BLASTX nr result
ID: Cornus23_contig00014795
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00014795
(391 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN59811.1| hypothetical protein VITISV_006540 [Vitis vinifera] 46 1e-09
ref|XP_012836332.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r... 67 5e-09
ref|XP_010026918.1| PREDICTED: uncharacterized protein LOC104417... 52 7e-09
gb|KOM57411.1| hypothetical protein LR48_Vigan11g044400 [Vigna a... 65 3e-08
gb|KOM46784.1| hypothetical protein LR48_Vigan07g048800 [Vigna a... 65 3e-08
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 43 2e-06
gb|AAX95987.1| retrotransposon protein, putative, unclassified [... 44 2e-06
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 43 4e-06
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 43 6e-06
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 43 7e-06
>emb|CAN59811.1| hypothetical protein VITISV_006540 [Vitis vinifera]
Length = 1061
Score = 46.2 bits (108), Expect(2) = 1e-09
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -2
Query: 390 HISDHARGKLDPKSLKCTFIGYGGDEFGYRLWND 289
HI +AR KLD KS C FIGYG ++FGY W++
Sbjct: 327 HIDSNARSKLDAKSKICFFIGYGDEKFGYWFWDE 360
Score = 43.1 bits (100), Expect(2) = 1e-09
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = -1
Query: 286 WDGQNNKIIRSRDVIFNEKVMYKDRG--IAHPTSQVQENPEYFKLDD 152
WD QN KII R+VIFNE+VMYK + ++ T Q+ E+ LD+
Sbjct: 358 WDEQNRKIITCRNVIFNEQVMYKVKSTVVSDVTEIDQKKSEFVNLDE 404
>ref|XP_012836332.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein
from transposon TNT 1-94 [Erythranthe guttatus]
Length = 755
Score = 67.0 bits (162), Expect = 5e-09
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -2
Query: 390 HISDHARGKLDPKSLKCTFIGYGGDEFGYRLWNDSGMAKIIRS 262
HISD R KLDPKS KCTF+GYG D+FGYR+W+D KIIRS
Sbjct: 527 HISDQGRNKLDPKSKKCTFVGYGEDQFGYRIWDDES-KKIIRS 568
Score = 52.8 bits (125), Expect(2) = 7e-07
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = -1
Query: 289 LWDGQNNKIIRSRDVIFNEKVMYKDRGIAHPTSQVQENPEYFKLDDDPV 143
+WD ++ KIIRSRDVIFNE +MYKDR H T + P + ++DD V
Sbjct: 557 IWDDESKKIIRSRDVIFNEAIMYKDR---HLTITSESEPVFAEIDDTQV 602
Score = 26.9 bits (58), Expect(2) = 7e-07
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 62 TPTPRRSARLYIPNQRYVNF 3
TP RRS R +PNQRY+++
Sbjct: 624 TPALRRSFRPPVPNQRYLDY 643
>ref|XP_010026918.1| PREDICTED: uncharacterized protein LOC104417318 [Eucalyptus
grandis]
Length = 126
Score = 51.6 bits (122), Expect(2) = 7e-09
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 366 KLDPKSLKCTFIGYGGDEFGYRLWN 292
KLD KS KC FIGYGGDE+GYRLWN
Sbjct: 69 KLDAKSKKCIFIGYGGDEYGYRLWN 93
Score = 35.0 bits (79), Expect(2) = 7e-09
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -1
Query: 289 LWDGQNNKIIRSRDVIFNEKVMYKDRGIAH 200
LW+ +K+I +R+VIF+E+ +YKDR H
Sbjct: 91 LWNYATDKVIHNRNVIFHEEKIYKDRQTKH 120
>gb|KOM57411.1| hypothetical protein LR48_Vigan11g044400 [Vigna angularis]
Length = 179
Score = 64.7 bits (156), Expect = 3e-08
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -2
Query: 390 HISDHARGKLDPKSLKCTFIGYGGDEFGYRLWNDSGMAKIIRS 262
HISD R KLDPKS KCTF+GYG DEFGYR+W+D K+ RS
Sbjct: 124 HISDQVRNKLDPKSKKCTFLGYGEDEFGYRIWDDEN-KKMTRS 165
>gb|KOM46784.1| hypothetical protein LR48_Vigan07g048800 [Vigna angularis]
Length = 126
Score = 64.7 bits (156), Expect = 3e-08
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -2
Query: 390 HISDHARGKLDPKSLKCTFIGYGGDEFGYRLWNDSGMAKIIRS 262
HISD R KLDPKS KCTF+GYG DEFGYR+W+D K+ RS
Sbjct: 71 HISDQVRNKLDPKSKKCTFLGYGEDEFGYRIWDDEN-KKMTRS 112
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 42.7 bits (99), Expect(2) = 2e-06
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2
Query: 369 GKLDPKSLKCTFIGYGGDEFGYRLWN 292
GKL+P+++KC F+GYG GY+LWN
Sbjct: 594 GKLEPRAIKCLFLGYGSGVKGYKLWN 619
Score = 35.4 bits (80), Expect(2) = 2e-06
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -1
Query: 289 LWDGQNNKIIRSRDVIFNEKVMYKDRGIAHPTSQVQENPEYFKLDDDPV 143
LW+ + NK SR V+FNE VM+ D + PT +P + D+P+
Sbjct: 617 LWNPETNKTFMSRSVVFNESVMFND---SLPT---DHSPPVLQPQDEPI 659
>gb|AAX95987.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|77549590|gb|ABA92387.1|
retrotransposon protein, putative, unclassified [Oryza
sativa Japonica Group]
Length = 671
Score = 44.3 bits (103), Expect(2) = 2e-06
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -2
Query: 369 GKLDPKSLKCTFIGYGGDEFGYRLWN 292
GKLDP+++KC F+GYG GY+LWN
Sbjct: 276 GKLDPRAIKCLFLGYGSGVKGYKLWN 301
Score = 33.9 bits (76), Expect(2) = 2e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 289 LWDGQNNKIIRSRDVIFNEKVMYKD 215
LW+ + NK SR V+FNE VM+ D
Sbjct: 299 LWNPETNKTFMSRSVVFNESVMFND 323
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 42.7 bits (99), Expect(2) = 4e-06
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2
Query: 369 GKLDPKSLKCTFIGYGGDEFGYRLWN 292
GKL+P+++KC F+GYG GY+LWN
Sbjct: 403 GKLEPRAIKCLFLGYGSGVKGYKLWN 428
Score = 34.3 bits (77), Expect(2) = 4e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 289 LWDGQNNKIIRSRDVIFNEKVMYKD 215
LW+ + NK SR VIFNE VM+ D
Sbjct: 426 LWNPETNKTFMSRSVIFNESVMFND 450
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 42.7 bits (99), Expect(2) = 6e-06
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2
Query: 369 GKLDPKSLKCTFIGYGGDEFGYRLWN 292
GKL+P+++KC F+GYG GY+LWN
Sbjct: 561 GKLEPRAIKCLFLGYGSGVKGYKLWN 586
Score = 33.9 bits (76), Expect(2) = 6e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 289 LWDGQNNKIIRSRDVIFNEKVMYKD 215
LW+ + NK SR V+FNE VM+ D
Sbjct: 584 LWNPETNKTFMSRSVVFNESVMFND 608
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 42.7 bits (99), Expect(2) = 7e-06
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2
Query: 369 GKLDPKSLKCTFIGYGGDEFGYRLWN 292
GKL+P+++KC F+GYG GY+LWN
Sbjct: 606 GKLEPRAIKCLFLGYGSGVKGYKLWN 631
Score = 33.5 bits (75), Expect(2) = 7e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 289 LWDGQNNKIIRSRDVIFNEKVMYKD 215
LW+ + NK SR V+FNE VM+ D
Sbjct: 629 LWNPKTNKTFMSRSVVFNESVMFND 653