLN PGE AS++L+ DGDSPQQ +P QNGHHQVPDF YSPNPHNGSSGSDK
Sbjct: 179 DTVDEWVKLNQPGEHASNSLM-DGDSPQQKIP---QNGHHQVPDFAYSPNPHNGSSGSDK 234
Query: 1527 NNSEPEPKPKVIP-RREA---PVKPLHSVXXXXXXXXXSRPLRDTSIDLERLASARKRLH 1360
NNSEPE KPK +P RREA P+ P R R+ S D E+LASARKRL
Sbjct: 235 NNSEPEQKPKAVPSRREALPKPMNPSVPQSAHSTPQNRQREQREGSFDAEKLASARKRLQ 294
Query: 1359 ENYQEAQNAKKQRTIQVMDIHEIPKP--KNAFFGKNKGGFQG 1240
ENY+EA+NAKKQRTIQVMDIHEIPKP KNAFF KNKGG G
Sbjct: 295 ENYKEAENAKKQRTIQVMDIHEIPKPKAKNAFFPKNKGGGGG 336