BLASTX nr result

ID: Cornus23_contig00013573 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00013573
         (403 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010656902.1| PREDICTED: DNA ligase 4 isoform X2 [Vitis vi...    75   2e-11
emb|CBI17913.3| unnamed protein product [Vitis vinifera]               75   2e-11
ref|XP_002263967.1| PREDICTED: DNA ligase 4 isoform X1 [Vitis vi...    75   2e-11
ref|XP_002534602.1| conserved hypothetical protein [Ricinus comm...    66   9e-09
ref|XP_008223923.1| PREDICTED: DNA ligase 4 [Prunus mume]              64   4e-08
ref|XP_007225204.1| hypothetical protein PRUPE_ppa002057mg [Prun...    64   4e-08
ref|XP_012068473.1| PREDICTED: DNA ligase 4 [Jatropha curcas]          64   6e-08
gb|KDP41107.1| hypothetical protein JCGZ_03237 [Jatropha curcas]       64   6e-08
ref|XP_010111548.1| DNA ligase 4 [Morus notabilis] gi|587944758|...    62   1e-07
gb|KHG24358.1| DNA ligase 4 -like protein [Gossypium arboreum]         62   1e-07
ref|XP_010273585.1| PREDICTED: putative DNA ligase 4 isoform X3 ...    62   2e-07
ref|XP_010273584.1| PREDICTED: DNA ligase 4 isoform X2 [Nelumbo ...    62   2e-07
ref|XP_010273583.1| PREDICTED: DNA ligase 4 isoform X1 [Nelumbo ...    62   2e-07
ref|XP_011094107.1| PREDICTED: DNA ligase 4 [Sesamum indicum]          60   8e-07
ref|XP_007014429.1| DNA ligase IV [Theobroma cacao] gi|508784792...    60   8e-07
gb|KDO61940.1| hypothetical protein CISIN_1g0010821mg, partial [...    58   2e-06
ref|XP_006474277.1| PREDICTED: DNA ligase 4-like isoform X1 [Cit...    58   2e-06
ref|XP_006453240.1| hypothetical protein CICLE_v10007283mg [Citr...    58   2e-06
ref|XP_006453239.1| hypothetical protein CICLE_v10007283mg [Citr...    58   2e-06
ref|XP_009359940.1| PREDICTED: DNA ligase 4 [Pyrus x bretschneid...    57   5e-06

>ref|XP_010656902.1| PREDICTED: DNA ligase 4 isoform X2 [Vitis vinifera]
          Length = 1044

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 41/84 (48%), Positives = 50/84 (59%)
 Frame = -1

Query: 403  KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXX 224
            +A +IEL S             EVMVDPV AMLLDMIPSLG KK E+++P+++DE     
Sbjct: 961  RAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVE 1020

Query: 223  XXXXXXXXXKISYKDVADELLKDW 152
                     K+SYKDVA  LLKDW
Sbjct: 1021 QGAEPVKKKKVSYKDVAGALLKDW 1044


>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 41/84 (48%), Positives = 50/84 (59%)
 Frame = -1

Query: 403  KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXX 224
            +A +IEL S             EVMVDPV AMLLDMIPSLG KK E+++P+++DE     
Sbjct: 1080 RAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVE 1139

Query: 223  XXXXXXXXXKISYKDVADELLKDW 152
                     K+SYKDVA  LLKDW
Sbjct: 1140 QGAEPVKKKKVSYKDVAGALLKDW 1163


>ref|XP_002263967.1| PREDICTED: DNA ligase 4 isoform X1 [Vitis vinifera]
          Length = 1162

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 41/84 (48%), Positives = 50/84 (59%)
 Frame = -1

Query: 403  KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXX 224
            +A +IEL S             EVMVDPV AMLLDMIPSLG KK E+++P+++DE     
Sbjct: 1079 RAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVE 1138

Query: 223  XXXXXXXXXKISYKDVADELLKDW 152
                     K+SYKDVA  LLKDW
Sbjct: 1139 QGAEPVKKKKVSYKDVAGALLKDW 1162


>ref|XP_002534602.1| conserved hypothetical protein [Ricinus communis]
           gi|223524943|gb|EEF27780.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 251

 Score = 66.2 bits (160), Expect = 9e-09
 Identities = 38/83 (45%), Positives = 47/83 (56%)
 Frame = -1

Query: 403 KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXX 224
           K H  E+G  ++          E+MVDP+HAMLLDMIPSLG + VE S+ V E E     
Sbjct: 170 KTHS-EIGGRHDVEEKENPDKLEIMVDPIHAMLLDMIPSLGVRNVEISNQVFEREKPAGD 228

Query: 223 XXXXXXXXXKISYKDVADELLKD 155
                    K+SYKDVA E+LKD
Sbjct: 229 PTAQPVKKKKVSYKDVASEMLKD 251


>ref|XP_008223923.1| PREDICTED: DNA ligase 4 [Prunus mume]
          Length = 1130

 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 34/61 (55%), Positives = 38/61 (62%)
 Frame = -1

Query: 334  VMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXXXXXXXXXXXKISYKDVADELLKD 155
            VM DPV AML DMIPSL  KKVET++  +E E              K+SYKDVA ELLKD
Sbjct: 1070 VMADPVQAMLFDMIPSLAMKKVETTNTSIEKEKPAVDLNAGPSKKKKVSYKDVAGELLKD 1129

Query: 154  W 152
            W
Sbjct: 1130 W 1130


>ref|XP_007225204.1| hypothetical protein PRUPE_ppa002057mg [Prunus persica]
           gi|462422140|gb|EMJ26403.1| hypothetical protein
           PRUPE_ppa002057mg [Prunus persica]
          Length = 723

 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 34/61 (55%), Positives = 38/61 (62%)
 Frame = -1

Query: 334 VMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXXXXXXXXXXXKISYKDVADELLKD 155
           VM DPV AML DMIPSL  KKVET++  +E E              K+SYKDVA ELLKD
Sbjct: 663 VMADPVQAMLFDMIPSLAMKKVETTNTSIEKEKPAVDLNAGPSKKKKVSYKDVAGELLKD 722

Query: 154 W 152
           W
Sbjct: 723 W 723


>ref|XP_012068473.1| PREDICTED: DNA ligase 4 [Jatropha curcas]
          Length = 1158

 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 38/83 (45%), Positives = 43/83 (51%)
 Frame = -1

Query: 403  KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXX 224
            K   I  G G            EVMVDPVHAMLLDMIP LG KK+E   P  ++E     
Sbjct: 1076 KTPNIAKGEGQYGKEKENSEKLEVMVDPVHAMLLDMIPGLGMKKMEKPKPFPDNERPAID 1135

Query: 223  XXXXXXXXXKISYKDVADELLKD 155
                     K+SYKD+A ELLKD
Sbjct: 1136 PTAPPAKKKKVSYKDIAGELLKD 1158


>gb|KDP41107.1| hypothetical protein JCGZ_03237 [Jatropha curcas]
          Length = 481

 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 38/83 (45%), Positives = 43/83 (51%)
 Frame = -1

Query: 403 KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXX 224
           K   I  G G            EVMVDPVHAMLLDMIP LG KK+E   P  ++E     
Sbjct: 399 KTPNIAKGEGQYGKEKENSEKLEVMVDPVHAMLLDMIPGLGMKKMEKPKPFPDNERPAID 458

Query: 223 XXXXXXXXXKISYKDVADELLKD 155
                    K+SYKD+A ELLKD
Sbjct: 459 PTAPPAKKKKVSYKDIAGELLKD 481


>ref|XP_010111548.1| DNA ligase 4 [Morus notabilis] gi|587944758|gb|EXC31206.1| DNA
           ligase 4 [Morus notabilis]
          Length = 821

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 31/61 (50%), Positives = 39/61 (63%)
 Frame = -1

Query: 334 VMVDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXXXXXXXXXXXKISYKDVADELLKD 155
           +M DPVHAMLLDMIP LG +KVE ++   ED+              K+SYKD+A +LLKD
Sbjct: 761 LMTDPVHAMLLDMIPRLGKEKVEITNTSTEDKKPAVDPNAPQPKKKKVSYKDIAGDLLKD 820

Query: 154 W 152
           W
Sbjct: 821 W 821


>gb|KHG24358.1| DNA ligase 4 -like protein [Gossypium arboreum]
          Length = 1157

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 43/100 (43%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
 Frame = -1

Query: 403  KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHP---------- 254
            K   +EL  G            EVMVDPV AMLLDMIPSLG K VET++           
Sbjct: 1058 KFDHMELDEGKYGHEISNSEKLEVMVDPVQAMLLDMIPSLGIKHVETTNSVVQNEKPHMD 1117

Query: 253  ------VLEDEXXXXXXXXXXXXXXKISYKDVADELLKDW 152
                  V+EDE              K+SYKDVA ELLKDW
Sbjct: 1118 NDADIRVVEDEKLDADFIPQPQKKKKVSYKDVAGELLKDW 1157


>ref|XP_010273585.1| PREDICTED: putative DNA ligase 4 isoform X3 [Nelumbo nucifera]
          Length = 1099

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 34/62 (54%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = -1

Query: 334  VMVDPVHAMLLDMIPSLGTKKVETSHPVLE-DEXXXXXXXXXXXXXXKISYKDVADELLK 158
            +MVDPV AMLLDMIPSLG  K+ET+  V+E  +              K+SYKDVA ELLK
Sbjct: 1038 MMVDPVQAMLLDMIPSLGVNKIETADSVIEIKKPLEDPDAEPVKKKKKVSYKDVAGELLK 1097

Query: 157  DW 152
            DW
Sbjct: 1098 DW 1099


>ref|XP_010273584.1| PREDICTED: DNA ligase 4 isoform X2 [Nelumbo nucifera]
          Length = 1143

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 34/62 (54%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = -1

Query: 334  VMVDPVHAMLLDMIPSLGTKKVETSHPVLE-DEXXXXXXXXXXXXXXKISYKDVADELLK 158
            +MVDPV AMLLDMIPSLG  K+ET+  V+E  +              K+SYKDVA ELLK
Sbjct: 1082 MMVDPVQAMLLDMIPSLGVNKIETADSVIEIKKPLEDPDAEPVKKKKKVSYKDVAGELLK 1141

Query: 157  DW 152
            DW
Sbjct: 1142 DW 1143


>ref|XP_010273583.1| PREDICTED: DNA ligase 4 isoform X1 [Nelumbo nucifera]
          Length = 1168

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 34/62 (54%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = -1

Query: 334  VMVDPVHAMLLDMIPSLGTKKVETSHPVLE-DEXXXXXXXXXXXXXXKISYKDVADELLK 158
            +MVDPV AMLLDMIPSLG  K+ET+  V+E  +              K+SYKDVA ELLK
Sbjct: 1107 MMVDPVQAMLLDMIPSLGVNKIETADSVIEIKKPLEDPDAEPVKKKKKVSYKDVAGELLK 1166

Query: 157  DW 152
            DW
Sbjct: 1167 DW 1168


>ref|XP_011094107.1| PREDICTED: DNA ligase 4 [Sesamum indicum]
          Length = 1222

 Score = 59.7 bits (143), Expect = 8e-07
 Identities = 39/91 (42%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
 Frame = -1

Query: 388  ELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVL------------E 245
            E+GSGY           +  VDPV AMLLDM+P L TKKVE++ PV             E
Sbjct: 1133 EVGSGYGGSTCYNDRLEDT-VDPVQAMLLDMVPILATKKVESAIPVSDEVKTRHPDPAPE 1191

Query: 244  DEXXXXXXXXXXXXXXKISYKDVADELLKDW 152
            +E              K+SYKDVA+ELLKDW
Sbjct: 1192 EEKIPLDDETKPVKKRKVSYKDVANELLKDW 1222


>ref|XP_007014429.1| DNA ligase IV [Theobroma cacao] gi|508784792|gb|EOY32048.1| DNA
            ligase IV [Theobroma cacao]
          Length = 1195

 Score = 59.7 bits (143), Expect = 8e-07
 Identities = 37/77 (48%), Positives = 41/77 (53%), Gaps = 16/77 (20%)
 Frame = -1

Query: 334  VMVDPVHAMLLDMIPSLGTKKVETSH----------------PVLEDEXXXXXXXXXXXX 203
            VMVDPV AMLLDMIPSLG K VE ++                PV+ED             
Sbjct: 1119 VMVDPVQAMLLDMIPSLGIKHVEATNSFVENEKPPADNNAEIPVVEDYKLDADFIAPPVK 1178

Query: 202  XXKISYKDVADELLKDW 152
              K+SYKDVA ELLKDW
Sbjct: 1179 KKKVSYKDVAGELLKDW 1195


>gb|KDO61940.1| hypothetical protein CISIN_1g0010821mg, partial [Citrus sinensis]
           gi|641843039|gb|KDO61941.1| hypothetical protein
           CISIN_1g0010821mg, partial [Citrus sinensis]
           gi|641843040|gb|KDO61942.1| hypothetical protein
           CISIN_1g0010821mg, partial [Citrus sinensis]
           gi|641843041|gb|KDO61943.1| hypothetical protein
           CISIN_1g0010821mg, partial [Citrus sinensis]
           gi|641843042|gb|KDO61944.1| hypothetical protein
           CISIN_1g0010821mg, partial [Citrus sinensis]
          Length = 743

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 29/59 (49%), Positives = 38/59 (64%)
 Frame = -1

Query: 328 VDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXXXXXXXXXXXKISYKDVADELLKDW 152
           VD V AMLLDMIPSLG K  +T++P+ ++E              K+SYKD+A +LLKDW
Sbjct: 685 VDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW 743


>ref|XP_006474277.1| PREDICTED: DNA ligase 4-like isoform X1 [Citrus sinensis]
            gi|568840649|ref|XP_006474278.1| PREDICTED: DNA ligase
            4-like isoform X2 [Citrus sinensis]
          Length = 1174

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 29/59 (49%), Positives = 38/59 (64%)
 Frame = -1

Query: 328  VDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXXXXXXXXXXXKISYKDVADELLKDW 152
            VD V AMLLDMIPSLG K  +T++P+ ++E              K+SYKD+A +LLKDW
Sbjct: 1116 VDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW 1174


>ref|XP_006453240.1| hypothetical protein CICLE_v10007283mg [Citrus clementina]
            gi|568840651|ref|XP_006474279.1| PREDICTED: DNA ligase
            4-like isoform X3 [Citrus sinensis]
            gi|557556466|gb|ESR66480.1| hypothetical protein
            CICLE_v10007283mg [Citrus clementina]
          Length = 1159

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 29/59 (49%), Positives = 38/59 (64%)
 Frame = -1

Query: 328  VDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXXXXXXXXXXXKISYKDVADELLKDW 152
            VD V AMLLDMIPSLG K  +T++P+ ++E              K+SYKD+A +LLKDW
Sbjct: 1101 VDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW 1159


>ref|XP_006453239.1| hypothetical protein CICLE_v10007283mg [Citrus clementina]
           gi|557556465|gb|ESR66479.1| hypothetical protein
           CICLE_v10007283mg [Citrus clementina]
          Length = 824

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 29/59 (49%), Positives = 38/59 (64%)
 Frame = -1

Query: 328 VDPVHAMLLDMIPSLGTKKVETSHPVLEDEXXXXXXXXXXXXXXKISYKDVADELLKDW 152
           VD V AMLLDMIPSLG K  +T++P+ ++E              K+SYKD+A +LLKDW
Sbjct: 766 VDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW 824


>ref|XP_009359940.1| PREDICTED: DNA ligase 4 [Pyrus x bretschneideri]
          Length = 1163

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 36/86 (41%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = -1

Query: 403  KAHEIELGSGYNAXXXXXXXXXEVMVDPVHAMLLDMIPSLGTKKVETSHPVLEDE--XXX 230
            K  EI++    N          E   DPV AML DMIPSLG KK ET++    DE     
Sbjct: 1078 KIAEIKMKEKQNVQESKKREELESTADPVEAMLFDMIPSLGRKKAETTYTSTRDEKPAPD 1137

Query: 229  XXXXXXXXXXXKISYKDVADELLKDW 152
                       K+SYKD+A ELLKDW
Sbjct: 1138 PIPNAGPSKKKKVSYKDIASELLKDW 1163


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