BLASTX nr result
ID: Cornus23_contig00014645
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00014645
(1385 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN67263.1| hypothetical protein VITISV_022611 [Vitis vinifera] 314 1e-82
ref|XP_002263694.1| PREDICTED: uncharacterized protein LOC100260... 311 9e-82
ref|XP_011076392.1| PREDICTED: DNA-directed RNA polymerase III s... 309 3e-81
ref|XP_009607009.1| PREDICTED: DNA-directed RNA polymerase III s... 296 2e-77
ref|XP_009607010.1| PREDICTED: DNA-directed RNA polymerase III s... 296 4e-77
ref|XP_009784283.1| PREDICTED: DNA-directed RNA polymerase III s... 295 8e-77
emb|CDP05351.1| unnamed protein product [Coffea canephora] 294 1e-76
ref|XP_009784284.1| PREDICTED: DNA-directed RNA polymerase III s... 294 1e-76
ref|XP_006355616.1| PREDICTED: DNA-directed RNA polymerase III s... 283 2e-73
ref|XP_010321476.1| PREDICTED: DNA-directed RNA polymerase III s... 280 3e-72
ref|XP_012090466.1| PREDICTED: DNA-directed RNA polymerase III s... 221 1e-54
gb|KDP22444.1| hypothetical protein JCGZ_26275 [Jatropha curcas] 220 3e-54
ref|XP_012090467.1| PREDICTED: DNA-directed RNA polymerase III s... 206 3e-50
ref|XP_002510979.1| DNA binding protein, putative [Ricinus commu... 201 1e-48
ref|XP_007038340.1| DNA binding protein, putative isoform 2 [The... 196 4e-47
ref|XP_007038339.1| DNA binding protein, putative isoform 1 [The... 180 3e-42
ref|XP_010035038.1| PREDICTED: DNA-directed RNA polymerase III s... 179 7e-42
ref|XP_012466685.1| PREDICTED: DNA-directed RNA polymerase III s... 177 2e-41
ref|XP_004146914.1| PREDICTED: DNA-directed RNA polymerase III s... 176 6e-41
gb|KHG22798.1| DNA-directed RNA polymerase III subunit RPC4 [Gos... 175 7e-41
>emb|CAN67263.1| hypothetical protein VITISV_022611 [Vitis vinifera]
Length = 348
Score = 314 bits (805), Expect = 1e-82
Identities = 186/387 (48%), Positives = 235/387 (60%), Gaps = 5/387 (1%)
Frame = -2
Query: 1237 MDPDQPSS-APRKVKFAXXXXXXXXXXXXXXXXEVVDEVDD-EATQALLKRVHEHLGRRG 1064
MD ++ SS +PRKV+FA V +E D+ + Q LL+RV+E L R+G
Sbjct: 1 MDHNESSSVSPRKVRFAPKSPPRRKPKTTAPQPVVAEEEDEAKRAQYLLRRVNEKLRRQG 60
Query: 1063 PKVEKKSVVQVAFD--GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQI-FSSYST 893
PKVEK S VQV F A S +IRT+G+ R+ NS KS+G +LK ST D +I SS ST
Sbjct: 61 PKVEKTSSVQVVFGPGAATPSDTIRTFGVHRDGNSDKSSGMELKVSTPDHEEIAVSSXST 120
Query: 892 AEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFGK 713
+PD T+G +A D S+Q RK+ Y EPWDY H+YYP TLPLR+P+SG+PE+LDEAEFG+
Sbjct: 121 TKPDETNGXFADATDDSAQIRKR-YKEPWDYVHSYYPTTLPLRKPHSGDPEILDEAEFGE 179
Query: 712 DAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSDRSXXXX 533
+ N+EYDE +NPASELGLLEE+++ RM QLP NLPLVK+SA+ G+ + S
Sbjct: 180 ASTNLEYDEKTINPASELGLLEESEKGRMFLFQLPANLPLVKQSASAKGKEIVGNSTSL- 238
Query: 532 XXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGNQMVGSSI 353
G AKG Q+ SS+
Sbjct: 239 -------------------------------------------EGIYASAKGKQVARSSL 255
Query: 352 SWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFGQDIVAIN 173
S + + C LE+L GG+ GKMLVYKSGAIKLKLG ILYDVSPG DC QD+VAIN
Sbjct: 256 SSKSIGTSEHSCRLEDLAGGHXGKMLVYKSGAIKLKLGEILYDVSPGLDCTCVQDVVAIN 315
Query: 172 TIDKDCSMLGELRKRAIITPDIDSLLN 92
T+DK C LGEL KR I+TPD+DSLL+
Sbjct: 316 TVDKHCYALGELGKRVIVTPDVDSLLD 342
>ref|XP_002263694.1| PREDICTED: uncharacterized protein LOC100260717 [Vitis vinifera]
gi|297745083|emb|CBI38675.3| unnamed protein product
[Vitis vinifera]
Length = 348
Score = 311 bits (797), Expect = 9e-82
Identities = 184/387 (47%), Positives = 235/387 (60%), Gaps = 5/387 (1%)
Frame = -2
Query: 1237 MDPDQPSS-APRKVKFAXXXXXXXXXXXXXXXXEVVDEVDD-EATQALLKRVHEHLGRRG 1064
MD ++ SS +PRKV+FA V +E D+ + Q LL+RV+E L R+G
Sbjct: 1 MDHNESSSVSPRKVRFAPKSPPRRKPKTTAPQPVVAEEEDEAKRAQYLLRRVNEKLRRQG 60
Query: 1063 PKVEKKSVVQVAFD--GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQI-FSSYST 893
PKVEK S VQV F A S +IRT+G+ R+ NS KS+G +LK ST D +I SS ST
Sbjct: 61 PKVEKTSSVQVVFGPGAATPSDTIRTFGVHRDGNSDKSSGMELKVSTPDHEEIAVSSPST 120
Query: 892 AEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFGK 713
+PD T+G +A D S+Q RK+ Y EPWDY H+YYP TLPLR+P+SG+PE+LDEAEFG+
Sbjct: 121 TKPDETNGYFADATDDSAQIRKR-YKEPWDYVHSYYPTTLPLRKPHSGDPEILDEAEFGE 179
Query: 712 DAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSDRSXXXX 533
+ N+EYDE +NPASELGLLEE+++ RM QLP NLPL K+S + G+ + + S
Sbjct: 180 ASTNLEYDEKTINPASELGLLEESEKGRMFLFQLPANLPLFKQSPSAKGKEIVENSTSL- 238
Query: 532 XXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGNQMVGSSI 353
G AKG Q+ SS+
Sbjct: 239 -------------------------------------------EGIYASAKGKQVARSSL 255
Query: 352 SWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFGQDIVAIN 173
S + + C LE+L GG++GKMLVYKSGAIKLKLG ILYDVSPG DC QD+VAIN
Sbjct: 256 SSKSIGTSEHSCRLEDLAGGHIGKMLVYKSGAIKLKLGEILYDVSPGLDCTCVQDVVAIN 315
Query: 172 TIDKDCSMLGELRKRAIITPDIDSLLN 92
T+DK C LGEL KR I+TPD+DSLL+
Sbjct: 316 TVDKHCYALGELGKRVIVTPDVDSLLD 342
>ref|XP_011076392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Sesamum
indicum] gi|747059973|ref|XP_011076393.1| PREDICTED:
DNA-directed RNA polymerase III subunit rpc4-like
[Sesamum indicum] gi|747059975|ref|XP_011076394.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc4-like [Sesamum indicum]
Length = 366
Score = 309 bits (792), Expect = 3e-81
Identities = 179/387 (46%), Positives = 232/387 (59%), Gaps = 5/387 (1%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVV--DEVDDEATQALLKR-VHEHLGRR 1067
MDPD PSS PRKVKFA E D+ DDE TQ L R VHEHL RR
Sbjct: 1 MDPDPPSSTPRKVKFAPKGPPRRAPQPLTAKSETAAQDDSDDEQTQQFLTRKVHEHLTRR 60
Query: 1066 GPKVEKKSVVQVAFDGAVSSTSIRTYGIPRERNSGKSNGSDLKD-STTDDRQIFSSYSTA 890
G KVEKKS QVAF V++ +IRT+G PRER +++ +D + + +DD+ + +S STA
Sbjct: 61 GSKVEKKSSAQVAFSHGVAANTIRTFGKPRERTGDRADAADSNEPAISDDQNLVASVSTA 120
Query: 889 EPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFGKD 710
+G ++ DA K+K++Y EPWDY H+YYP TLP RRPYSG+PE LD+ EF +
Sbjct: 121 GTEGVDENTASSADALVVKKKREYKEPWDYKHSYYPTTLPWRRPYSGDPEKLDKEEFEEA 180
Query: 709 AMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKR-SATEDGEVVSDRSXXXX 533
+ EYDEN ++ AS+LGLL ++ RMLF Q PPNLPL +R + T + +D
Sbjct: 181 S---EYDENNLSSASDLGLLGQDDTQRMLFFQFPPNLPLGRRQTGTNKRDTAND------ 231
Query: 532 XXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGNQMVGSSI 353
+ + IV SG S+G KG + +SI
Sbjct: 232 -----LKALECGVFSAASKGKEIVGCGPRV-------------SGISMGTKGKDIAPNSI 273
Query: 352 SWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFGQDIVAIN 173
+ +G K CSLEELP GYMGKMLVYKSGA+KLKLG+ILYDVSPGSDC F Q ++AI+
Sbjct: 274 NLVSGHPSNKGCSLEELPEGYMGKMLVYKSGAVKLKLGDILYDVSPGSDCTFAQSVMAID 333
Query: 172 TIDKDCSMLGELRKRAIITPDIDSLLN 92
T ++DC LG L KRA++TPDID L++
Sbjct: 334 TTNRDCCDLGALNKRAVVTPDIDFLVD 360
>ref|XP_009607009.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform
X1 [Nicotiana tomentosiformis]
Length = 358
Score = 296 bits (759), Expect = 2e-77
Identities = 182/394 (46%), Positives = 229/394 (58%), Gaps = 12/394 (3%)
Frame = -2
Query: 1237 MDPDQPSSAP--RKVKFAXXXXXXXXXXXXXXXXEVVDEVDD----EATQALLKRVHEHL 1076
MDPD PSS P RKVKFA D +D EA +A+ +RV+E L
Sbjct: 1 MDPDLPSSPPKTRKVKFAPKAPPRRKKQNPVQPKTEADGNEDTNDNEAAEAIRRRVNERL 60
Query: 1075 GRRGPKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY 899
R+ PK EKK+V +VAF G S TSIRT+G P+E GS +KD +DDR S
Sbjct: 61 TRQKPKTEKKAV-EVAFSHGVASPTSIRTFGKPKELTVNW--GSTVKDPESDDRMDIDS- 116
Query: 898 STAEPDGTSGRDL-----NAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELL 734
+ + G DL + DA +++KK+Y EPWDYHHT YP TLPLRRPY+GNPE+L
Sbjct: 117 -SPPLPSSIGADLAEISVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGNPEIL 175
Query: 733 DEAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVS 554
DEAEFGK A+N EYDEN ++PASELGLLE+ +V++LFLQLP NLPL + + +S
Sbjct: 176 DEAEFGKAAVNAEYDENNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLS 235
Query: 553 DRSXXXXXXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGN 374
+ ++ R++ AKG
Sbjct: 236 S--------------PMLKGKEATGTAPRLL-----------------------ASAKGK 258
Query: 373 QMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFG 194
++V SS K+ CSLE LP G MGKMLVYKSGAIKLKLG+ILYDVSPG DC F
Sbjct: 259 EIVDSSTISRRHNTAKEACSLEGLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFS 318
Query: 193 QDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
QD+VAINT++K C LGE+ KRA++TPD+D LLN
Sbjct: 319 QDVVAINTVEKHCCQLGEIGKRAVVTPDVDFLLN 352
>ref|XP_009607010.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform
X2 [Nicotiana tomentosiformis]
Length = 357
Score = 296 bits (757), Expect = 4e-77
Identities = 182/394 (46%), Positives = 228/394 (57%), Gaps = 12/394 (3%)
Frame = -2
Query: 1237 MDPDQPSSAP--RKVKFAXXXXXXXXXXXXXXXXEVVDEVDD----EATQALLKRVHEHL 1076
MDPD PSS P RKVKFA D +D EA +A+ +RV+E L
Sbjct: 1 MDPDLPSSPPKTRKVKFAPKAPPRRKKQNPVQPKTEADGNEDTNDNEAAEAIRRRVNERL 60
Query: 1075 GRRGPKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY 899
R+ PK EKK V+VAF G S TSIRT+G P+E GS +KD +DDR S
Sbjct: 61 TRQKPKTEKK--VEVAFSHGVASPTSIRTFGKPKELTVNW--GSTVKDPESDDRMDIDS- 115
Query: 898 STAEPDGTSGRDL-----NAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELL 734
+ + G DL + DA +++KK+Y EPWDYHHT YP TLPLRRPY+GNPE+L
Sbjct: 116 -SPPLPSSIGADLAEISVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGNPEIL 174
Query: 733 DEAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVS 554
DEAEFGK A+N EYDEN ++PASELGLLE+ +V++LFLQLP NLPL + + +S
Sbjct: 175 DEAEFGKAAVNAEYDENNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLS 234
Query: 553 DRSXXXXXXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGN 374
+ ++ R++ AKG
Sbjct: 235 S--------------PMLKGKEATGTAPRLL-----------------------ASAKGK 257
Query: 373 QMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFG 194
++V SS K+ CSLE LP G MGKMLVYKSGAIKLKLG+ILYDVSPG DC F
Sbjct: 258 EIVDSSTISRRHNTAKEACSLEGLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFS 317
Query: 193 QDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
QD+VAINT++K C LGE+ KRA++TPD+D LLN
Sbjct: 318 QDVVAINTVEKHCCQLGEIGKRAVVTPDVDFLLN 351
>ref|XP_009784283.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform
X1 [Nicotiana sylvestris]
Length = 356
Score = 295 bits (754), Expect = 8e-77
Identities = 177/392 (45%), Positives = 226/392 (57%), Gaps = 10/392 (2%)
Frame = -2
Query: 1237 MDPDQPSSAP--RKVKFAXXXXXXXXXXXXXXXXEVVDEVDD----EATQALLKRVHEHL 1076
MDPD PSS P RKVKFA D +D EA +A+L RV+E L
Sbjct: 1 MDPDLPSSPPKTRKVKFAPKAPPRRKKQNSVQHKTEADRNEDTNDNEAAEAILHRVNERL 60
Query: 1075 GRRGPKVEKKSVVQVAFDGAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY- 899
R+ PK EKK+V G S TSIRT+G P+E + GS +KD +DDR S
Sbjct: 61 TRQKPKTEKKAVEVAFAHGVASPTSIRTFGKPKELAINR--GSTVKDPESDDRMDIDSSP 118
Query: 898 ---STAEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDE 728
S+ E D + ++ DA +++KK+Y EPWDYHHT YP TLPLRRPY+G+PE+LDE
Sbjct: 119 PLPSSIEAD-LAEISVSNSDALLKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILDE 177
Query: 727 AEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSDR 548
AEFGK A N EYDEN ++PASELGLLE+ +V++LFLQLP NLPL + + +
Sbjct: 178 AEFGKAAANAEYDENNIHPASELGLLEKKDDVQILFLQLPVNLPLATKGGRDTAGCLPS- 236
Query: 547 SXXXXXXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGNQM 368
+ ++ R++ AKG ++
Sbjct: 237 -------------PMLKGKEAAGTAPRLL-----------------------ASAKGKEI 260
Query: 367 VGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFGQD 188
V SS K+ C+LE+LP G MGKMLVYKSGAIKLKLG+ILYDVSPG DC F QD
Sbjct: 261 VDSSTISRRHNTAKEACNLEKLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQD 320
Query: 187 IVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
+VAINT++K C LGE+ KRA++TPD+D LLN
Sbjct: 321 VVAINTVEKHCCQLGEIGKRAVVTPDVDFLLN 352
>emb|CDP05351.1| unnamed protein product [Coffea canephora]
Length = 380
Score = 294 bits (753), Expect = 1e-76
Identities = 175/388 (45%), Positives = 226/388 (58%), Gaps = 7/388 (1%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVV-----DEVDDEATQALLKRVHEHLG 1073
M+P+ S PR+VKFA V DDE ++LL++V+EHL
Sbjct: 1 MEPNLSPSTPRRVKFAPKGPPPRRKSTPLQPKTEVAGGGDHGGDDEINESLLRKVNEHLT 60
Query: 1072 RRGPKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDR-QIFSSY 899
RR P+ EKKS VQVAF G SSTS+RTYG +E + +SNG+ L+DS D R I S
Sbjct: 61 RRWPQAEKKSSVQVAFSHGVASSTSLRTYGSAKEGSGDRSNGTGLRDSAADTRGDIHSLP 120
Query: 898 STAEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEF 719
ST++ D +A S +++K++Y EPWDY+H+YYP LP+RRPYSG+PE+LD EF
Sbjct: 121 STSKIDWMVESSEDATVTSFKQKKREYKEPWDYNHSYYPVALPIRRPYSGDPEVLDREEF 180
Query: 718 GKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSDRSXX 539
G+ EYDE+ ++ AS+LGLLEE +MLFLQ P NLP VKR + S+ +
Sbjct: 181 GEAKAASEYDESAIHSASDLGLLEEVDGEKMLFLQFPANLPFVKRESGPGSTGTSEHASA 240
Query: 538 XXXXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGNQMVGS 359
S + GD AKG ++V S
Sbjct: 241 SVNHKHRAGS--------SRPGGSVAPTTAKGKEIPGSFPMVSGD------AKGKEIVNS 286
Query: 358 SISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFGQDIVA 179
S+S G K CSLEELP G+MGK+LV+KSGA+KLKLG++LYDVSPGS+C F QDIVA
Sbjct: 287 SVSSVVG-TNKNVCSLEELPPGFMGKILVFKSGAVKLKLGDMLYDVSPGSNCTFAQDIVA 345
Query: 178 INTIDKDCSMLGELRKRAIITPDIDSLL 95
INT DK C LGE+ KRA++TPDID LL
Sbjct: 346 INTSDKHCCNLGEVSKRAVVTPDIDHLL 373
>ref|XP_009784284.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform
X2 [Nicotiana sylvestris]
Length = 355
Score = 294 bits (752), Expect = 1e-76
Identities = 180/393 (45%), Positives = 229/393 (58%), Gaps = 11/393 (2%)
Frame = -2
Query: 1237 MDPDQPSSAP--RKVKFAXXXXXXXXXXXXXXXXEVVDEVDD----EATQALLKRVHEHL 1076
MDPD PSS P RKVKFA D +D EA +A+L RV+E L
Sbjct: 1 MDPDLPSSPPKTRKVKFAPKAPPRRKKQNSVQHKTEADRNEDTNDNEAAEAILHRVNERL 60
Query: 1075 GRRGPKVEKKSVVQVAF-DGAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY 899
R+ PK EKK V+VAF G S TSIRT+G P+E + GS +KD +DDR S
Sbjct: 61 TRQKPKTEKK--VEVAFAHGVASPTSIRTFGKPKELAINR--GSTVKDPESDDRMDIDSS 116
Query: 898 ----STAEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLD 731
S+ E D + ++ DA +++KK+Y EPWDYHHT YP TLPLRRPY+G+PE+LD
Sbjct: 117 PPLPSSIEAD-LAEISVSNSDALLKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILD 175
Query: 730 EAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSD 551
EAEFGK A N EYDEN ++PASELGLLE+ +V++LFLQLP NLPL + + +
Sbjct: 176 EAEFGKAAANAEYDENNIHPASELGLLEKKDDVQILFLQLPVNLPLATKGGRDTAGCLPS 235
Query: 550 RSXXXXXXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGNQ 371
+ ++ R++ AKG +
Sbjct: 236 --------------PMLKGKEAAGTAPRLL-----------------------ASAKGKE 258
Query: 370 MVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFGQ 191
+V SS K+ C+LE+LP G MGKMLVYKSGAIKLKLG+ILYDVSPG DC F Q
Sbjct: 259 IVDSSTISRRHNTAKEACNLEKLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQ 318
Query: 190 DIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
D+VAINT++K C LGE+ KRA++TPD+D LLN
Sbjct: 319 DVVAINTVEKHCCQLGEIGKRAVVTPDVDFLLN 351
>ref|XP_006355616.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Solanum
tuberosum]
Length = 368
Score = 283 bits (725), Expect = 2e-73
Identities = 179/394 (45%), Positives = 225/394 (57%), Gaps = 12/394 (3%)
Frame = -2
Query: 1237 MDPDQP--SSAPRKVKFAXXXXXXXXXXXXXXXXEVVD----EVDDEATQALLKRVHEHL 1076
MDPD P SS+ RKVKFA D D+EA +A+L++V+E L
Sbjct: 1 MDPDLPLSSSSTRKVKFAPKGPPRRKKQNPAQPKNEADGNEDRDDNEAAEAILRKVNERL 60
Query: 1075 GRRGPKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY 899
R+ PK EKK V+VAF G S TS +T+G RE + S LKD+ + D S
Sbjct: 61 TRQKPKTEKK--VEVAFTHGVASPTSTKTFGKSRELTVNQD--STLKDNESCDNMDIDSL 116
Query: 898 STAEPDGTSGRDLNAEDASSQ----KRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLD 731
T ++G DL ++ KRKK+Y EPWDYHH+ YP TLPLRRPY+G+PE+L+
Sbjct: 117 PTLP--SSTGPDLAEMSVNNSDSLLKRKKEYKEPWDYHHSNYPVTLPLRRPYAGDPEILN 174
Query: 730 EAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSD 551
EAEFG+ A N YDEN +NPASELGLLE+ +V++LFLQLP NLPL K A+ G +
Sbjct: 175 EAEFGEAAKNAVYDENNINPASELGLLEKKDDVQLLFLQLPANLPLSKLQASTGGRDTA- 233
Query: 550 RSXXXXXXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAKGNQ 371
++SS + A GAKG +
Sbjct: 234 --------VCLTLPGDKSDKAATLSSPMLKGKEVA--------------GSALAGAKGKE 271
Query: 370 MVGS-SISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDCIFG 194
+ S +IS K CSL+ELP G MGKMLVYKSGAIKLKLG+ILYDVSPG +C F
Sbjct: 272 IADSPTISRRHNNTTNKACSLQELPAGSMGKMLVYKSGAIKLKLGDILYDVSPGVECSFS 331
Query: 193 QDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
QD+VAINT +K C LGEL KRA++TPD+D LLN
Sbjct: 332 QDVVAINTAEKQCCQLGELGKRAVVTPDVDFLLN 365
>ref|XP_010321476.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Solanum
lycopersicum]
Length = 371
Score = 280 bits (715), Expect = 3e-72
Identities = 181/397 (45%), Positives = 224/397 (56%), Gaps = 15/397 (3%)
Frame = -2
Query: 1237 MDPDQP--SSAPRKVKFAXXXXXXXXXXXXXXXXEVVD----EVDDEATQALLKRVHEHL 1076
MDPD P SS+ RKVKFA D D+EA +A+L++V+E L
Sbjct: 1 MDPDLPLSSSSTRKVKFAPKGPPRRKKQNPAQPKNEADGNEDRDDNEAAEAVLRKVNERL 60
Query: 1075 GRRGPKVEKKSVVQVAF-DGAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY 899
R+ PK EKK V+VAF G S TS +T G RE + S LKD+ + D S
Sbjct: 61 TRQKPKTEKK--VEVAFAHGVASPTSTKTSGKSRELTVNQD--STLKDNESCDNMDIDSL 116
Query: 898 STAEPDGTSGRDLNAEDASSQ----KRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLD 731
T ++G DL ++ KRKK+Y EPWDYHH+ YP TLPLRRPY+G+PE+L+
Sbjct: 117 PTLP--SSTGPDLAEMSVNNSDSLLKRKKEYKEPWDYHHSNYPVTLPLRRPYAGDPEILN 174
Query: 730 EAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGE---V 560
EAEFG+ A N EYDEN +NPASELGLLE+ +V++LFLQLP NLPL K A+ G V
Sbjct: 175 EAEFGEAAKNAEYDENNINPASELGLLEKKDDVQLLFLQLPANLPLSKLQASTGGRDTAV 234
Query: 559 VSDRSXXXXXXXXXXXXXXXXXXGVSMSSERIVXXXXXXXXXXXXXXXSLGDSGASVGAK 380
V+ S+ R + AK
Sbjct: 235 SLTLPGDKSDKAATLSSPMLKGKEVAGSAPRFL-----------------------ASAK 271
Query: 379 GNQMVGSS-ISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSDC 203
G ++ SS IS K CSL+ELP G MGKMLVYKSGAIKLKLG+ILYDVSPG +C
Sbjct: 272 GKEISDSSTISRRHNNTTNKVCSLQELPAGSMGKMLVYKSGAIKLKLGDILYDVSPGVEC 331
Query: 202 IFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
F QD+VAINT +K C LGEL KRA++TPD+D LLN
Sbjct: 332 SFSQDVVAINTAEKQCCQLGELGKRAVVTPDVDFLLN 368
>ref|XP_012090466.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1
[Jatropha curcas]
Length = 350
Score = 221 bits (563), Expect = 1e-54
Identities = 127/241 (52%), Positives = 155/241 (64%), Gaps = 9/241 (3%)
Frame = -2
Query: 1258 FVFTHNS---MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDE----ATQAL 1100
F+F+ +S MD +QPS PRK KF EV D +DE Q L
Sbjct: 10 FLFSPSSFAGMDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDEDEAAQAQKL 69
Query: 1099 LKRVHEHLGRRGPKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTD 923
+++ +E+L R+ PKVEKKS VQVAF GA STSIR YG+P N+G S+ D+KDS D
Sbjct: 70 MRKFNENLRRKVPKVEKKSSVQVAFGPGAAPSTSIRKYGVPGCENAGSSSRLDIKDSDND 129
Query: 922 DRQIF-SSYSTAEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGN 746
DR+I SS STAE DG S A K KKDY EPWDY+HTYYP TLPLRRPYSG+
Sbjct: 130 DRRIVVSSLSTAEEDGASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGD 189
Query: 745 PELLDEAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDG 566
PELL+E EFG+ A +EY+EN + PAS+LGLLEE+ + R+ F QLP LPLVKRSA G
Sbjct: 190 PELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKG 249
Query: 565 E 563
+
Sbjct: 250 K 250
Score = 118 bits (296), Expect = 1e-23
Identities = 60/98 (61%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Frame = -2
Query: 382 KGNQMV-GSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSD 206
KG + V GS+ S GT A KK S + L GYMGKMLVY+SGA+K+KLG+ LYDVSPGSD
Sbjct: 248 KGKEKVEGSTPSQGTS-ALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSD 306
Query: 205 CIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
C F QD++AI+ K C +G+LRKRA++TPD+DSLLN
Sbjct: 307 CTFAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLN 344
>gb|KDP22444.1| hypothetical protein JCGZ_26275 [Jatropha curcas]
Length = 331
Score = 220 bits (560), Expect = 3e-54
Identities = 124/231 (53%), Positives = 149/231 (64%), Gaps = 6/231 (2%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDE----ATQALLKRVHEHLGR 1070
MD +QPS PRK KF EV D +DE Q L+++ +E+L R
Sbjct: 1 MDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDEDEAAQAQKLMRKFNENLRR 60
Query: 1069 RGPKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIF-SSYS 896
+ PKVEKKS VQVAF GA STSIR YG+P N+G S+ D+KDS DDR+I SS S
Sbjct: 61 KVPKVEKKSSVQVAFGPGAAPSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSSLS 120
Query: 895 TAEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFG 716
TAE DG S A K KKDY EPWDY+HTYYP TLPLRRPYSG+PELL+E EFG
Sbjct: 121 TAEEDGASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGDPELLNEEEFG 180
Query: 715 KDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGE 563
+ A +EY+EN + PAS+LGLLEE+ + R+ F QLP LPLVKRSA G+
Sbjct: 181 EAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKGK 231
Score = 118 bits (296), Expect = 1e-23
Identities = 60/98 (61%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Frame = -2
Query: 382 KGNQMV-GSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSD 206
KG + V GS+ S GT A KK S + L GYMGKMLVY+SGA+K+KLG+ LYDVSPGSD
Sbjct: 229 KGKEKVEGSTPSQGTS-ALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSD 287
Query: 205 CIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
C F QD++AI+ K C +G+LRKRA++TPD+DSLLN
Sbjct: 288 CTFAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLN 325
>ref|XP_012090467.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X2
[Jatropha curcas]
Length = 341
Score = 206 bits (525), Expect = 3e-50
Identities = 120/240 (50%), Positives = 148/240 (61%), Gaps = 8/240 (3%)
Frame = -2
Query: 1258 FVFTHNS---MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDE----ATQAL 1100
F+F+ +S MD +QPS PRK KF EV D +DE Q L
Sbjct: 10 FLFSPSSFAGMDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDEDEAAQAQKL 69
Query: 1099 LKRVHEHLGRRGPKVEKKSVVQVAFDGAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDD 920
+++ +E+L R+ PKVEKK A STSIR YG+P N+G S+ D+KDS DD
Sbjct: 70 MRKFNENLRRKVPKVEKKC--------AAPSTSIRKYGVPGCENAGSSSRLDIKDSDNDD 121
Query: 919 RQIF-SSYSTAEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNP 743
R+I SS STAE DG S A K KKDY EPWDY+HTYYP TLPLRRPYSG+P
Sbjct: 122 RRIVVSSLSTAEEDGASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGDP 181
Query: 742 ELLDEAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGE 563
ELL+E EFG+ A +EY+EN + PAS+LGLLEE+ + R+ F QLP LPLVKRSA G+
Sbjct: 182 ELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKGK 241
Score = 118 bits (296), Expect = 1e-23
Identities = 60/98 (61%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Frame = -2
Query: 382 KGNQMV-GSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSD 206
KG + V GS+ S GT A KK S + L GYMGKMLVY+SGA+K+KLG+ LYDVSPGSD
Sbjct: 239 KGKEKVEGSTPSQGTS-ALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSD 297
Query: 205 CIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
C F QD++AI+ K C +G+LRKRA++TPD+DSLLN
Sbjct: 298 CTFAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLN 335
>ref|XP_002510979.1| DNA binding protein, putative [Ricinus communis]
gi|223550094|gb|EEF51581.1| DNA binding protein, putative
[Ricinus communis]
Length = 328
Score = 201 bits (511), Expect = 1e-48
Identities = 122/237 (51%), Positives = 150/237 (63%), Gaps = 6/237 (2%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEV--VDEVDDEATQA--LLKRVHEHLGR 1070
MD +QPS + RKVKF EV VD +DEA QA L+++ +E+ R
Sbjct: 1 MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60
Query: 1069 RGPKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQI-FSSYS 896
+GP+VEKKS VQVAF GA SSTSIRT+G+ + N S +KDST DD +I SS S
Sbjct: 61 QGPRVEKKSTVQVAFGPGATSSTSIRTFGVSKGENPVSSG---IKDSTDDDGKIVISSLS 117
Query: 895 TAEPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFG 716
T + D DA K KKDY EPWDY TYYP TLPLRRPYSG+P LLDEAEFG
Sbjct: 118 TDKEDEIINCASEDIDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLLDEAEFG 177
Query: 715 KDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSDRS 545
+ A +EYDE+ +NPAS+L LLEE +M+F QLP LPLVKRSA+ G+ ++ S
Sbjct: 178 EAARKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGKEKAEGS 234
Score = 121 bits (303), Expect = 2e-24
Identities = 60/101 (59%), Positives = 73/101 (72%)
Frame = -2
Query: 394 SVGAKGNQMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSP 215
S AKG + SI A KK SL+ L GYMGKMLVY+SGA+KLKLG+ LYDVS
Sbjct: 222 SASAKGKEKAEGSIPSQGKNAAKKESSLDGLSAGYMGKMLVYRSGAVKLKLGDTLYDVSQ 281
Query: 214 GSDCIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
GSDC+F QD++AINT K C +GEL KRA++TPD+DSLL+
Sbjct: 282 GSDCMFAQDVMAINTAAKHCCTIGELEKRAVVTPDVDSLLD 322
>ref|XP_007038340.1| DNA binding protein, putative isoform 2 [Theobroma cacao]
gi|508775585|gb|EOY22841.1| DNA binding protein, putative
isoform 2 [Theobroma cacao]
Length = 328
Score = 196 bits (498), Expect = 4e-47
Identities = 113/229 (49%), Positives = 144/229 (62%), Gaps = 4/229 (1%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDEATQA--LLKRVHEHLGRRG 1064
MD D PSS RKV+FA V++ D EA QA LL R +E+ R+
Sbjct: 1 MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60
Query: 1063 PKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY-STA 890
PKVEKKS Q++F GA SS +R YG R SGKS S + +D QI S+ S +
Sbjct: 61 PKVEKKSSAQISFGPGAPSSNLLRAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFPSAS 120
Query: 889 EPDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFGKD 710
+ D T +A +AS+ K K++Y EPWDYHHTYYP TLPLRRPYSG+PELLD+AEF +
Sbjct: 121 KEDRTDICSSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQAEF-VE 179
Query: 709 AMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGE 563
A EYDE +NPAS+LGLLEE ++ +M F QLP NLP++KR A+ G+
Sbjct: 180 AARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGK 228
Score = 130 bits (326), Expect = 4e-27
Identities = 63/99 (63%), Positives = 77/99 (77%)
Frame = -2
Query: 388 GAKGNQMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGS 209
G + + +GSS +G A KK C LEELPGG+MGKMLVYKSGA+KLKLG LYDVSPGS
Sbjct: 227 GKEKAENLGSSERFG---ALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGS 283
Query: 208 DCIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
DCIF QD+ A+NT +K C ++GEL KR ++TPDI S+LN
Sbjct: 284 DCIFAQDVAAVNTTEKHCCVIGELGKRVVVTPDISSVLN 322
>ref|XP_007038339.1| DNA binding protein, putative isoform 1 [Theobroma cacao]
gi|508775584|gb|EOY22840.1| DNA binding protein, putative
isoform 1 [Theobroma cacao]
Length = 359
Score = 180 bits (456), Expect = 3e-42
Identities = 113/260 (43%), Positives = 144/260 (55%), Gaps = 35/260 (13%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDEATQA--LLKRVHEHLGRRG 1064
MD D PSS RKV+FA V++ D EA QA LL R +E+ R+
Sbjct: 1 MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60
Query: 1063 PKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSY-STA 890
PKVEKKS Q++F GA SS +R YG R SGKS S + +D QI S+ S +
Sbjct: 61 PKVEKKSSAQISFGPGAPSSNLLRAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFPSAS 120
Query: 889 EPDGTSGRDLNAEDASSQKRKKDYIEPW-------------------------------D 803
+ D T +A +AS+ K K++Y EPW D
Sbjct: 121 KEDRTDICSSDAIEASAPKIKREYREPWVKVCSLFVCLRPSAHLCAIPLILLSSMIALQD 180
Query: 802 YHHTYYPATLPLRRPYSGNPELLDEAEFGKDAMNMEYDENIVNPASELGLLEENKEVRML 623
YHHTYYP TLPLRRPYSG+PELLD+AEF +A EYDE +NPAS+LGLLEE ++ +M
Sbjct: 181 YHHTYYPITLPLRRPYSGDPELLDQAEF-VEAARKEYDEKTINPASDLGLLEEGEKGKMF 239
Query: 622 FLQLPPNLPLVKRSATEDGE 563
F QLP NLP++KR A+ G+
Sbjct: 240 FFQLPANLPVIKRLASTKGK 259
Score = 130 bits (326), Expect = 4e-27
Identities = 63/99 (63%), Positives = 77/99 (77%)
Frame = -2
Query: 388 GAKGNQMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGS 209
G + + +GSS +G A KK C LEELPGG+MGKMLVYKSGA+KLKLG LYDVSPGS
Sbjct: 258 GKEKAENLGSSERFG---ALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGS 314
Query: 208 DCIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
DCIF QD+ A+NT +K C ++GEL KR ++TPDI S+LN
Sbjct: 315 DCIFAQDVAAVNTTEKHCCVIGELGKRVVVTPDISSVLN 353
>ref|XP_010035038.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like
[Eucalyptus grandis] gi|629079862|gb|KCW46307.1|
hypothetical protein EUGRSUZ_K00171 [Eucalyptus grandis]
Length = 331
Score = 179 bits (453), Expect = 7e-42
Identities = 100/199 (50%), Positives = 132/199 (66%), Gaps = 5/199 (2%)
Frame = -2
Query: 1126 VDDEATQALLKRVHEHLGRRGPKVEKKSVVQVAFD-GAVSSTS-IRTYGIPRERNSGKSN 953
V+ EA Q LL+R +E+ G++G +V KS VQVAF GA SS S IRT+G+P+E S +
Sbjct: 42 VEAEA-QMLLRRFNENFGQQGARVGNKSSVQVAFGPGAPSSASTIRTFGVPKEERSDQGC 100
Query: 952 GSDLKDSTTDDRQIFSSYSTAEPDGTSGRDLNAEDASSQ---KRKKDYIEPWDYHHTYYP 782
G L+ Q S AE D T D EDA+++ K KK+Y EPWD+HH+YYP
Sbjct: 101 GPRLRSYAAAKGQTISPPIVAETDAT---DATMEDATAEVPRKSKKEYKEPWDFHHSYYP 157
Query: 781 ATLPLRRPYSGNPELLDEAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPN 602
TLPLR PYSG+PE+L+E EFG+ N EYDE I+N AS+LGLLE++ +MLF QLPPN
Sbjct: 158 TTLPLRMPYSGDPEILNEKEFGEATRNFEYDEGIINAASDLGLLEDSGRGKMLFFQLPPN 217
Query: 601 LPLVKRSATEDGEVVSDRS 545
LP V+RS + G+ ++ S
Sbjct: 218 LPSVRRSTSVKGKEKAESS 236
Score = 122 bits (306), Expect = 7e-25
Identities = 61/101 (60%), Positives = 71/101 (70%)
Frame = -2
Query: 394 SVGAKGNQMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSP 215
S KG + SS S A ++ C LE+L GGYMGK++VYKSGA+KLKLG LYDVSP
Sbjct: 224 STSVKGKEKAESSAS-SAADASERDCKLEDLSGGYMGKLVVYKSGAVKLKLGETLYDVSP 282
Query: 214 GSDCIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
GSDCIF QD+ +NT DK LGE+ KR IITPD DSLLN
Sbjct: 283 GSDCIFAQDVAVVNTADKHFCSLGEVGKRGIITPDFDSLLN 323
>ref|XP_012466685.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1
[Gossypium raimondii] gi|763740373|gb|KJB07872.1|
hypothetical protein B456_001G049700 [Gossypium
raimondii]
Length = 302
Score = 177 bits (449), Expect = 2e-41
Identities = 109/234 (46%), Positives = 140/234 (59%), Gaps = 3/234 (1%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDEATQA--LLKRVHEHLGRRG 1064
MD D PSS RKV+FA + D+EA QA LL R +E+L R+
Sbjct: 1 MDVDGPSSGRRKVRFAPKAPQSSRKPKLAVAKSETSDEDEEAAQAQYLLGRFNENLTRQK 60
Query: 1063 PKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSYSTAE 887
PKVEKKS VQ+AF GA SSTS+R+YG K G L DS+ ST++
Sbjct: 61 PKVEKKSSVQIAFGPGAPSSTSLRSYG-------NKRAGRILDDSS----------STSK 103
Query: 886 PDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFGKDA 707
D T +A +A + + K +Y EPWDY+ TYYP TLPLRRPYSG+PELLDEAEF + A
Sbjct: 104 EDCTDICSSDAIEAPAPRVKSEYREPWDYNRTYYPTTLPLRRPYSGDPELLDEAEFVETA 163
Query: 706 MNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSDRS 545
EYDE +NPAS+LGLLEE + +MLF Q P NLP +K+ ++ G+ ++ S
Sbjct: 164 -KKEYDETTINPASDLGLLEEGDKQKMLFFQFPGNLPRIKQPVSKKGKEKAEHS 216
Score = 109 bits (272), Expect = 6e-21
Identities = 51/98 (52%), Positives = 65/98 (66%)
Frame = -2
Query: 391 VGAKGNQMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPG 212
V KG + S+S A KK C LEELP GY+GKMLVYKSGA+KLK+G L+D S G
Sbjct: 205 VSKKGKEKAEHSVSSDRFGALKKGCRLEELPEGYVGKMLVYKSGAVKLKIGETLFDASTG 264
Query: 211 SDCIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSL 98
DC+F QD+ A NT K C ++GE+ +R ++TPD L
Sbjct: 265 EDCVFAQDVAAFNTASKQCCVIGEVGQRVVVTPDFSFL 302
>ref|XP_004146914.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis
sativus] gi|700197993|gb|KGN53151.1| hypothetical protein
Csa_4G022870 [Cucumis sativus]
Length = 334
Score = 176 bits (445), Expect = 6e-41
Identities = 107/242 (44%), Positives = 134/242 (55%), Gaps = 17/242 (7%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDE-------ATQALLKRVHEH 1079
M PS RKVKFA V + +DE T+ LL+R +E+
Sbjct: 1 MKNSDPSPPRRKVKFAPKSSQRKRPPPPP-----VQKTEDEDGEGYVAQTRYLLRRANEN 55
Query: 1078 LGRRGPKVEKKSVVQVAFDGAVSSTS--IRTYGIPRERNSGKSNGSDLKDSTTDDRQ-IF 908
LG+R KVEKKS VQVAF STS IRTYG+P+ N + N D++ +D + +
Sbjct: 56 LGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKN--DIEPEVDEDEEFVL 113
Query: 907 SSYSTAEPDGT-------SGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSG 749
DG G ++ A K K+DY EPWDY ++YYP TLPLR PYSG
Sbjct: 114 PVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSG 173
Query: 748 NPELLDEAEFGKDAMNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATED 569
+PE LDEAEFG+D MN EYDEN V PA +LGLL+EN E F QLP LPL K+S+T
Sbjct: 174 DPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTAT 233
Query: 568 GE 563
G+
Sbjct: 234 GK 235
Score = 97.1 bits (240), Expect = 3e-17
Identities = 51/98 (52%), Positives = 67/98 (68%)
Frame = -2
Query: 385 AKGNQMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPGSD 206
A G + VG+S S + L++L G MGK+L+YKSGAIKL+LG+ILYDVS GS+
Sbjct: 232 ATGKEKVGNSRS-SNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSN 290
Query: 205 CIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSLLN 92
C F Q +VAINT + C LG++ R ++TPDI SLLN
Sbjct: 291 CSFLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLN 328
>gb|KHG22798.1| DNA-directed RNA polymerase III subunit RPC4 [Gossypium arboreum]
Length = 302
Score = 175 bits (444), Expect = 7e-41
Identities = 108/234 (46%), Positives = 140/234 (59%), Gaps = 3/234 (1%)
Frame = -2
Query: 1237 MDPDQPSSAPRKVKFAXXXXXXXXXXXXXXXXEVVDEVDDEATQA--LLKRVHEHLGRRG 1064
MD D PSS RKV+FA + D+EA QA LL R +E+L R+
Sbjct: 1 MDVDGPSSGRRKVRFAPKAPQSSRKPKLAVAKSETSDEDEEAAQAQYLLGRFNENLTRQK 60
Query: 1063 PKVEKKSVVQVAFD-GAVSSTSIRTYGIPRERNSGKSNGSDLKDSTTDDRQIFSSYSTAE 887
PKVEKKS VQ+AF GA SSTS+R+YG K G L DS+ ST++
Sbjct: 61 PKVEKKSSVQIAFGPGAPSSTSLRSYG-------NKRAGRILDDSS----------STSK 103
Query: 886 PDGTSGRDLNAEDASSQKRKKDYIEPWDYHHTYYPATLPLRRPYSGNPELLDEAEFGKDA 707
D T +A +A + + K +Y EPWDY+ TYYP TLPLRRPYSG+PELLDEAEF + A
Sbjct: 104 EDCTDICSSDAIEAPAPRVKSEYREPWDYNRTYYPTTLPLRRPYSGDPELLDEAEFVETA 163
Query: 706 MNMEYDENIVNPASELGLLEENKEVRMLFLQLPPNLPLVKRSATEDGEVVSDRS 545
EYDE +NPAS+LGLL+E + +MLF Q P NLP +K+ ++ G+ ++ S
Sbjct: 164 -KKEYDEATINPASDLGLLQEGDKQKMLFFQFPGNLPRIKQPVSKKGKEKAEHS 216
Score = 110 bits (276), Expect = 2e-21
Identities = 52/98 (53%), Positives = 66/98 (67%)
Frame = -2
Query: 391 VGAKGNQMVGSSISWGTGVAPKKHCSLEELPGGYMGKMLVYKSGAIKLKLGNILYDVSPG 212
V KG + S+S A KK C LEELP GY+GKMLVYKSGA+KLK+G L+DVSPG
Sbjct: 205 VSKKGKEKAEHSVSSDRFGALKKGCRLEELPEGYVGKMLVYKSGAVKLKIGETLFDVSPG 264
Query: 211 SDCIFGQDIVAINTIDKDCSMLGELRKRAIITPDIDSL 98
C+F QD+ A NT K C ++GE+ +R ++TPD L
Sbjct: 265 EACVFAQDVAAFNTASKQCCVIGEVGQRVVVTPDFSFL 302