BLASTX nr result

ID: Cornus23_contig00012480 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00012480
         (542 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006342186.1| PREDICTED: AT-rich interactive domain-contai...    64   4e-08
ref|XP_004238465.1| PREDICTED: AT-rich interactive domain-contai...    58   3e-06

>ref|XP_006342186.1| PREDICTED: AT-rich interactive domain-containing protein 5-like
           [Solanum tuberosum]
          Length = 604

 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 30/200 (15%)
 Frame = -3

Query: 510 EDREKQGSSLAVDGQDSENNLVDATV-EPEIEESPRSEGDQNANGRGE-----EEKQPCE 349
           +D   Q  S AV           AT+ +PE + +   +   NA G  E     EEK+  +
Sbjct: 94  DDTMNQNDSKAVVEDQRNAASETATIGQPETQGNTAVDDQNNATGGTEGETIIEEKKEGD 153

Query: 348 NEAE----DQNPNENVAEHQNISENRQLPLEMPGNE----------GHQRES-------- 235
            +A+     + P  NVA H     N Q+  E+P NE           HQ E+        
Sbjct: 154 PDADVALKKEEPIGNVAHHDTRGVNMQVHEELPANEVGDSGKEVKEAHQAENSIKDVHQN 213

Query: 234 --EGLVDVQGELDHKTSPASAAVDGDAGLSEVPDSKNDCDGTYVENQRELTTMNSIVKCS 61
             + +VD Q +++HKT+ AS   D D   +E+ ++K+D   T +    E  T N  VKC 
Sbjct: 214 GIDMMVDEQKKVEHKTNTASVISDRDDRSNELSETKDDVKNTAIAKMPEPATPNLSVKCD 273

Query: 60  NAKAQDDTSETPKNWVHEKK 1
            A     T E       E K
Sbjct: 274 TANTGQHTGEASNKIFDESK 293


>ref|XP_004238465.1| PREDICTED: AT-rich interactive domain-containing protein 5 [Solanum
           lycopersicum]
          Length = 568

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 52/200 (26%), Positives = 77/200 (38%), Gaps = 29/200 (14%)
 Frame = -3

Query: 513 MEDREKQGSSLAVDGQ---------DSENNLVDATVEPEIEESPRSEGDQNANGRGEEEK 361
           +ED +   +  A  GQ         D +NN    T E E     + EGD +A+   ++E+
Sbjct: 70  VEDHKNAATETATIGQPETQGNTALDDQNNATGGT-EGETTIQDKKEGDPDADVALKKEE 128

Query: 360 QPCENEAEDQNPNENVAEHQNISENRQLPLEMPGNEG--------------------HQR 241
                      P  NVA H     N Q+  E+P NE                     HQ 
Sbjct: 129 -----------PIGNVARHDTTGVNMQVLEELPTNEVGDSGKEVKEAHQAENSIKDVHQN 177

Query: 240 ESEGLVDVQGELDHKTSPASAAVDGDAGLSEVPDSKNDCDGTYVENQRELTTMNSIVKCS 61
            ++ +VD Q +++HK + AS   D D   +E+ ++K+    T +    E  T N  VKC 
Sbjct: 178 GNDMMVDEQKKVEHKANTASVISDRDDRSNELSETKDAVKNTAIAKMPEPATPNLSVKCD 237

Query: 60  NAKAQDDTSETPKNWVHEKK 1
            A     T E       E K
Sbjct: 238 TANTGQHTGEASNKIFDESK 257


Top