BLASTX nr result
ID: Cornus23_contig00012641
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00012641
(4138 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1839 0.0
ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1819 0.0
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1818 0.0
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1815 0.0
ref|XP_011081567.1| PREDICTED: RNA-dependent RNA polymerase 6 [S... 1807 0.0
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 1806 0.0
ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1805 0.0
ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1804 0.0
ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [N... 1800 0.0
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 1800 0.0
ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1800 0.0
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1797 0.0
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 1797 0.0
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1796 0.0
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1796 0.0
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 1786 0.0
ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [P... 1777 0.0
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun... 1775 0.0
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca... 1764 0.0
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1755 0.0
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 1839 bits (4763), Expect = 0.0
Identities = 881/1197 (73%), Positives = 1028/1197 (85%), Gaps = 7/1197 (0%)
Frame = -2
Query: 3975 EGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI-NI 3799
EG+ + VVTQVSVGGFD +VTAKD+LEY IGLVWRCRLKTS TPP+SYP FEI +I
Sbjct: 4 EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDI 63
Query: 3798 ASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMSKR 3619
++RT +Y +V PHAFVHFA P SA A++A+G EL L K LKVSLGP+NP +++R
Sbjct: 64 TKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQR 123
Query: 3618 RIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFSLK 3448
R T PFK SDV EIG LVSRDEFFVGWRGP VDFLVDPFDGTCKF F+++TAFSLK
Sbjct: 124 RRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLK 183
Query: 3447 GTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSVPF 3268
T+ H V+KCDFKVEFLVRDIN I Q + +P+V+YRTADDDIE VPF
Sbjct: 184 STSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243
Query: 3267 DLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQA---DCSR 3097
DLLDDDDPWIRTTDFT SG IGRC++YR+SI PRHG KL+KA+ YLKERRVQ + R
Sbjct: 244 DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHR 303
Query: 3096 QQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRN 2917
++++I DEPDFGMPM+DPFFCI +KE + F+++F VNAVMHKGI NQHQLS+ FF+LLRN
Sbjct: 304 RRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 363
Query: 2916 QLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITP 2737
Q EVNV+ALKHIC+YR P F+A R+LK VQEWLLKNP L K+LGD+VE+RRLVITP
Sbjct: 364 QHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITP 423
Query: 2736 TKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNI 2557
TKAYCLPPEVELSNRVLR Y++VADRFLRVTFMDEG+Q +N NVL+YY APIVRDIT N
Sbjct: 424 TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNS 483
Query: 2556 SPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMG 2377
PQKT +FKRV+SIL EGF+LCGRRYSFLAFSANQLRD+SAWFF+E+ ISV+D+ SWMG
Sbjct: 484 FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMG 543
Query: 2376 RFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAME 2197
+F++RN+AKCAARMGQCFSSTYAT+E+P +V+ LPDI+RNGYVFSDGIG+ITP+LA E
Sbjct: 544 KFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLARE 603
Query: 2196 VAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWT 2017
VA +L+L +PPCAYQIRYAGCKGVVACWP K DG+RL+LRPSMNKF S+H LEICSWT
Sbjct: 604 VAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWT 663
Query: 2016 RFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNT 1837
RFQPGFLNRQI+TLLS+L V D +FW+MQE+MVSKLNQM +++DVAF+VLTASCA+QGN
Sbjct: 664 RFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNV 723
Query: 1836 AAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQ 1657
AAIMLSAGFKP EPHLRGMLT +RAAQL DLREK+RIFVPSGRWLMGCLDELG LEQGQ
Sbjct: 724 AAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQ 783
Query: 1656 CFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLH 1477
CFIQVSN SLE CF KHG++FSE E NLQVIKGTV +AKNPCLHPGDVR+LEAVDVPGLH
Sbjct: 784 CFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLH 843
Query: 1476 HLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELP 1297
HL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPS+RSWIPM+Y +AE K L
Sbjct: 844 HLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLA 903
Query: 1296 RPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKT 1117
RPVNH+DII+FF+KN+VN++LGAICNAHVVHADLSE+GA+D+ C+ LA+LAATAVDFPKT
Sbjct: 904 RPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKT 963
Query: 1116 GKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQD 937
GK+V+MP LKPK+YPDFMGKEE+QSYKS+KILG+LYRQIKDA D+D A SEL + P D
Sbjct: 964 GKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGD 1023
Query: 936 IPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKK 757
IPYD++LEV G++D+I+DAW KCSYDGQLNGLL QYKV REEEVVTGHIWSMPKYSS+K
Sbjct: 1024 IPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRK 1083
Query: 756 QGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVK 577
QGELK+RLKH+Y++L+KEFR+ FE+MD + +Q D EKN +YE+KASAWYQV YHP WVK
Sbjct: 1084 QGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVK 1143
Query: 576 KSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
KSLE Q+PDGAG +V LSFAWI ADYLARIKIR RE G++D KP++SL +YLADR+
Sbjct: 1144 KSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200
>ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
Length = 1200
Score = 1819 bits (4711), Expect = 0.0
Identities = 875/1197 (73%), Positives = 1018/1197 (85%), Gaps = 7/1197 (0%)
Frame = -2
Query: 3975 EGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI-NI 3799
EG+ + VVTQVSVGGF +VTAKD+ EY IGLVWRCRLKTS TPP+SYP FEI +I
Sbjct: 4 EGSAKETVVTQVSVGGFGIHVTAKDLSEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDI 63
Query: 3798 ASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMSKR 3619
++RT +Y +V PHAFVHFA P SA A++A+ EL L K LKVSLGP+NP ++++
Sbjct: 64 TKIERTEDYRRVVPHAFVHFALPQSATWAMNASERCELFLNDKALKVSLGPKNPFTLNQQ 123
Query: 3618 RIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFSLK 3448
R T PFK SDV EIG LVS DEFFVGWRGP VDFLVDPFDGTC+F F+++TAFSLK
Sbjct: 124 RRTTTPFKLSDVGFEIGSLVSHDEFFVGWRGPPSGVDFLVDPFDGTCRFCFSRNTAFSLK 183
Query: 3447 GTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSVPF 3268
T+ H V+KC FKVEFLVRDIN I Q + +P+V+YRTADDDIE VPF
Sbjct: 184 STSEHAVIKCAFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243
Query: 3267 DLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRV---QADCSR 3097
DLLDDDDPWIRTTDFT SG IGRC++YR+SI PRHG KL+KA+ YLKERRV Q + R
Sbjct: 244 DLLDDDDPWIRTTDFTGSGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVEVLQEENHR 303
Query: 3096 QQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRN 2917
++++I DEPDFGMPM+DPFFCI +KE + F ++F VNAVMHKGI NQHQLS+ FF+LLRN
Sbjct: 304 RRIRILDEPDFGMPMSDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 363
Query: 2916 QLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITP 2737
Q EVNV+ALKHIC+YR P F+A ++LK VQEWLLKNP L K+LGDIVE+RRLVITP
Sbjct: 364 QHTEVNVSALKHICTYRRPVFNAYKRLKAVQEWLLKNPNLFKNPKQLGDIVEIRRLVITP 423
Query: 2736 TKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNI 2557
TKAYCLPPEVELSNRVLR Y++VADRFLRVTFMDEG+Q +N NVL+YY APIVRDIT N
Sbjct: 424 TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNS 483
Query: 2556 SPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMG 2377
QKT +FKRV+SIL EGF+LCGRRYSFLAFSANQLRD+SAWFFAE+ +SV+DI SWMG
Sbjct: 484 FHQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFAEERNVSVLDIKSWMG 543
Query: 2376 RFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAME 2197
+F++RN+AKCAARMGQCFSSTYAT+E+P +V+ LPDI+RNGYVFSDGIG+ITP+LA E
Sbjct: 544 KFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNFDLPDIERNGYVFSDGIGIITPDLARE 603
Query: 2196 VAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWT 2017
VA +L+L +PPCAYQIRYAGCKGVVACWP K DG+ L+LRPSMNKF S+H LEICSWT
Sbjct: 604 VAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVHLSLRPSMNKFQSNHTTLEICSWT 663
Query: 2016 RFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNT 1837
RFQPGFLNRQI+TLLS+L V D +FW+MQE+MVSKLNQM +++DVAF+VLTASCA+QGN
Sbjct: 664 RFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNV 723
Query: 1836 AAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQ 1657
AAIMLSAGFKPQ EPHLRGMLT +RAAQL LREK+RIFVPSGRWLMGCLDELG LEQGQ
Sbjct: 724 AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGMLEQGQ 783
Query: 1656 CFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLH 1477
CFIQVSN SLE CF KHG++FSE + NLQV+KGTV +AKNPCLHPGDVR+LEAVDVPGLH
Sbjct: 784 CFIQVSNSSLEKCFIKHGAKFSEAKKNLQVVKGTVVIAKNPCLHPGDVRVLEAVDVPGLH 843
Query: 1476 HLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELP 1297
HL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPS+RSWIPM+Y +AE K L
Sbjct: 844 HLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLA 903
Query: 1296 RPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKT 1117
RPVNH+DII+FF+KN+VNE+LGAICNAHVVHADLSEHGA DEKC+ LA+LAATAVDFPKT
Sbjct: 904 RPVNHQDIIEFFAKNMVNENLGAICNAHVVHADLSEHGAMDEKCLTLAELAATAVDFPKT 963
Query: 1116 GKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQD 937
GK+V MP+ LKPK+YPDFMGKEE+QSYKS+KILG+LYRQIKDA D+D A SEL P D
Sbjct: 964 GKVVTMPSYLKPKVYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNPVPGD 1023
Query: 936 IPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKK 757
IPYD++LEV G++D+INDAW KCSYDGQLNGLL QYKV REEE+VTGHIWSMPKYSS+K
Sbjct: 1024 IPYDSDLEVVGASDYINDAWDQKCSYDGQLNGLLSQYKVKREEELVTGHIWSMPKYSSRK 1083
Query: 756 QGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVK 577
QGELK+RLKH+Y++L+KEFR+ FE+MD + +Q D EKN +YE+KASAWYQV YHP WVK
Sbjct: 1084 QGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVAYHPHWVK 1143
Query: 576 KSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
KSLE Q+PDGAG +V LSF WI ADYLARIKIR RE G++D KP++SL +YLADRI
Sbjct: 1144 KSLELQDPDGAGTSVMLSFGWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRI 1200
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
gi|731385864|ref|XP_010648660.1| PREDICTED: RNA-dependent
RNA polymerase 6 [Vitis vinifera]
gi|731385866|ref|XP_010648661.1| PREDICTED: RNA-dependent
RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1818 bits (4708), Expect = 0.0
Identities = 893/1197 (74%), Positives = 1017/1197 (84%), Gaps = 7/1197 (0%)
Frame = -2
Query: 3975 EGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI-NI 3799
EG+E DMVVTQ+S+GGFD+YVTA ++ Y +D IG V RCRLKTSSTPP+SYP FEI +
Sbjct: 4 EGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDT 63
Query: 3798 ASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMSKR 3619
A ++RT +Y+KVEPHAFVHF +P++A ALDAAG SEL L KPLKVSLGP+ P +++R
Sbjct: 64 AKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQR 123
Query: 3618 RIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFSLK 3448
R T PFKF DV +EIG+LVSRDE+F GWRGP VDFLVDPFDGTCKFLFTKDTAFS K
Sbjct: 124 RRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFK 183
Query: 3447 GTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSVPF 3268
G +H V+KC+FKVEFLVR+IN ++Q DM SPFVYYRTADDDIE +VPF
Sbjct: 184 GMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPF 243
Query: 3267 DLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQA--DCSRQ 3094
DLLDDDDPWIRTTDFT SG IGRCN+YRISI PR+G KLKKAM+YL+ RRV D +
Sbjct: 244 DLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKW 303
Query: 3093 QLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRNQ 2914
QL++RDEPDFG+PM+DPFFCIQ+KE + F++MF VNAVMHKGIINQHQLSD+FF+LLR+Q
Sbjct: 304 QLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQ 363
Query: 2913 LEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITPT 2734
+++N+AALKHICSYRHP FDA ++LKLV +WLLKNPKLL KEL DIVEVRRLVITP+
Sbjct: 364 QKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPS 423
Query: 2733 KAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNIS 2554
KAYCLPPEVELSNRVLRNY+EV+DRFLRVTFMDEGMQ +N NVL+YY APIV+ IT N
Sbjct: 424 KAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSF 483
Query: 2553 PQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMGR 2374
PQKT +FKRVK+IL +GF+LCGR+YSFLAFS+NQLRDRSAWFFAED + SV I SWMG+
Sbjct: 484 PQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGK 543
Query: 2373 FSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAMEV 2194
F++RNVAKCAARMGQCFSSTYATVE+P +V +LPDIKRNGY FSDGIG I P+LAMEV
Sbjct: 544 FTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEV 602
Query: 2193 AGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWTR 2014
A +L+L P AYQIRYAGCKGVVACWPS NDGIRL+ RPSMNKF S H ILEICSWTR
Sbjct: 603 AEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTR 661
Query: 2013 FQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNTA 1834
FQPGFLNRQIVTLLS+L V DKIFW+MQESM+SKLNQML DTDVAF+VL ASCAEQGNTA
Sbjct: 662 FQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTA 721
Query: 1833 AIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQC 1654
AIMLSAGFKPQ EPHL+GMLT IRAAQ LREK+RIFVPSGRWLMGCLDELG LEQGQC
Sbjct: 722 AIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQC 781
Query: 1653 FIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLHH 1474
FIQVS+PSLENCF KHGSRFS + NL+VIKG VA+AKNPCLHPGDVRILEAVD PGL H
Sbjct: 782 FIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEH 840
Query: 1473 LFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELPR 1294
L DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPPS++SW PM+Y SAE K L R
Sbjct: 841 LVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAR 900
Query: 1293 PVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKTG 1114
V DIIDFF+KN+VNE+LGAICNAHVVHAD SE+GA DE C+ LA+ AATAVDFPKTG
Sbjct: 901 EVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTG 960
Query: 1113 KIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQDI 934
K+V +P LKPK+YPDFMGKEEFQ+Y+S KILGK+YRQIKDA ++D SE +
Sbjct: 961 KLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKV 1020
Query: 933 PYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKKQ 754
P+D +L +PGS DFINDAW HKCSYDGQLNGLLGQYKV REEEVVTGH+WSMPKY S+KQ
Sbjct: 1021 PFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQ 1080
Query: 753 GELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVKK 574
GEL ERLKHAYS+L+KEFR+ FE+M+SD DQ D+EKN +YE+KASAWYQVTYHPTWVKK
Sbjct: 1081 GELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKK 1140
Query: 573 SLESQEPDGA-GETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
SLE Q PD GE V LSFAWITADYLARIKIRR+ G++D KPI+SL R+L DRI
Sbjct: 1141 SLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 1815 bits (4701), Expect = 0.0
Identities = 879/1198 (73%), Positives = 1013/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
M EG+ + VVTQVS+GGFD +VTAKD+LEY + +IGLVWRCRLKTS TPP+SYP FEI
Sbjct: 1 METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 3804 -NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRM 3628
+I + RT +Y +VEPHAFVHFA P SA A+DAA EL L K LK SLGP+NP +
Sbjct: 61 TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120
Query: 3627 SKRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAF 3457
++RR T PFK S V VEIG LVSRDEFFVGWRGP VDFLVDPFDGTC+F F+++TAF
Sbjct: 121 NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180
Query: 3456 SLKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENS 3277
S K T H V+KCDFKVEFLVRDIN IKQ + +P V+YRTADDDIE S
Sbjct: 181 SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240
Query: 3276 VPFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSR 3097
VPFDLLDDDDPWIRTTDFT SG IGRC++YR+SI PRHG KL+KA+++LKERRVQ + R
Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300
Query: 3096 QQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRN 2917
+ ++IRDEPDFGMPM DPFFCI +KE + F ++F VNAVMHKGI NQHQLS+ FF+LLRN
Sbjct: 301 RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360
Query: 2916 QLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITP 2737
Q EVNVAALKHI YR P FDA +KLK+ QEWLLKNPK K+L DI E+RRLVITP
Sbjct: 361 QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420
Query: 2736 TKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNI 2557
TKAYCLPPEVELSNRVLR Y++VADRFLRVTFMDEG+Q +N N L+Y+ APIVR IT
Sbjct: 421 TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480
Query: 2556 SPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMG 2377
PQKT +FKRV+SIL EGF+LCGRRYSFLAFS+NQLRDRSAWFFAED I+V+ I SWMG
Sbjct: 481 FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540
Query: 2376 RFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAME 2197
+F+++N+AKCAARMGQCFSSTYAT+E+P +V+ LPDIKRNGY FSDGIGMITP+LA E
Sbjct: 541 KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600
Query: 2196 VAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWT 2017
VA +L+ +PPCAYQIRYAGCKGVVACWP + DGIRL+LR SMNKF S+H ILEICSWT
Sbjct: 601 VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660
Query: 2016 RFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNT 1837
RFQPGFLNRQI+TLLS+L V D +FW+MQE MVSKLNQML+D+DVAF+VLTASCAEQGN
Sbjct: 661 RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720
Query: 1836 AAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQ 1657
AAIMLSAGFKPQ EPHLRGMLT +RAAQL LREK+RIFVPSGRWLMGCLDELG LEQGQ
Sbjct: 721 AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780
Query: 1656 CFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLH 1477
CFIQVSN LENCF KHGS+FSET+ NLQV+KGTV +AKNPCLHPGD+RILEAVD PGLH
Sbjct: 781 CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840
Query: 1476 HLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELP 1297
HL+DCLVFPQKG+RPHANEASGSDLDGDLYFVTWDENLIPPS+RSWIPM+Y +AE K+L
Sbjct: 841 HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900
Query: 1296 RPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKT 1117
RPVNH+DI++FF+KN+ NE+LGAICNAHVV ADLSE+GA DEKC+ LA+LAATAVDFPKT
Sbjct: 901 RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960
Query: 1116 GKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVAC-SELTIFPQ 940
GKIV+MP++LKPK+YPDFMGKEE QSYKS+KILG+LYRQIKDA D D+VA SEL
Sbjct: 961 GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRG 1020
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYD +LEV G+TDFI+DAW KCSYDGQLNGLL QYKV REEEVVTGH+WSMPK SS+
Sbjct: 1021 DIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQG+LKERLKH+Y+ L++EFR+ FE+MD D Q D+EKN +YERKASAWYQVTYHP W+
Sbjct: 1081 KQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWI 1140
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+KSLE Q+ DGAG +V LSFAWI ADYLARIKIR IG++D KP++SL +YLADR+
Sbjct: 1141 QKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198
>ref|XP_011081567.1| PREDICTED: RNA-dependent RNA polymerase 6 [Sesamum indicum]
Length = 1205
Score = 1807 bits (4680), Expect = 0.0
Identities = 885/1205 (73%), Positives = 1010/1205 (83%), Gaps = 8/1205 (0%)
Frame = -2
Query: 3996 VRRKMGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYP 3817
++ MG E +ND+VVTQ+SVGG + YVTAK +L+YF+D IGLVWRCRLKTSSTPP+S P
Sbjct: 1 MKNTMGSEIGDNDLVVTQISVGGLENYVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESNP 60
Query: 3816 IFEINIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNP 3637
+EI+ SVQR ++Y K+EPHAFVHFA SAK+ALDAA ELIL +KPLKVSLGPQNP
Sbjct: 61 NYEIDAESVQRKTDYVKIEPHAFVHFAVAHSAKAALDAAARGELILGRKPLKVSLGPQNP 120
Query: 3636 RRMSKRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKD 3466
RM++RR T P+K SDV +EIG++ SRDEF VGWRGP VDFLVDPF+GTCK FT++
Sbjct: 121 YRMNERRRTTTPYKLSDVLIEIGVMRSRDEFLVGWRGPRTGVDFLVDPFNGTCKLHFTRN 180
Query: 3465 TAFSLKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDI 3286
TAFS KG R V+KC+FK+EFL R+IN I Q D SP VYYRTADDDI
Sbjct: 181 TAFSFKGEARSAVIKCNFKIEFLPREINEINQYRDFSSLIVLLQLASSPLVYYRTADDDI 240
Query: 3285 ENSVPFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQA- 3109
E SVPFDLLDDDDPWIRTTDFTPSG IGRCNTYRIS PR+G L KA+ YL++ RV
Sbjct: 241 EESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISARPRNGPSLFKALEYLRKLRVPVL 300
Query: 3108 -DCSRQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFF 2932
+ + L+++DEPDFGMPM+DPFFC+QYKE ++FKIMF VNAVMHKGIINQHQ+S++FF
Sbjct: 301 DESPGRTLRVQDEPDFGMPMSDPFFCLQYKEGISFKIMFLVNAVMHKGIINQHQMSEKFF 360
Query: 2931 NLLRNQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRR 2752
+LLR+Q EE+N+ ALKH+CSY+ P +DA + L VQ+WLL NPKLL R +E+ D+VEVRR
Sbjct: 361 DLLRSQPEELNIVALKHMCSYKRPVYDAIKALDFVQKWLLNNPKLLERPREMDDVVEVRR 420
Query: 2751 LVITPTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRD 2572
L+ITP+KAYCLPPEVELSNRVLRNY+ +ADRFLRVTFMDE MQ LNKNVL YY +PIVRD
Sbjct: 421 LIITPSKAYCLPPEVELSNRVLRNYKNIADRFLRVTFMDEAMQTLNKNVLMYYASPIVRD 480
Query: 2571 ITGNISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDI 2392
IT N +PQ+T MFKRVK IL GF+LCGR+Y+FLAFSANQLRDRSAWFFAED V +I
Sbjct: 481 ITSNSNPQRTNMFKRVKDILVNGFYLCGRKYTFLAFSANQLRDRSAWFFAEDKNTGVANI 540
Query: 2391 ISWMGRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITP 2212
SWMG+F+ RNVAKCAARMGQCFSSTYAT+E+PL+ V+ + PD++RNGYVFSDGIGMI+
Sbjct: 541 KSWMGKFTQRNVAKCAARMGQCFSSTYATIEVPLTKVNSQFPDVERNGYVFSDGIGMISA 600
Query: 2211 ELAMEVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILE 2032
+LA+EVA +LQL +NPPCAYQIRYAG KGVVA WP+K+DG+RL LR SM KF+S+HK LE
Sbjct: 601 DLAIEVAEKLQLGSNPPCAYQIRYAGYKGVVARWPAKDDGVRLYLRRSMKKFESNHKTLE 660
Query: 2031 ICSWTRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCA 1852
ICSWTRFQPGFLNRQIVTLLS+L V+D IFWRMQE+MVS+L+ ML D+D AF+VLTASC
Sbjct: 661 ICSWTRFQPGFLNRQIVTLLSALEVQDDIFWRMQETMVSRLDWMLEDSDTAFDVLTASCT 720
Query: 1851 EQGNTAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKS---RIFVPSGRWLMGCLDE 1681
+QGNTAA+MLSAGF+PQ EPHLRGMLTSIRAAQLGDL E++ RIFVP GRWLMGCLDE
Sbjct: 721 DQGNTAALMLSAGFRPQTEPHLRGMLTSIRAAQLGDLSERATIARIFVPLGRWLMGCLDE 780
Query: 1680 LGKLEQGQCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILE 1501
LGKLE GQCFIQVSNPS+E+CF KHGS+FSET+ LQV+ G VA+AKNPCLHPGDVRILE
Sbjct: 781 LGKLEHGQCFIQVSNPSIEDCFVKHGSQFSETKKKLQVVTGLVAIAKNPCLHPGDVRILE 840
Query: 1500 AVDVPGLHHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYV 1321
AVDVP LHHL+DCLVFPQKGDRPH NEASGSDLDGDLYFVTWDENLIPPS+RSW PMEY
Sbjct: 841 AVDVPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWTPMEYA 900
Query: 1320 SAEVKELPRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAA 1141
EVK+LPR V H DIIDFF+KN+VNESLGAICNAHVVHADLSE+GA DEKCIKLA+LAA
Sbjct: 901 PGEVKQLPREVKHSDIIDFFTKNMVNESLGAICNAHVVHADLSEYGALDEKCIKLAELAA 960
Query: 1140 TAVDFPKTGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACS 961
TAVDFPKTGKIVNMP ELKPK YPDFMGKEEFQSY S KILGKLYR+IKDA D+D A
Sbjct: 961 TAVDFPKTGKIVNMPAELKPKTYPDFMGKEEFQSYNSSKILGKLYRKIKDAYDRDHEASR 1020
Query: 960 ELTIFPQDIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWS 781
E T DI YD +LEV GST FI DAW KCSYDGQL GLLGQYKVNREEEVVTGHIWS
Sbjct: 1021 EHTFASDDIIYDQDLEVTGSTGFIGDAWNCKCSYDGQLIGLLGQYKVNREEEVVTGHIWS 1080
Query: 780 MPKYSSKKQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQV 601
MPKYSSKKQGELKERLKHAYS LRKEFRK FE M + DQ D+EKN MYERKASAWYQV
Sbjct: 1081 MPKYSSKKQGELKERLKHAYSTLRKEFRKVFECMGPEFDQLWDDEKNIMYERKASAWYQV 1140
Query: 600 TYHPTWVKKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRY 421
TY +WVKKS E D AG++V LSFAWI ADYLARIKI+RR + + KPIDSL RY
Sbjct: 1141 TYKDSWVKKSKELHAVDDAGKSVMLSFAWIAADYLARIKIKRRMMENSISTKPIDSLGRY 1200
Query: 420 LADRI 406
LAD+I
Sbjct: 1201 LADKI 1205
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 1806 bits (4679), Expect = 0.0
Identities = 879/1198 (73%), Positives = 1013/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG EG+E D+VVTQ+SVGGFD V AK + EY ++++G VWRCRLK SSTPPDSYP F++
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
+ VQR +YEKV PHAFVHFA+ +SAK AL AAG +ELIL KKPL VSLGP+NP R++
Sbjct: 61 DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR T+PFKFSDV +E+G+LVS+D+F VGWRGP VDFLVDPF+G CK LFTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
+G RH ++KC+FK+EFLVR+IN IK+ D SP V+YRTADDDIE SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQAD--CS 3100
FDLLDDDD WIRTTD T SG IGRCNTYRISI PR+G +KAM Y RV C+
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3099 RQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLR 2920
R+ L++RDEPDFG+ M+DPFFC Q E ++FK+MF VNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2919 NQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVIT 2740
+ EEVN+AALKH+ SY+ P DA +KL +++WLLKNPKLL R EL DIVEVRRLVIT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2739 PTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGN 2560
PTKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NVL+YY A IVR+IT N
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2559 ISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWM 2380
+PQ+T +F+RVKSIL+ GFHLCGR+YSFLAFSANQLRDRSAWFFAEDP+I V IISWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2379 GRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAM 2200
GRFS+RNVAKCAARMGQCFSSTYATVE+P S+V+ +LPDI+RNGYVFSDGIGMI+ +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599
Query: 2199 EVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSW 2020
EVA +L L+ NPP AYQIRYAGCKGVVACWP+KNDGIRL+LRPSM KFDS+H ILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 2019 TRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGN 1840
TRFQPGFLNRQIVTLLSSL V+D IFW MQ+ M+S L++ML+D+DVAF+V+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1839 TAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQG 1660
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K+RIFVPSGRWLMGCLDELG+LEQG
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1659 QCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGL 1480
QCFIQVS+PSLENCF KHG +FS+ + NLQV+KG V +AKNPCLHPGDVRILEAVDVPGL
Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1479 HHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKEL 1300
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS++SWIPM Y AEVK++
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899
Query: 1299 PRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPK 1120
R VNH DIIDFFSKN+V ESLG ICNAHVVHADLSE GA DEKC+KLA+LAA AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1119 TGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQ 940
TGK+V MP +LKPK+YPDFMGKEEFQSYKS+KILGKLYRQ+KD CD + + L + P
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYD+ LE+PGST FI+DAW KCSYDGQL+GLLGQYKVNREEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQGELKERLKHAY+ LRKEFR FE+M+ D D D+EKN MYERKASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+SLE Q PD TV LSFAWI ADYLARIKIR R + D KPI+SL RYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
gi|643724398|gb|KDP33599.1| hypothetical protein
JCGZ_07170 [Jatropha curcas]
Length = 1199
Score = 1805 bits (4675), Expect = 0.0
Identities = 875/1198 (73%), Positives = 1002/1198 (83%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
M + +E D VVTQVS GGFD +V AKD++ Y +++IG VWRCRLKTS TPP+SYP FEI
Sbjct: 1 METQKSEKDTVVTQVSFGGFDNHVKAKDLVAYLEEEIGQVWRCRLKTSWTPPESYPNFEI 60
Query: 3804 -NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRM 3628
+ A++ RT EY++VEPHAFVHFA+ +SA A +AAG EL L +PLKVSLGP+NP +
Sbjct: 61 TDAAAIHRTHEYKRVEPHAFVHFASAESATWAKNAAGHCELFLNDRPLKVSLGPENPFHL 120
Query: 3627 SKRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAF 3457
++RR +PFK SDV +EIG LVSRDEF VGWRGP VDFLVDPFDGTCKF FT DTAF
Sbjct: 121 NQRRRKNIPFKLSDVCIEIGTLVSRDEFLVGWRGPSSGVDFLVDPFDGTCKFCFTMDTAF 180
Query: 3456 SLKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENS 3277
S+K T +H +++CDFK+EFLVRDIN +KQ D +P V+YRTADDDIE S
Sbjct: 181 SIKDTTKHAIIRCDFKLEFLVRDINEVKQYTDTSCIVILLQLASAPLVWYRTADDDIEVS 240
Query: 3276 VPFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSR 3097
VPFDLLDDDDPWIRTTDFTPSG IGRCN YR+SI PRHG KLK+A N+LKERRVQ D R
Sbjct: 241 VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRVSIPPRHGAKLKRARNFLKERRVQEDSLR 300
Query: 3096 QQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRN 2917
+ LKI +EPD+GMPM+DPFFCI +KE + F+IMF VNAVMHKGI NQHQLSD FF+LLRN
Sbjct: 301 RPLKIVNEPDYGMPMSDPFFCIHHKEGIAFEIMFLVNAVMHKGIFNQHQLSDNFFDLLRN 360
Query: 2916 QLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITP 2737
Q ++NVAALKHICSY+ P FDA + LK VQEWLLKNPKL R+K+L DIVE+RRL +TP
Sbjct: 361 QSLDINVAALKHICSYKQPVFDAHKGLKAVQEWLLKNPKLFKRSKQLDDIVEIRRLALTP 420
Query: 2736 TKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNI 2557
T+AYCLPPEVELSNRVLR Y+ +ADRFLRVTFMDEG+Q +N N L+YY APIVRDIT
Sbjct: 421 TRAYCLPPEVELSNRVLRKYKNIADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITSTS 480
Query: 2556 SPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMG 2377
QKT +F+RVKSIL +GF+LCGRRYSFLAFS+NQLRDRSAWFFAED +ISV I WMG
Sbjct: 481 FSQKTRIFRRVKSILTDGFNLCGRRYSFLAFSSNQLRDRSAWFFAEDGKISVGQIRKWMG 540
Query: 2376 RFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAME 2197
RF++RN+AKCAARMGQCFSSTYATVE+P S+V+ LPDI+RNGY+FSDGIG ITP+LA E
Sbjct: 541 RFTNRNIAKCAARMGQCFSSTYATVEVPSSEVNHALPDIERNGYIFSDGIGTITPDLAKE 600
Query: 2196 VAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWT 2017
VA +L+L N PCAYQIRYAGCKGVVACWP++ DGIRL+LRPSMNKF S+H LEICSWT
Sbjct: 601 VAEKLKLDINLPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLEICSWT 660
Query: 2016 RFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNT 1837
RFQPGFLNRQI+TLLS+L V D++FW MQ +MVSKLN+ML D DVAF+V+T SCAEQGNT
Sbjct: 661 RFQPGFLNRQIITLLSTLNVSDEVFWEMQTAMVSKLNKMLTDADVAFDVITKSCAEQGNT 720
Query: 1836 AAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQ 1657
AAIMLSAGFKPQNEPHLRGMLT IRAAQ LREK+RIFV SGRWLMGCLDELG LEQGQ
Sbjct: 721 AAIMLSAGFKPQNEPHLRGMLTCIRAAQFWGLREKARIFVTSGRWLMGCLDELGVLEQGQ 780
Query: 1656 CFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLH 1477
CFIQVSNP LE CF+KHGS+FSET+ NLQVIKGTV +AKNPCLHPGDVRILEAVD PGLH
Sbjct: 781 CFIQVSNPCLETCFSKHGSKFSETKKNLQVIKGTVVIAKNPCLHPGDVRILEAVDAPGLH 840
Query: 1476 HLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELP 1297
HL DCLVFPQKGDRPH NEASGSDLDGDLYFVTWD+NLIPPS++SW PM+Y +AE K L
Sbjct: 841 HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKKSWTPMQYDAAEAKLLN 900
Query: 1296 RPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKT 1117
RPV+H+DIIDFF+KN+VNE+LGAICNAHVVHADLSEHGA DE CIKLA+LAATAVDFPKT
Sbjct: 901 RPVSHQDIIDFFAKNMVNENLGAICNAHVVHADLSEHGALDENCIKLAELAATAVDFPKT 960
Query: 1116 GKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDAC-DKDEVACSELTIFPQ 940
GK+V MP LKPK+YPDFMGKEE+QSYKS KILG+LYRQI DA D D A SEL
Sbjct: 961 GKLVTMPPYLKPKMYPDFMGKEEYQSYKSTKILGRLYRQIIDAYGDDDAAAFSELNCLSG 1020
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYD +LEV GS D+I +AW KCSYDGQL GLLGQYKV REEE+VTGHIWSMP +S+
Sbjct: 1021 DIPYDADLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKREEELVTGHIWSMPMSNSR 1080
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQG+LKERLKH+YSAL+KEFR+ FE M+ D++Q D+EKN YERKASAWYQV YHP W+
Sbjct: 1081 KQGDLKERLKHSYSALKKEFRQVFEGMNLDVEQLTDDEKNLQYERKASAWYQVAYHPKWI 1140
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
KKSLE QE D G LSF+WI ADYLARIKI+RR ID KP++SLV+YL DRI
Sbjct: 1141 KKSLELQESDAPGNATMLSFSWIAADYLARIKIKRRGTEGIDTAKPVNSLVKYLTDRI 1198
>ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
gi|643731347|gb|KDP38635.1| hypothetical protein
JCGZ_03988 [Jatropha curcas]
Length = 1198
Score = 1804 bits (4673), Expect = 0.0
Identities = 876/1198 (73%), Positives = 1006/1198 (83%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG E +E D VVTQVS GGF+ +V AKD++ Y ++ IG VWRCRLKTS TPP+SYP F+I
Sbjct: 1 MGTERSEKDTVVTQVSFGGFENHVNAKDLVAYLEEVIGQVWRCRLKTSWTPPESYPNFKI 60
Query: 3804 -NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRM 3628
+ A + RT+EY++VEPHAFVHFA +SA A +AAG EL L +PLKVSLGP+NP +
Sbjct: 61 TDTAGIHRTNEYKRVEPHAFVHFALAESATWAKNAAGRCELFLNDRPLKVSLGPENPFTL 120
Query: 3627 SKRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAF 3457
++RR T+P K SDV +EIG++VSRDEF VGWRGP VDFLVDPFDGTCKF FT+DTAF
Sbjct: 121 NQRRRKTIPSKLSDVCIEIGMMVSRDEFLVGWRGPPSGVDFLVDPFDGTCKFCFTRDTAF 180
Query: 3456 SLKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENS 3277
S+K TN+H V++CDFK+EFLVRDIN IKQ D +P+V+YRTADDDIE
Sbjct: 181 SIKDTNKHAVIRCDFKLEFLVRDINEIKQYKDTSYLVILLQLASAPWVWYRTADDDIEVL 240
Query: 3276 VPFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSR 3097
VPF+LLDDDDPWIRTTDFTPSG IGRCN+YR+SI PRHG KL++A+NYLKERRVQ D R
Sbjct: 241 VPFNLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLERAINYLKERRVQVDSLR 300
Query: 3096 QQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRN 2917
+ LKI +EPD+GMPM+DPFFCI KE + F+I+F VNAVMHKGI NQHQLSD FF+LLRN
Sbjct: 301 RPLKILNEPDYGMPMSDPFFCIHRKEGIAFEIVFLVNAVMHKGIFNQHQLSDDFFDLLRN 360
Query: 2916 QLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITP 2737
Q ++NVAALKHICSY+ P FDA R+LK VQEWLLKNPKL K+L DIV++RRL ITP
Sbjct: 361 QPADINVAALKHICSYKRPVFDAHRRLKAVQEWLLKNPKLFKCPKQLDDIVQIRRLAITP 420
Query: 2736 TKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNI 2557
T+AYCLPPE+ELSNRVLR Y+ ADRFLRVTFMDEG+Q +N N L+YY APIVRDIT
Sbjct: 421 TRAYCLPPEIELSNRVLRKYKNFADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITSTS 480
Query: 2556 SPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMG 2377
QKT +FKRVKSIL +GF+LCGRRYSFLAFS+NQLRDRSAWFFAED +I V I WMG
Sbjct: 481 FSQKTRIFKRVKSILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDGKIRVDQIRKWMG 540
Query: 2376 RFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAME 2197
+F+++N+AKCAARMGQCFSSTYATVE+P ++V+L PDI+RNGY FSDGIGMITP+LA
Sbjct: 541 KFTNKNIAKCAARMGQCFSSTYATVEVPSAEVNLAHPDIERNGYTFSDGIGMITPDLAKA 600
Query: 2196 VAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWT 2017
VA +L+L NPPCAYQIRYAGCKGVVACWP++ DGIRL+LRPSMNKF S+H LEICSWT
Sbjct: 601 VAEKLKLDINPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLEICSWT 660
Query: 2016 RFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNT 1837
RFQPGFLNRQI+TLLS+L V D+IFW+MQ +MVSKLN+ML D DVAF+V+TASC EQGNT
Sbjct: 661 RFQPGFLNRQIITLLSTLNVSDEIFWKMQIAMVSKLNKMLTDADVAFDVITASCTEQGNT 720
Query: 1836 AAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQ 1657
AA+MLSAGFKPQNEPHLRGMLT IRAAQ DLREK+RIFV SGRWLMGCLDELG LEQGQ
Sbjct: 721 AALMLSAGFKPQNEPHLRGMLTCIRAAQFCDLREKARIFVSSGRWLMGCLDELGVLEQGQ 780
Query: 1656 CFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLH 1477
CFIQVSNPSLE CF+KHGSRFSET+ NLQVI GTV +AKNPCLHPGDVRILEAVD PGL
Sbjct: 781 CFIQVSNPSLETCFSKHGSRFSETKKNLQVITGTVVIAKNPCLHPGDVRILEAVDAPGLC 840
Query: 1476 HLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELP 1297
HL DCLVFPQKGDRPH NEASGSDLDGDLYFVTWDENLIPPS++SW PM+Y +AE K L
Sbjct: 841 HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWTPMQYDAAEPKLLS 900
Query: 1296 RPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKT 1117
RPV+H+DIIDFF+KN+VNESLGAICNAHVV ADLSE+GA DE CIKLA+LAATAVDFPKT
Sbjct: 901 RPVSHQDIIDFFAKNMVNESLGAICNAHVVRADLSEYGALDENCIKLAELAATAVDFPKT 960
Query: 1116 GKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDAC-DKDEVACSELTIFPQ 940
GK+V +P LKPK+YPDFMGKEE+QSYKS KILG+LYR IKDA D D A SEL
Sbjct: 961 GKLVTLPQYLKPKMYPDFMGKEEYQSYKSTKILGRLYRDIKDAYGDDDAAASSELNCSSG 1020
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYDT LEV GS D+I +AW KCSYDGQL GLLGQYKV +EEE+VTGHIWSMP Y+S+
Sbjct: 1021 DIPYDTNLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKKEEELVTGHIWSMPMYNSR 1080
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
K GELKERLKH+YSAL+KEFR+ FE+MD D +Q D+EKN +YERKASAWYQVTYHP W+
Sbjct: 1081 KLGELKERLKHSYSALKKEFRQVFEKMDLDFEQLTDDEKNLLYERKASAWYQVTYHPKWI 1140
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
KKSLE QEPD AG LSFAWI ADYLARIKI+ R +D KP++SLV+YLADRI
Sbjct: 1141 KKSLELQEPDAAGNATILSFAWIAADYLARIKIKHRGTEGVDTAKPVNSLVKYLADRI 1198
>ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana sylvestris]
Length = 1197
Score = 1800 bits (4663), Expect = 0.0
Identities = 875/1198 (73%), Positives = 1012/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG EG+E D+VVTQ+SVGGFD V AK + EY ++++G VWRCRLK S+TPPDSYP ++I
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
+ V R +YEKV PHAFVHFA+ +SAK AL AAG +ELIL KKPL VSLGP+NP R++
Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR T+PF+FSDV VE+G+LVS+D+F VGWRGP VDF VDPF+G C+ LFTKDTAFS
Sbjct: 121 QRRRTTMPFRFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACRILFTKDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
+G RH ++KC+FK+EF+VR+IN IK+ D SP V+YRTADDDIE SV
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQAD--CS 3100
FDLLDDDD WIRTTD T SG IGRCNTYRISI PR+G +KAM Y RV C+
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3099 RQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLR 2920
R+ L++RDEPDFG+ M+DPFFC Q E ++FK+MF VNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2919 NQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVIT 2740
++ EEVN+AALKH+ SY+ P DA +KL +Q+WL+KNPKLL R EL DIVEVRRLVIT
Sbjct: 360 SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLMKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2739 PTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGN 2560
PTKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NVL+YY A IVR+IT N
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2559 ISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWM 2380
+PQ+T +F+RVKSIL+ GFHLCGR+YSFLAFSANQLRDRSAWFFAEDP+I V IISWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2379 GRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAM 2200
GRFS+RNVAKCAARMGQCFSSTYATVE+P +V+ +LPDI+RNGYVFSDGIGMI+ +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2199 EVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSW 2020
EVA +L L+ NPP AYQIRYAGCKGVVACWP+KNDGIRL+LRPSM KFDS+H ILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 2019 TRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGN 1840
TRFQPGFLNRQIVTLLSSL V+D IFW MQ+ M+S L++ML+D+DVAF+V+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1839 TAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQG 1660
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K+RIFVPSGRWLMGCLDELG+LEQG
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1659 QCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGL 1480
QCFIQVS+PSLENCF KHG +FS+ + NLQV+KG V +AKNPCLHPGDVRILEAVDVPGL
Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1479 HHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKEL 1300
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS++SWIPM Y AEVK+L
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1299 PRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPK 1120
R VNH DIIDFFSKN+V ESLG ICNAHVVHADLSE GA DEKC+KLA+LAA AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1119 TGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQ 940
TGK+V MP +LKPK+YPDFMGKEEFQSYKS+KILGKLYRQ+KD CD + + L + P
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYD+ LE+PGST FI+DAW KCSYDGQL+GLLGQYKVNREEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQGELKERLKHAY+ LRKEFR FE+MD D D D+EKN MYERKASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+SLE Q PD TV LSFAWI ADYLARIKIR R + D KPI+SL RYL D+I
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 1800 bits (4663), Expect = 0.0
Identities = 876/1198 (73%), Positives = 1012/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG EG+E ++VVTQ+SVGGFD V AK + EY ++++G VWRCRLK SSTPPDSYP ++I
Sbjct: 1 MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
+ VQR + YEKV PHAFVHFA+ +SAK AL AAG +EL+L KKPL VSLGP+NP R++
Sbjct: 61 DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR T+PFKFSDV VE+G+LVS+ +F VGWRGP VDFLVDPF+GTCK LFTKDT FS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
+G RH ++KC+FK+EFLVR+IN IK+ D SP V+YRTADDDIE SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQAD--CS 3100
FDLLDDDD WIRTTD T SG IGRCNTYRISI PR+G +KAM Y RV C+
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3099 RQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLR 2920
R+ L++RDEPDFG+ M+DPFFC Q E ++FK++F NAV+HKGI+NQHQ+ + FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359
Query: 2919 NQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVIT 2740
+ EEVN+AALKH+ SY+ P DA +KL +Q+WLLKNPKLL R EL DIVEVRRLVIT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2739 PTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGN 2560
PTKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NVL+YY A IVR+IT N
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2559 ISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWM 2380
+PQ+T +F+RVKSIL++GFHLCGR+YSFLAFSANQLRDRSAWFFAEDP+I V IISWM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2379 GRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAM 2200
GRFS+RNVAKCAARMGQCFSSTYATVE+P S+V+ +LPDI+RNGYVFSDGIGMI+ +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2199 EVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSW 2020
EVA +L L+ NPP AYQIRYAGCKGVVACWP+KNDGIRL+LRPSM KFDS+H ILEICSW
Sbjct: 600 EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 2019 TRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGN 1840
TRFQPGFLNRQIVTLLSSL V+D IFW MQ+ M++ L++ML+D+DVAF+V+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1839 TAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQG 1660
TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K+RIFVPSGRWLMGCLDELG+LEQG
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1659 QCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGL 1480
QCFIQVS+PSLENCF KHGS+FS+ + NLQV+KG V +AKNPCLHPGDVRILEAVDVP L
Sbjct: 780 QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1479 HHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKEL 1300
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDEN+IPPS++SWIPM Y AEVK+L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899
Query: 1299 PRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPK 1120
R VNH DIIDFFSKN+V ESLG ICNAHVVHADLSE GA DEKC+KLA+LAA AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1119 TGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQ 940
TGK+V MP +LKPK+YPDFMGKEEFQSYKS+KILGKLYRQ+KD CD + + L + P+
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYDT LE+ GST FI+DAW KCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQGELKERLKHAY+ LRKEFR FE+M+ D D D+EKN MYERKASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+SLE Q PD TV LSFAWI ADYLARIKIR R + D KPI+SL RYLAD+I
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197
>ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
Length = 1195
Score = 1800 bits (4662), Expect = 0.0
Identities = 872/1198 (72%), Positives = 1011/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
M EG+ + VVTQVS+GGFD +VTAKD+LEY + +IGLVWRCRLKTS TPP+SYP FEI
Sbjct: 1 METEGSAKETVVTQVSIGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 3804 -NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRM 3628
++ + RT +Y +VEPHAFVHFA P+SA A+DAA EL L K LK SLGP+NP +
Sbjct: 61 ADLTKITRTEDYRRVEPHAFVHFALPESATWAIDAADRCELFLNNKGLKASLGPENPFTL 120
Query: 3627 SKRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAF 3457
++RR T PFK SDV VEIG LVSRDEFFVGWRGP VDFLVDPFDGTC+F F+++TAF
Sbjct: 121 NQRRRKTTPFKLSDVDVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180
Query: 3456 SLKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENS 3277
S K T H V+KCDFKVEFLVRDIN IKQ + +P+V+YRTADDDIE S
Sbjct: 181 SFKSTAEHAVIKCDFKVEFLVRDINEIKQYKETSCLVLLLQLASAPWVWYRTADDDIEVS 240
Query: 3276 VPFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSR 3097
VPFDLLDDDDPWIRTTDFT SG IGRC++YR+SI PRHG KL+KA+++LKERRVQ + R
Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300
Query: 3096 QQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRN 2917
+ ++IRDEPDFGMPM DPFFCI +KE + F ++F VNAVMHKGI NQHQLS+ FF+LLRN
Sbjct: 301 RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360
Query: 2916 QLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITP 2737
Q EVNVAALKHI YR P FDA +KLK+ QEWLLKNPKL K+L DI E+RRL+ITP
Sbjct: 361 QPTEVNVAALKHIYPYRRPVFDAYKKLKVTQEWLLKNPKLFKNQKKLDDIAEIRRLIITP 420
Query: 2736 TKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNI 2557
TKAYCLPPEVELSNRVLR Y++VADRFLRVTFMDEG+Q +N N L+Y+ APIVR IT
Sbjct: 421 TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGVQTMNSNALNYFAAPIVRAITSYS 480
Query: 2556 SPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMG 2377
PQKT +FKRV+SIL EGF+LCGRRYSFLAFS+NQLRDRSAWFFAED I+V+ I SWMG
Sbjct: 481 FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540
Query: 2376 RFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAME 2197
+F+++N+AKCAARMGQCFSSTYAT+E+P +V+ LPDIKRNGY FSDGIGMITP+LA E
Sbjct: 541 KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600
Query: 2196 VAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWT 2017
VA +L+ +PP AYQIRYAGCKGVVACWP + DGIRL+LR SMNKF S+H ILEICSWT
Sbjct: 601 VAEKLKFDFDPPSAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660
Query: 2016 RFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNT 1837
RFQPGFLNRQI+TLLS+L V D +FW+MQE MVSKLNQML+D+DVAF+VLTASCAE GN
Sbjct: 661 RFQPGFLNRQIITLLSALNVPDAVFWKMQEIMVSKLNQMLVDSDVAFDVLTASCAELGNV 720
Query: 1836 AAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQ 1657
AAIMLSAGFKPQ EPHLRGML +RAAQL LREK+RIFVPSGRWLMGCLDEL LEQGQ
Sbjct: 721 AAIMLSAGFKPQKEPHLRGMLNCVRAAQLWGLREKARIFVPSGRWLMGCLDELAVLEQGQ 780
Query: 1656 CFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLH 1477
CFIQVSN LENCF KHGS+FSET+ NLQV+KGTV +AKNPCLHPGD+RILEAVD PGLH
Sbjct: 781 CFIQVSNSYLENCFVKHGSKFSETKRNLQVVKGTVVIAKNPCLHPGDIRILEAVDDPGLH 840
Query: 1476 HLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELP 1297
HL+DCLVFPQKG+RPHANEASGSDLDGDLYFVTWDENLIPPS+RSWIPM+Y +AE K+L
Sbjct: 841 HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900
Query: 1296 RPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKT 1117
RPVNH+DII+FF+KN+ NE+LGAICNAHVV ADLSE+GA DEKC+ LA+LAATAVDFPKT
Sbjct: 901 RPVNHQDIIEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960
Query: 1116 GKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVAC-SELTIFPQ 940
GKIV+MP++LKPK+YPDFMGKEE QSYKS+KILG+LYRQIKDA D D+VA S+L P
Sbjct: 961 GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSDLNFVPG 1020
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
D+PYD +LEV G+TD+I+DAW KCSYDGQLNGLL QYKV REEEVVTGH+WSMPK SS+
Sbjct: 1021 DVPYDLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSR 1080
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
+QG+LKERLKH+Y+ L++EFR+ FE+MD D Q D+EKN +YERKASAWYQVTYHP W+
Sbjct: 1081 QQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPRWI 1140
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+KSLE Q+ DGA LSFAWI ADYLARIKIR IG++D KPI+SL +YLADR+
Sbjct: 1141 QKSLELQDSDGA---AMLSFAWIAADYLARIKIRHSRIGNVDSAKPINSLAKYLADRM 1195
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1797 bits (4655), Expect = 0.0
Identities = 876/1198 (73%), Positives = 1011/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG EG E ++VVTQ+SVGGFD V AK + EY ++++G VWRCRLK SSTPPDSYP ++I
Sbjct: 1 MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
+ VQR + YEKV PHAFVHFA+ +SAK AL AAG +ELIL KKPL VSLGP+NP R++
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR T+PFKFSDV VE+G+LVS+D+F VGWRGP VDFLVDPF+GTCK LFTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
+G RH ++KC+FK+EFLVR+IN IK+ D SP V+YRTADDDIE SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQAD--CS 3100
FDLLDDDD WIRTTD T SG IGRCNTYRISI PR+G +KAM Y RRV C+
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 3099 RQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLR 2920
R+ L+++DEPDFG+ M+DPFFC Q E ++F+++F VNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359
Query: 2919 NQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVIT 2740
+ EEVN AALKH+ SY+ P DA +KL +Q+WLLKNPKLL R EL DIVEVRRLVIT
Sbjct: 360 SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419
Query: 2739 PTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGN 2560
PTKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NVL+YY A IVR+IT N
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2559 ISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWM 2380
+PQ+T +F+RVKSIL++GFHLCGR+YSFLAFSANQLRDRSAWFFAEDP+I V IISWM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2379 GRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAM 2200
GRFS+RNVAKCAARMGQCFSSTYATVE+P S+V+ +LPDI+RNGYVFSDGIGMI+ +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2199 EVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSW 2020
EVA +L L+ NPP AYQIRYAGCKGVVACWP+KNDGIRL+LRPSM KFDS+H ILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 2019 TRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGN 1840
TRFQPGFLNRQIVTLLSSL V+D IFW MQ+ M+S L++ML+D+DVAF+V+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1839 TAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQG 1660
TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K+RIFVPSGRWLMGCLDELG+LEQG
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1659 QCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGL 1480
QCFIQVS+PSLENCF KHG +FS+ + NLQV+KG V +AKNPCLHPGDVRILEAVDVP L
Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1479 HHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKEL 1300
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS++SWIPM Y AEVK+L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1299 PRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPK 1120
R VNH DIIDFFSKN+V ESLG ICNAHVVHADLSE GA DEKC+KLA+LAA AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1119 TGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQ 940
TGK+V MP +LKPK+YPDFMGKEEFQSYKS+KILGKLYRQ+KD CD + + L + P+
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYDT LE+ GST FI+DAW KCSYDGQLNGLLGQYKVNREEEVVTG+IWSMPKY++K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQGELKERLKHAY+ LRKEFR FE+M+ D D D+EKN MYERKASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+SLE Q D TV LSFAWI ADYLARIKIR R + D KPI+SL RYL D I
Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 1797 bits (4654), Expect = 0.0
Identities = 875/1198 (73%), Positives = 1008/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG EG+E D+VVTQ+SVGGFD V AK + EY ++++G VWRCRLK S+TPPDSYP +++
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
+ A V R +YEKV PHAFVHFA+ +SAK AL AAG + LIL KKPL VSLGP+NP R++
Sbjct: 61 DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR T+PFKFSDV VE+G+LVS+D+F VGWRGP VDF VDPF+G CK LFTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
+G +H ++KC+FK+EF+VR+IN IK+ D SP V+YRTADDDIE SV
Sbjct: 181 FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQAD--CS 3100
FDLLDDDD WIRTTD T SG IGRCNTYRISI PR+G +KAM Y RV C+
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3099 RQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLR 2920
R+ L++RDEPDFG+ M+DPFFC Q E ++FK+MF VNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2919 NQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVIT 2740
+ EEVN+AALKH+ SY+ P DA +KL +Q+WLLKNPKLL R EL DIVEVRRLVIT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2739 PTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGN 2560
PTKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NVL+YY A IVR+IT N
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2559 ISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWM 2380
+PQ+T +F+RVKSIL+ GFHLCGR+YSFLAFSANQLRDRSAWFFAEDP+I V IISWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2379 GRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAM 2200
GRFS+RNVAKCAARMGQCFSSTYATVE+P S+V+ +LPDI+RNGYVFSDGIGMI+ +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599
Query: 2199 EVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSW 2020
EVA +L L+ NPP AYQIRYAGCKGVVACWP+KNDGI L+LRPSM KFDS+H ILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659
Query: 2019 TRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGN 1840
TRFQPGFLNRQIVTLLSSL V+D IFW MQ+ M+S LN+ML+D+DVAF+V+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719
Query: 1839 TAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQG 1660
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K+RIFVPSGRWLMGCLDELG+LEQG
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1659 QCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGL 1480
QCFIQVS+PSLENCF KHG +FS+ + NLQV+KG V +AKNPCLHPGDVRILEAVDVPGL
Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1479 HHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKEL 1300
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS++SWIPM Y AEVK+L
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1299 PRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPK 1120
R VNH DIIDFFSKN+V ESLG ICNAHVVHADLSE GA DEKC+KLA+LAA AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1119 TGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQ 940
TGK+V MP +LKPK+YPDFMGKEEFQSYKS+KILGKLYRQ+KD CD + + L + P
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYD+ LE+PGST F+ DAW KCSYDGQL+GLLGQYKVNREEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQGELKERLKHAY+ LRKEFR FE+MD D D D+EKN MYERKASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+SLE Q PD TV LSFAWI ADYLARI IR R + D KPI+SL RYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1796 bits (4652), Expect = 0.0
Identities = 876/1198 (73%), Positives = 1010/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG EG+E ++VVTQ+S GGFD V AK + EY ++++G VWRCRLK SSTPPDSYP ++I
Sbjct: 1 MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
+ VQR + YEKV PHAFVHFA+ +SAK AL AAG +ELIL KKPL VSLGP+NP R++
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR T+PFKFSDV VE+G+LVS+D+F VGWRGP VDF VDPF+GTCK LFTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
+G RH ++KC+FK+EF+VR+IN IK+ D SP V+YRTADDDIE SV
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQAD--CS 3100
FDLLDDDD WIRTTD T SG IGRCNTYRISI PR+G +KAM Y RV C+
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3099 RQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLR 2920
R+ L+++DEPDFG+ M+DPFFC Q E ++FK+MF VNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2919 NQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVIT 2740
++ EEVN AALKH+ SY+ P DA +KL +Q+WLLKNPKLL R EL DIVEVRRLVIT
Sbjct: 360 SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419
Query: 2739 PTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGN 2560
PTKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NVL+YY A IVR+IT N
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2559 ISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWM 2380
+PQ+T +F+RVKSIL++GFHLCGR+YSFLAFSANQLRDRSAWFFAEDP+I V IISWM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2379 GRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAM 2200
GRFS+RNVAKCAARMGQCFSSTYATVE+P +V+ +LPDI+RNGYVFSDGIGMI+ +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2199 EVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSW 2020
EVA +L L+ NPP AYQIRYAGCKGVVACWP+KNDGIRL+LRPSM KFDS+H ILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 2019 TRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGN 1840
TRFQPGFLNRQIVTLLSSL V+D IFW MQ+ M+S L++ML+D+DVAF+V+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1839 TAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQG 1660
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K+RIFVPSGRWLMGCLDELG+LEQG
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1659 QCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGL 1480
QCFIQVS+PSLENCF KHG +FS+ + NLQV+KG V +AKNPCLHPGDVRILEAVDVP L
Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1479 HHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKEL 1300
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS++SWIPM Y AEVK+L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1299 PRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPK 1120
R VNH DIIDFFSKN+V ESLG ICNAHVVHADLSE GA DEKC+KLA+LAA AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1119 TGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQ 940
TGK+V MP +LKPK+YPDFMGKEEFQSYKS+KILGKLYRQ+KD CD + + L + P+
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYD+ LE+ GST FI+DAW KCSYDGQL+GLLGQYKVNREEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQGELKERLKHAY+ LRKEFR FE+MD D D D+EKN MYERKASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+SLE Q PD TV LSFAWI ADYLARIKIR R + D KPI+SL RYL D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1796 bits (4651), Expect = 0.0
Identities = 877/1198 (73%), Positives = 1011/1198 (84%), Gaps = 5/1198 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
MG EG+E D+VVTQ+SVGGFD V AK + EY ++++G VWRCRLK S+TPPDSYP ++I
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
+ V R +YEKV PHAFVHFA+ +SAK AL AAG +ELIL KKPL VSLGP+NP R++
Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR T+PFKFSDV VE+G+LVS+D+F VGWRGP VDFLVDPF+GTCK LFTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
+G RH ++KC+FK+EFLVR+IN IK+ D SP V+YRTADDDIE SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQAD--CS 3100
FDLLDDDD WIRTTD T SG IGRCNTYRISI PR+G +KAM Y RRV C+
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 3099 RQQLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLR 2920
R+ L+++DEPDFG+ M+DPFFC Q E ++FK+MF VNAV+HKGI+NQHQ+++ FF LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2919 NQLEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVIT 2740
++ EEVN+AALKH+ SY+ P DA +KL +Q+WLLKNPKLL R EL DIVEVRRLVIT
Sbjct: 360 SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2739 PTKAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGN 2560
PTKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NVL+YY A IVR+IT N
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2559 ISPQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWM 2380
+PQ+T +F+RVKSIL+ GFHLCGR+YSFLAFSANQLRDRSAWFFAEDP+I V IISWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2379 GRFSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAM 2200
GRFS+RNVAKCAARMGQCFSSTYATVE+P S+V+ +LPDI+RNGYVFSDGIGMI+ +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2199 EVAGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSW 2020
EVA +L L NPP AYQIRYAG KGVVACWP+KNDGI L+LRPSM KFDS+H ILEICSW
Sbjct: 600 EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659
Query: 2019 TRFQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGN 1840
TRFQPGFLNRQIVTLLSSL V+D IFW MQ+ M+S L++ML+D+DVAF+V+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1839 TAAIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQG 1660
TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K+RIFVPSGRWLMGCLDELG+LEQG
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1659 QCFIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGL 1480
QCFIQVS+PSLENCF KHG +FS+ + NLQV+KG V +AKNPCLHPGDVRILEAVDVP L
Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1479 HHLFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKEL 1300
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS++SWIPM Y AEVK+L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1299 PRPVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPK 1120
R VNH DIIDFFSKN+V ESLG ICNAHVVHADLSE GA DEKC+KLA+LAA AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1119 TGKIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQ 940
TGK+V MP +LKPK+YPDFMGKEEFQSYKS+KILGKLYRQ+KD CD + + L + P+
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 939 DIPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSK 760
DIPYDT L +PGST FI+DAW KCSYDGQL+GLLGQYKVNREEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 759 KQGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWV 580
KQGELKERLKHAY+ LRKEFR FE+MD D D D+EKN MYERKASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 579 KKSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
+SLE Q PD TV LSFAWI ADYLARIKIR R + D KPI+SL RYL D+I
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 1786 bits (4626), Expect = 0.0
Identities = 864/1197 (72%), Positives = 997/1197 (83%), Gaps = 10/1197 (0%)
Frame = -2
Query: 3966 ENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI-NIASV 3790
E + VVTQVS GGFD+ VTA+D++ Y ++IG VWRCRLKTS TPP+SYP FEI + A +
Sbjct: 7 EKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVI 66
Query: 3789 QRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMSKRRID 3610
QR Y +VEPHAFVHFA+PDSA A +AAG EL +P+KVSLGP+NP +++RR
Sbjct: 67 QRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRT 126
Query: 3609 TVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFSLKGTN 3439
T+PFK SDVHVEIG LVSRDEF VGWRGP VDFLVDPFDG CKF FT+DTAFS KGT
Sbjct: 127 TIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTT 186
Query: 3438 RHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSVPFDLL 3259
H V++CDFK+EFLVRDIN IKQ D +P V+YRTADDDIE VPFDLL
Sbjct: 187 EHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLL 246
Query: 3258 DDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSRQQLKIR 3079
DDDDPWIRTTDFTPSG IGRCN+YR+SI PRHG KLK+A+N+L+ERRVQ DC R+ L +
Sbjct: 247 DDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVT 306
Query: 3078 DEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRNQLEEVN 2899
EP++ MPM+DPFFCI ++E V F +MF VNAVMHKGI NQHQLSD FF+LLRNQ +VN
Sbjct: 307 AEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVN 366
Query: 2898 VAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITPTKAYCL 2719
+AAL+HICSY+HP FDA ++LK VQ+WLLKNPKL +K+L DIVE+RRL ITPT+AYCL
Sbjct: 367 IAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCL 426
Query: 2718 PPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNISPQKTT 2539
PPEVELSNRVLR Y+++AD+FLRVTFMDEG+Q +N N L+YY APIVRDIT N QKT
Sbjct: 427 PPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTR 486
Query: 2538 MFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMGRFSDRN 2359
+FKRVKSIL +GF+LCGR+YSFLAFS+NQLRDRSAWFFAED + SV I +WMG+F++RN
Sbjct: 487 IFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRN 546
Query: 2358 VAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAMEVAGRLQ 2179
+AKCAARMGQCFSSTYATVE+P ++ L LPDI+RN Y+FSDGIGMITP+LA EVA +L+
Sbjct: 547 IAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLK 606
Query: 2178 LTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWTRFQPGF 1999
L NPPCAYQIRYAGCKGVVACWP+ DGIRL+LR SMNKF S+H LEICSWTRFQPGF
Sbjct: 607 LEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGF 666
Query: 1998 LNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNTAAIMLS 1819
LNRQI+TLLS+L V D+IFW+MQ MVSKLNQM +D DVAF+V+TASCAEQGNTAAIMLS
Sbjct: 667 LNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLS 726
Query: 1818 AGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQCFIQVS 1639
AGF P+ EPHL GMLT IRAAQL LREK+RIFVPSGRWLMGCLDELG LE GQCFIQVS
Sbjct: 727 AGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVS 786
Query: 1638 NPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLHHLFDCL 1459
NPSLE+CF KHGSRFSE++ LQV+KGTV +AKNPCLHPGD+RILEAVD P LHHL DCL
Sbjct: 787 NPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCL 846
Query: 1458 VFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELPRPVNHK 1279
VFPQKGDRPH NEASGSDLDGDLYFVTWDENLIPPS+RSW+PM+Y +AE K+L RPVNH+
Sbjct: 847 VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQ 906
Query: 1278 DIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKTGKIVNM 1099
DIIDFF+KN+VNE+LGAICNAHVVHADLSE+GA DE CIKLA+LAATAVDFPKTGK+V M
Sbjct: 907 DIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTM 966
Query: 1098 PTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDAC------DKDEVACSELTIFPQD 937
P LKPKLYPDFMGKE++QSY S KILG+LYRQ+KD D D SEL + D
Sbjct: 967 PPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGD 1026
Query: 936 IPYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKK 757
IPYD +LEV GS+D+I DAW KCSYDGQL GLL QYKV REEEVVTGHIWSMPK +S+K
Sbjct: 1027 IPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRK 1086
Query: 756 QGELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVK 577
QGELKERLK +Y +L+KEFR+ FE+MDSD +Q ++EKN +YE+KASAWYQV YHP WV
Sbjct: 1087 QGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVN 1146
Query: 576 KSLESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
KS+E QEPD AG LSFAWI ADYLARIKIR R +D KP++SLV+YLADRI
Sbjct: 1147 KSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203
>ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [Prunus mume]
Length = 1196
Score = 1777 bits (4602), Expect = 0.0
Identities = 859/1197 (71%), Positives = 1002/1197 (83%), Gaps = 4/1197 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
M +EG+EN VVTQVS GGF +V AKD++ Y +D+IG+V+RCRLKTS TPP+S+P FEI
Sbjct: 1 MEFEGSENGSVVTQVSFGGFQHHVRAKDLVTYLEDEIGVVYRCRLKTSWTPPESFPNFEI 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
N A V+RT +Y +VEPHAFVHF +PDS A+DAAG EL L +PLKVS+G +NP ++
Sbjct: 61 NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFLNNEPLKVSMGLENPYFLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR PFK SDVHVEIG LV +DEFFV WRGP VDF+VDPFDGTCKF FT DTAFS
Sbjct: 121 RRRRTKTPFKLSDVHVEIGSLVRQDEFFVSWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
KGT +H V+KCDFKVEFLVR+I IKQ D SP+V YRTADDDI+ SV
Sbjct: 181 FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSRQ 3094
PFDLLDDDDPWIRTTDFTPSG IGRCN+YR+ I PRHG KLKKAMNYL+ERRV+ C +
Sbjct: 241 PFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKW 300
Query: 3093 QLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRNQ 2914
+I+DEPDFGM +PFF IQY+E+++F+IMF VNAVMHKG +NQHQLSD FF+LLR+Q
Sbjct: 301 PPRIQDEPDFGMSNTEPFFSIQYEEDISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ 360
Query: 2913 LEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITPT 2734
+E+NVAALKH+CSYR+P FDAC +LK+VQ+WLLKNPKL+ K L DIVEVRRLVITPT
Sbjct: 361 PKEINVAALKHLCSYRNPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIVEVRRLVITPT 420
Query: 2733 KAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNIS 2554
KAYCLPPEVELSNRVLR Y+EVADRFLRVTFMDEGMQ +N NVL+YY APIV++IT N
Sbjct: 421 KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSF 480
Query: 2553 PQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMGR 2374
QKT +FKR ++ILN+GF+LCGR+Y+FLAFS+NQLRDRSAWFFAE ISV I SWMG+
Sbjct: 481 LQKTNVFKRFRNILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGK 540
Query: 2373 FSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAMEV 2194
F+++NVAKCAARMGQCFSSTYATVE+P S+V+ +PDI+RNGY+FSDGIGMITP+LA+EV
Sbjct: 541 FNNKNVAKCAARMGQCFSSTYATVEVPSSEVN-DIPDIERNGYIFSDGIGMITPDLALEV 599
Query: 2193 AGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWTR 2014
A +L+L NPPCAYQIR+AGCKGVVACWPSK D RL+LR SMNKF+S H LEICSWTR
Sbjct: 600 AEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDRFRLSLRTSMNKFESKHATLEICSWTR 659
Query: 2013 FQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNTA 1834
+QPGFLNRQI+TLLS+L VED+IFWRMQE MV KLNQML+DTDVAF+VLT+SCAEQGN A
Sbjct: 660 YQPGFLNRQIITLLSTLKVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTSSCAEQGNAA 719
Query: 1833 AIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQC 1654
AIMLSAGFKPQ EPHLRGMLT I+AAQL LREK+RIFV SGRWLMG LDELG LEQGQC
Sbjct: 720 AIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQC 779
Query: 1653 FIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLHH 1474
F+QVS PSLE+CFAKHGS F++ E NLQVIKG V +AKNPCLHPGD+RILEAVD PGLHH
Sbjct: 780 FVQVSTPSLESCFAKHGSSFAQIERNLQVIKGYVVIAKNPCLHPGDIRILEAVDAPGLHH 839
Query: 1473 LFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELPR 1294
L+DCLVFPQKGDRPH +EASGSDLDGDLYFVTWDENLIPPS++SW+PM+Y AE K R
Sbjct: 840 LYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKRQGR 899
Query: 1293 PVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKTG 1114
PV +DIIDFF KN+ NE+LG ICNAHVVHAD S++GA DE C+KLA+LAA AVDFPKTG
Sbjct: 900 PVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDENCLKLAELAALAVDFPKTG 959
Query: 1113 KIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQDI 934
KIV +P LKP+LYPDF+GKE+ QSYKS KILG+LYR+++DA D+D SEL P DI
Sbjct: 960 KIVTLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATTSELHYVPSDI 1019
Query: 933 PYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKKQ 754
PYD +LEVPG+ DFI DAW KCSYDGQL GL+GQYKV REEE+VTGH+WS+PK +SKKQ
Sbjct: 1020 PYDMDLEVPGAADFIFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQ 1079
Query: 753 GELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVKK 574
GELKERL H+Y+AL+KEFR+ FE +DS+++ D+EKN + E+KASAWYQVTYHP WVK+
Sbjct: 1080 GELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNILCEKKASAWYQVTYHPKWVKQ 1139
Query: 573 SLESQEPDGAGE-TVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
S QEPDG G+ V LSFAWI ADYLARIKI+ R + ID KPI+SL RYLADRI
Sbjct: 1140 SPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCRGVEHIDSTKPINSLKRYLADRI 1196
>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
gi|462422376|gb|EMJ26639.1| hypothetical protein
PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 1775 bits (4597), Expect = 0.0
Identities = 859/1197 (71%), Positives = 996/1197 (83%), Gaps = 4/1197 (0%)
Frame = -2
Query: 3984 MGWEGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI 3805
M +EG+EN VVTQVS GGF + AKD++ Y +D+IGLV+RCRLKTS TPP+S+P FEI
Sbjct: 1 MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60
Query: 3804 NIASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMS 3625
N A V+RT +Y +VEPHAFVHF +PDS A+DAAG EL +PLKVSLGP+NP ++
Sbjct: 61 NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLN 120
Query: 3624 KRRIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFS 3454
+RR PFK SDVHVEIG LV +DEFF WRGP VDF+VDPFDGTCKF FT DTAFS
Sbjct: 121 RRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180
Query: 3453 LKGTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSV 3274
KGT +H V+KCDFKVEFLVR+I IKQ D SP+V YRTADDDI+ SV
Sbjct: 181 FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSV 240
Query: 3273 PFDLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSRQ 3094
PFDLLDDDDPWIRTTDFTPSG IGRCN+YR+ I PRHG KLKKAMNYL+ERRV+ C +
Sbjct: 241 PFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKW 300
Query: 3093 QLKIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRNQ 2914
KI+DEPDFGM +PFF IQY+E ++F+IMF VNAVMHKG +NQHQLSD FF+LLR+Q
Sbjct: 301 PPKIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQ 360
Query: 2913 LEEVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITPT 2734
+E+NVAALKH+CSYR P FDAC +LK+VQ+WLLKNPKL+ K L DI EVRRLVITPT
Sbjct: 361 PKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPT 420
Query: 2733 KAYCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNIS 2554
KAYCLPPEVELSNRVLR Y+EVADRFLRVTFMDEGMQ +N NVL+YY APIV++IT N
Sbjct: 421 KAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSF 480
Query: 2553 PQKTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMGR 2374
QKT +FKR ++ILN+GF+LCGR+Y+FLAFS+NQLRDRSAWFFAE ISV I SWMG+
Sbjct: 481 LQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGK 540
Query: 2373 FSDRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAMEV 2194
F+++NVAKCAARMGQCFSSTYATVE+ S+V+ +PDIKRNGYVFSDGIGMITP+LA+EV
Sbjct: 541 FNNKNVAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEV 599
Query: 2193 AGRLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWTR 2014
A +L+L NPPCAYQIR+AGCKGVVACWPSK DG RL+LR SMNKF+S H LEICSWTR
Sbjct: 600 AEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTR 659
Query: 2013 FQPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNTA 1834
+QPGFLNRQI+TLLS+L VED+IFWRMQE MV KLNQML+DTDVAF+VLTASCAEQGN A
Sbjct: 660 YQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAA 719
Query: 1833 AIMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQC 1654
AIMLSAGFKPQ EPHLRGMLT I+AAQL LREK+RIFV SGRWLMG LDELG LEQGQC
Sbjct: 720 AIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQC 779
Query: 1653 FIQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLHH 1474
F+QVS P LE+CFAKHGS F++ E NLQVIKG V +AKNPCLHPGD+RILEAVD PGLHH
Sbjct: 780 FVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHH 839
Query: 1473 LFDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELPR 1294
L+DCLVFPQKGDRPH +EASGSDLDGDLYFVTWDENLIPPS++SW+PM+Y AE K R
Sbjct: 840 LYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGR 899
Query: 1293 PVNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKTG 1114
PV +DIIDFF KN+ NE+LG ICNAHVVHAD S++GA D C+KLA+LAA AVDFPKTG
Sbjct: 900 PVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTG 959
Query: 1113 KIVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQDI 934
KIV++P LKP+LYPDF+GKE+ QSYKS KILG+LYR+++DA D+D SEL FP DI
Sbjct: 960 KIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDI 1019
Query: 933 PYDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKKQ 754
PYD +LEVPG+ DF+ DAW KCSYDGQL GL+GQYKV REEE+VTGH+WS+PK +SKKQ
Sbjct: 1020 PYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQ 1079
Query: 753 GELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVKK 574
GELKERL H+Y+AL+KEFR+ FE +DS+++ D+EKN + E+KASAWYQVTYHP WVK+
Sbjct: 1080 GELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQ 1139
Query: 573 SLESQEPDGAGE-TVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
S QEPDG G+ V LSFAWI ADYLARIKI+ + ID KPI+SL RYLADRI
Sbjct: 1140 SPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196
>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
6 [Theobroma cacao]
Length = 1197
Score = 1764 bits (4569), Expect = 0.0
Identities = 855/1194 (71%), Positives = 1000/1194 (83%), Gaps = 4/1194 (0%)
Frame = -2
Query: 3975 EGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEINIA 3796
+G+E D VVTQVSVGGF +V AKD++EYF +++G+VWRCRLKTS TPP+SYP FEI +
Sbjct: 4 QGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDS 63
Query: 3795 SV-QRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMSKR 3619
+V QRT +Y+KVEPHAFVHFA+P +A A+DAAG +EL+ + LKVSLGP+NP +++R
Sbjct: 64 TVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRR 123
Query: 3618 RIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGP---VDFLVDPFDGTCKFLFTKDTAFSLK 3448
R +T PFK SDV ++IG +VSRDEFFVGWRGP VDFLVDPFDGTCKF F++DTAFS K
Sbjct: 124 RRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFK 183
Query: 3447 GTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSVPF 3268
GT + V+KCDFKVEFLVRDIN IKQ + SP V+YRTADD+IE SVPF
Sbjct: 184 GTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPF 243
Query: 3267 DLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSRQQL 3088
DLLDDDD WIRTTDFTPSG IGRCNTYR+ I PRHG KLKKA++YL+E+RV D R L
Sbjct: 244 DLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPL 303
Query: 3087 KIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRNQLE 2908
+I DEPDFG M+DPF+CI YKE + F+IMF VNAVMHKGI NQHQLS+ FFNLLR+Q
Sbjct: 304 RISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPR 363
Query: 2907 EVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITPTKA 2728
EVNVAALKHI SYR P FDA ++LK V +WLL+NP L K+L DIVE+RRLVITPTKA
Sbjct: 364 EVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKA 423
Query: 2727 YCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNISPQ 2548
+CL PEVELSNRVLR Y+EVADRFLRVTFMDEGMQ +N NVL+YY A IVRD+T Q
Sbjct: 424 HCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQ 483
Query: 2547 KTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMGRFS 2368
KT +FKRV+SIL +GF+LCGR+YSFLAFSANQLRD SAWFFAED + SV+ I+ WMG+F+
Sbjct: 484 KTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFT 543
Query: 2367 DRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAMEVAG 2188
+RN+AKCAARMGQCFSSTYATVE+P ++V+ LPDI+RNGYVFSDGIG ITP+LA EVA
Sbjct: 544 NRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQ 603
Query: 2187 RLQLTTNPPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWTRFQ 2008
+L+L NPPCAYQIRYAGCKGVVACWP + DG+RL+LR SMNKF S H LEICSWTRFQ
Sbjct: 604 KLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQ 663
Query: 2007 PGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNTAAI 1828
PGFLNRQI+TLLS+ V D++FW MQ +MVSKLN++L+DTDVAFEVLT+SC+EQGN AAI
Sbjct: 664 PGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAI 723
Query: 1827 MLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQCFI 1648
MLSAGFKPQ EPHLRG+LT +RA+QL LREK+RIFVPSGRWLMG LDELG LEQGQCFI
Sbjct: 724 MLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFI 783
Query: 1647 QVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLHHLF 1468
QVSNPS+ENCF KHGSRF+ET+ N +VI+G V +AKNPCLHPGD+RILEAVD PGLHHL+
Sbjct: 784 QVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLY 843
Query: 1467 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELPRPV 1288
DCLVFPQKG+RPH NEASGSDLDGDLYFVTW++ LIPP ++SW PM+Y E KE+ R V
Sbjct: 844 DCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREV 903
Query: 1287 NHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKTGKI 1108
NHKDIIDFF+KN+VNE LG ICNAHVVHADLSE+GA DEKCI LA+LAATAVDFPKTGKI
Sbjct: 904 NHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKI 963
Query: 1107 VNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQDIPY 928
V+MP LKPKLYPDFMGKEE+QSYKS+KILG+LYR IKD D+D SE+ + DI Y
Sbjct: 964 VSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINY 1023
Query: 927 DTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKKQGE 748
DT+LEV GS D+I+DAW KCSYD QL GLLGQYKV REEEVVTGHIWSMPKY+S+K G+
Sbjct: 1024 DTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGD 1083
Query: 747 LKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVKKSL 568
LKE+L H+Y ALRKEFR+ FE MDS+I+Q ++E+N +YERKASAWYQVTYHP WV+K L
Sbjct: 1084 LKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKL 1143
Query: 567 ESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
E Q+ DGA V LSFAWI ADYLARIKIR + G++D KP++SLV+YLAD+I
Sbjct: 1144 ELQKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 1755 bits (4546), Expect = 0.0
Identities = 863/1195 (72%), Positives = 997/1195 (83%), Gaps = 5/1195 (0%)
Frame = -2
Query: 3975 EGAENDMVVTQVSVGGFDEYVTAKDVLEYFQDKIGLVWRCRLKTSSTPPDSYPIFEI-NI 3799
EG E +V QVS GGFD V A ++++Y ++++G VWRCRLKTS TP +SYP F + N
Sbjct: 4 EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNT 63
Query: 3798 ASVQRTSEYEKVEPHAFVHFATPDSAKSALDAAGCSELILFKKPLKVSLGPQNPRRMSKR 3619
A V++T +YEKVEPHAFVHFA P A+DAAG +EL L + LKVSLGP+NP R+++R
Sbjct: 64 AEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQR 123
Query: 3618 RIDTVPFKFSDVHVEIGLLVSRDEFFVGWRGPV---DFLVDPFDGTCKFLFTKDTAFSLK 3448
+ PFK DV VEIG LVSRDEFFV WRGP DFLVDPFDGTCKF FT+D AF+LK
Sbjct: 124 GRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALK 183
Query: 3447 GTNRHVVMKCDFKVEFLVRDINVIKQIADMXXXXXXXXXXXSPFVYYRTADDDIENSVPF 3268
+ H V+KC+FKVEFLVR+IN++KQ ++ SP V+YRTADDDI VPF
Sbjct: 184 SSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243
Query: 3267 DLLDDDDPWIRTTDFTPSGVIGRCNTYRISISPRHGLKLKKAMNYLKERRVQADCSRQQL 3088
D+LDDDDPWIRTTDFTPSG IGRCN+YRISIS RH KL K + YL ERRVQ D + +
Sbjct: 244 DMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI 303
Query: 3087 KIRDEPDFGMPMADPFFCIQYKENVTFKIMFFVNAVMHKGIINQHQLSDRFFNLLRNQLE 2908
IR+EPDF +PM+DPFFCI Y+E ++F+IMF VNAVMHKGIINQHQLSD FF+LLR Q
Sbjct: 304 TIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR 363
Query: 2907 EVNVAALKHICSYRHPRFDACRKLKLVQEWLLKNPKLLLRAKELGDIVEVRRLVITPTKA 2728
EVNVAALKHI SY+ P FDAC++LKLVQEWLLK+P+L K++ DIVEVRRLVITPTKA
Sbjct: 364 EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKA 423
Query: 2727 YCLPPEVELSNRVLRNYREVADRFLRVTFMDEGMQPLNKNVLSYYTAPIVRDITGNISPQ 2548
YCLPPEVELSNRVLR Y+++ADRFLRVTFMDEG+Q +N NVLSY+ APIVRDIT N Q
Sbjct: 424 YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483
Query: 2547 KTTMFKRVKSILNEGFHLCGRRYSFLAFSANQLRDRSAWFFAEDPRISVVDIISWMGRFS 2368
KT +FKRV+SIL+ GF+LCGR++SFLAFS++QLRD SAWFF+ED + SV+DI WMGRF+
Sbjct: 484 KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543
Query: 2367 DRNVAKCAARMGQCFSSTYATVEIPLSDVDLKLPDIKRNGYVFSDGIGMITPELAMEVAG 2188
D+N+AKCAARMGQCFSSTYATVE+P ++VD +LPDIKRNGYVFSDGIG ITP+LAMEVA
Sbjct: 544 DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603
Query: 2187 RLQLTTN-PPCAYQIRYAGCKGVVACWPSKNDGIRLALRPSMNKFDSHHKILEICSWTRF 2011
+L+L N PPCAYQIRYAGCKGVVACWP+K DGIR++LR SMNKF SHH LEICSWTRF
Sbjct: 604 KLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRF 663
Query: 2010 QPGFLNRQIVTLLSSLGVEDKIFWRMQESMVSKLNQMLLDTDVAFEVLTASCAEQGNTAA 1831
QPGFLNRQI+TLLS+L V D++FW MQ+SM+SKLNQML+D+DVAFEVLTA+CAEQGNTAA
Sbjct: 664 QPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAA 723
Query: 1830 IMLSAGFKPQNEPHLRGMLTSIRAAQLGDLREKSRIFVPSGRWLMGCLDELGKLEQGQCF 1651
IMLSAGF PQ EPHLRGMLT IRAAQL LREK+RIFVP+GRWLMGCLDELG LE GQCF
Sbjct: 724 IMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCF 783
Query: 1650 IQVSNPSLENCFAKHGSRFSETENNLQVIKGTVAMAKNPCLHPGDVRILEAVDVPGLHHL 1471
IQVS P L NCF+KHGSRF+ET+ LQVIKG V +AKNPCLHPGD+RILEAVD P LHHL
Sbjct: 784 IQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHL 842
Query: 1470 FDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYVSAEVKELPRP 1291
+DCLVFPQKGDRPH NEASGSDLDGDLYFVTWDENLIPPS++SW PMEY +AE K L RP
Sbjct: 843 YDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRP 902
Query: 1290 VNHKDIIDFFSKNIVNESLGAICNAHVVHADLSEHGASDEKCIKLADLAATAVDFPKTGK 1111
V+ +DII+FF+K++VNE+LG ICNAHVVHAD SE+GA DE CI LA+LAATAVDFPKTGK
Sbjct: 903 VDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGK 962
Query: 1110 IVNMPTELKPKLYPDFMGKEEFQSYKSQKILGKLYRQIKDACDKDEVACSELTIFPQDIP 931
IV MP LKPKLYPDFMGKE +QSYKS KILG+LYRQ KDA D+D SE+ I P DI
Sbjct: 963 IVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIH 1022
Query: 930 YDTELEVPGSTDFINDAWTHKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSKKQG 751
YDT+LEVP S DFI DAW KCSYDGQLNGLL QYKVNREEE+VTGHIWSMPKY+S+KQG
Sbjct: 1023 YDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQG 1082
Query: 750 ELKERLKHAYSALRKEFRKFFEQMDSDIDQPIDEEKNAMYERKASAWYQVTYHPTWVKKS 571
ELKERLKH+YSALRKEFR+ FE+MDSD + ++EKNA++ERKASAWYQVTYHP WVKKS
Sbjct: 1083 ELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKS 1142
Query: 570 LESQEPDGAGETVRLSFAWITADYLARIKIRRREIGSIDHIKPIDSLVRYLADRI 406
L+ QE D A V LSFAWI DYLARIKIR RE+ +ID KP++ L RY+ADRI
Sbjct: 1143 LDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197