BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00012024
         (1981 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   712   0.0  
ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   699   0.0  
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   688   0.0  
ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,...   686   0.0  
ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,...   683   0.0  
ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,...   680   0.0  
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   675   0.0  
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   672   0.0  
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   667   0.0  
gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium r...   666   0.0  
emb|CDP05091.1| unnamed protein product [Coffea canephora]            664   0.0  
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   663   0.0  
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   662   0.0  
ref|XP_010097858.1| RNA polymerase sigma factor rpoD [Morus nota...   662   0.0  
ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,...   662   0.0  
ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,...   660   0.0  
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     659   0.0  
ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,...   657   0.0  
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   657   0.0  
ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,...   655   0.0  

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  712 bits (1837), Expect = 0.0
 Identities = 373/517 (72%), Positives = 426/517 (82%), Gaps = 3/517 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSAS--RTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIK 1634
            MGVVTVSSSAS  RTP GL+ +F ++Q PL+RPL+LAFK DK KN ALVTPHEPI LPI+
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 1633 RPKDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEE 1454
              KD++KRL  A KPS++V AVSTDE SP ++ELDYNEAAAKLENIYKLSP + VS+ E+
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 1453 INXXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVAS 1277
            +            ++   ++KAE               + LSL++R+ L K K+++ VAS
Sbjct: 121  LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS 180

Query: 1276 IQKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALL 1097
            IQK+  +++EDE I+ LVREYSASTDLVSLDWKKMKIPPVLP SEHAWLFKLMQPMK LL
Sbjct: 181  IQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLL 240

Query: 1096 EVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYF 917
            EVK+NLQ+ LGREPTDGE+A+A  M+ VQVR++MEVG+AARNKLIKHNLRL+LFVINKYF
Sbjct: 241  EVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYF 300

Query: 916  QEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVS 737
            QEFANGPKFQDLCQAGVKGLIT IDRFEPKR FRLSTY LFWIRHAI+RSMT SSFTRVS
Sbjct: 301  QEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVS 360

Query: 736  FGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAI 557
            FGLESVR EIQRAKLELLF+LQRLPTEEEIIE+VGISP RYHEVMRASK V SL+ARHA 
Sbjct: 361  FGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHAT 420

Query: 556  TQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 377
            TQEE+I+GITDV  VGG++ RQ A            LKPKESLV+RQRYGLDGKGDRTLG
Sbjct: 421  TQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLG 480

Query: 376  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            EIAGNL+ISREMVRKHEVKALMKLKHPARVDYLR+YI
Sbjct: 481  EIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYI 517


>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  699 bits (1803), Expect = 0.0
 Identities = 365/514 (71%), Positives = 416/514 (80%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSS+S+TPLGLS+RF  +Q  LKRPLILAFKTDK K+ ALVT HEPI LP+  P
Sbjct: 1    MGVVTVSSSSSQTPLGLSSRFSVHQTQLKRPLILAFKTDKAKDRALVTHHEPIPLPMDTP 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K+NQKRL  A KPS++V  V +DE S  T+E+DYN+ AAKLE+IYKLSP + VSD ++ +
Sbjct: 61   KENQKRLRRATKPSKRVKVVCSDEASSCTIEMDYNDVAAKLESIYKLSPPTDVSDVDDTD 120

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXRLSLDERVELRKCKEDEVVASIQK 1268
                       K+GE + K                 RLSLD R+ LR+ KE+  V     
Sbjct: 121  RVGRRRRRTRKKLGEADRKTGKESSDNVIRNHNKNKRLSLDRRIALRRKKEEGAVQLSGV 180

Query: 1267 RELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLEVK 1088
            +E ++ ED  +++LV EYS STDL SLDWKKMKIPPVLPSSEHAWLFKLMQPM AL ++K
Sbjct: 181  KEGSK-EDGDVDKLVGEYSVSTDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMNALFQMK 239

Query: 1087 ENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQEF 908
            ENL + LGREPTDGE+AD+T M+V QVR+ +EVGRAARN+LIKHNLRL+LFVINKYFQEF
Sbjct: 240  ENLHRDLGREPTDGELADSTNMSVFQVRRCIEVGRAARNRLIKHNLRLVLFVINKYFQEF 299

Query: 907  ANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSFGL 728
            ANGPKFQDLCQAGVKGLIT IDRFEPKRRFRLSTY LFWIRHAI+RSMT SSFTRVSFGL
Sbjct: 300  ANGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGL 359

Query: 727  ESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAITQE 548
            ESVR EIQRAKLEL+FEL+RLPTEEEII++VGISP RYHEV++ASKPVFSL++RHAITQE
Sbjct: 360  ESVRVEIQRAKLELMFELERLPTEEEIIKKVGISPERYHEVIKASKPVFSLHSRHAITQE 419

Query: 547  EFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIA 368
            EFI+GITD+  VGG+KRRQPA            LKPKESLVIRQRYGLDGKGDRTLGEIA
Sbjct: 420  EFINGITDIEGVGGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 479

Query: 367  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            GNLNISREMVRKHEVKALMKLKHP RVDYLRRYI
Sbjct: 480  GNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 513


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  688 bits (1775), Expect = 0.0
 Identities = 357/516 (69%), Positives = 417/516 (80%), Gaps = 1/516 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVV+VSSSA+RTPLGLST+F + +   +RPL +AFK DK+ NTALVTP E I LPI+  
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K++ KR G AKK  + VN V TD+ SP TLE+DYNEAAAKLENIYKLSP +  SD EE+ 
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVASIQ 1271
                       +  E +EK  N              + LSLD R+ L+K +E++ V S++
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 1270 KRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLEV 1091
            +++ +E+E E+I+RLVR+YSASTDLVSLDW+KMKIPPVLPS EH WLFKLMQPMKALL+ 
Sbjct: 181  RKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQA 240

Query: 1090 KENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQE 911
            KENLQ+ LGR+PT+ E+A+AT M+  QVRK++EVG+AARNKLIKHNLRL+LF INKYFQ+
Sbjct: 241  KENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQD 300

Query: 910  FANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSFG 731
            FANGP+FQDLCQAGVKGLIT IDRFEP+RRFRLSTY LFWIRHAIIRSMT SSFTRVSFG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 730  LESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAITQ 551
            LESVR EIQRAKLELLFEL R PTEEEII++VGISP RY EVMRASKPV SL++RH++TQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQ 420

Query: 550  EEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEI 371
            EEFI+GITD+  VGG+ RRQPA            LKPKESLVIRQRYGLDGKGDRTLGEI
Sbjct: 421  EEFINGITDIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 370  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            AGNLNISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 481  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 519

 Score =  686 bits (1770), Expect = 0.0
 Identities = 366/518 (70%), Positives = 419/518 (80%), Gaps = 4/518 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSSASR+PLGLST F ++  PLKRP++++FK DKTK T LV P E ISLPI+  
Sbjct: 1    MGVVTVSSSASRSPLGLSTSFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTD-ETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTE-E 1454
            K+N+KR     K +E+V+AVS D E SPSTLELDY+EAAAKLE+IYK S  +  SDTE +
Sbjct: 61   KENEKRSRRVSKRTERVHAVSIDIEASPSTLELDYSEAAAKLESIYKRSLETDSSDTEAK 120

Query: 1453 INXXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVAS 1277
             +           +I EG E+A+               + L+LD+R+ L K KE E+VAS
Sbjct: 121  DHQIVKRRQRTRKRIIEGNEEAKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVAS 180

Query: 1276 IQKRELTED-EDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAL 1100
             QKREL ED EDE+I++LVREYS +TDL SLDWKKMKIPPVLPSSEHAWLFKLMQPMKA+
Sbjct: 181  SQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAI 240

Query: 1099 LEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKY 920
            L+VKENLQ  LGREPTD EVA+AT ++  ++RKN+EVGRAARNKLIKHNLRL+LFVINKY
Sbjct: 241  LQVKENLQNDLGREPTDAEVAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 919  FQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRV 740
            FQ+FANGPKFQDLCQAGVKGLIT IDRFEP R+FRLSTY LFWIRHAIIRSMTTSSFT+V
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKV 360

Query: 739  SFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHA 560
             FGLES+R EIQ+AKL+LLFELQR+PT+EEIIERV +SP RYHEVM+ SKPVFSL+ARH 
Sbjct: 361  PFGLESIRVEIQKAKLQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHM 420

Query: 559  ITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 380
             TQEEFI+GITDV  V G KR+QPA            LKPKESLVIRQRYGLDGKG+RTL
Sbjct: 421  TTQEEFINGITDVDGVDGVKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTL 480

Query: 379  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRYI
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 518


>ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
          Length = 519

 Score =  683 bits (1763), Expect = 0.0
 Identities = 364/518 (70%), Positives = 417/518 (80%), Gaps = 4/518 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSSASR+PLGLSTRF ++  PLKRP++++FK DKTK T LV P E ISLPI+  
Sbjct: 1    MGVVTVSSSASRSPLGLSTRFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTD-ETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTE-E 1454
            K+N+KR     K +E+V+AVS D E S S LELDY+EAAAKLE+IYK S  +  SDTE +
Sbjct: 61   KENEKRSRRVSKRTERVHAVSIDIEASTSPLELDYSEAAAKLESIYKRSLETDSSDTEAK 120

Query: 1453 INXXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVAS 1277
             +           +I EG+E+ +               + L+LD+R+ L K KE E+VAS
Sbjct: 121  DHQIVKRRQRTRKRIVEGDEETKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVAS 180

Query: 1276 IQKRELTED-EDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAL 1100
             QKREL ED EDE+I++LVREYS +TDL SLDWKKMKIPPVLPSSEHAWLFKLMQPMKA+
Sbjct: 181  SQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAI 240

Query: 1099 LEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKY 920
            L+VKENLQ  LGREPTD E A+AT ++  ++RKN+EVGRAARNKLIKHNLRL+LFVINKY
Sbjct: 241  LQVKENLQNDLGREPTDAEAAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 919  FQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRV 740
            FQ+FANGPKFQDLCQAGVKGLIT IDRFEP R+FRLSTY LFWIRHAIIRSMTTSSFT+V
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKV 360

Query: 739  SFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHA 560
             FGLES+R EIQ+AKL+LLFELQR+PT+EEIIERV +SP RYHEVM+ SKPVFSL+ARH 
Sbjct: 361  PFGLESIRVEIQKAKLQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHM 420

Query: 559  ITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 380
             TQEE I+GITDV  V G+KRRQPA            LKPKESLVIRQRYGLDGKGDRTL
Sbjct: 421  TTQEELINGITDVDGVDGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 379  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYLRRYI
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 518


>ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Sesamum indicum]
          Length = 518

 Score =  680 bits (1754), Expect = 0.0
 Identities = 357/516 (69%), Positives = 415/516 (80%), Gaps = 2/516 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSSA+RTPLGL  R+L+  +  +R +IL+FK DK KN AL+ P E ++LP++  
Sbjct: 1    MGVVTVSSSAARTPLGLDARYLTRVSLCRRQVILSFKNDKNKNIALIAPRESVALPLEAK 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K+ +KR    KK  E+V+AVSTDE SPST++LDYNEAAAKLE IYK SP + VS  E  +
Sbjct: 61   KEKEKRSRKVKKLVERVSAVSTDEASPSTIDLDYNEAAAKLEYIYKRSPATTVSLEEVKD 120

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXRLSLDERVELRKCKE-DEVVASIQ 1271
                       + GE EE  +               RL+L++R+ L+  KE D + +S Q
Sbjct: 121  QRVKRRRPLRKRTGEAEEAEKKTADDVVRSKRKKERRLTLEKRIALKTNKEVDFLASSSQ 180

Query: 1270 KRELTE-DEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLE 1094
            KR+  + DEDE+I+RLVR+YSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKA+L+
Sbjct: 181  KRKQRKNDEDEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQ 240

Query: 1093 VKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQ 914
            VKENLQ  LGRE TD E+A+ATK N VQ+RK +EVGRAARNKLIKHNLRL+LFV+NKYFQ
Sbjct: 241  VKENLQNDLGREVTDDELAEATKTNAVQLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 300

Query: 913  EFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSF 734
            +F+NGP+FQDLCQAGVKGLIT IDRFEPKR+FRLSTY LFWIRHAIIRSMT SSFT+VSF
Sbjct: 301  DFSNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYSLFWIRHAIIRSMTLSSFTKVSF 360

Query: 733  GLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAIT 554
            GLESVR EIQ+AKLELLFELQRLP++EEI+ RVGISP RYHEVMR SKP+ SL+ARHA+T
Sbjct: 361  GLESVRVEIQKAKLELLFELQRLPSDEEIVNRVGISPERYHEVMRVSKPISSLHARHAVT 420

Query: 553  QEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGE 374
            QEEFI+GI+DV  V G+KRRQPA            LKPKESLVIRQRYGLDGKGDRTLGE
Sbjct: 421  QEEFINGISDVDDVEGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 480

Query: 373  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            IAGNLNISREMVRKHEVKALMKLKHPAR+DYLRRYI
Sbjct: 481  IAGNLNISREMVRKHEVKALMKLKHPARIDYLRRYI 516


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  675 bits (1741), Expect = 0.0
 Identities = 358/519 (68%), Positives = 420/519 (80%), Gaps = 4/519 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSSASRTPLGLST+    ++ L++PLI+AFKTD+   TALV P E I LPI+  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSP-TSYVSDTEEI 1451
            K +QKRLG A+K ++ V + +TD  SP TLE+DYNEAAAKLEN+YK SP T   SD E++
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 1450 NXXXXXXXXXXXKIGEGE-EKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVAS 1277
            +           K  E + +K EN              + LSL++RV L+  K+++V++S
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 1276 I-QKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAL 1100
            I +KR+  ++E+E+I  LVREYS STDLVSLDWKKMKIPPVL SSEHAWLFKLMQPMK L
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1099 LEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKY 920
            LEVKENLQ+ LGREPT+GE+A+AT M+VVQV+K++EVGRAAR+KLIKHNLRL+LFV+NKY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 919  FQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRV 740
            FQ+FANGPKFQDLCQAGVKGLIT IDRFEPKR FRLSTY LFWIRHAIIRSMT SSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 360

Query: 739  SFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHA 560
            SFGLESVR EIQ+AKL +LF L+R+PTE+EIIE+VGISP RYHEVMRASKPVFSL++RH 
Sbjct: 361  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 420

Query: 559  ITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 380
             TQEEFI+GITDV  V G+ R++PA            LKPKESLVIRQRYGLDGKGDRTL
Sbjct: 421  TTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 379  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 519


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  672 bits (1735), Expect = 0.0
 Identities = 356/516 (68%), Positives = 415/516 (80%), Gaps = 2/516 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSSASR+PLGLS+RF +   PLKRP+I++FK DKTKNT L+ P E ISL I+  
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETS 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K+N+KR     K SE+V+AV+  E SPSTLELDY+EAAAKLE+IYK S  +  S+TE  +
Sbjct: 61   KENEKRSRRVSKRSERVHAVAI-EASPSTLELDYSEAAAKLESIYKRSLETASSNTEVQD 119

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVASIQ 1271
                       +I EG+E+A+               + L+LD+R+ L K KE E+VAS +
Sbjct: 120  HLVKRRPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASSE 179

Query: 1270 KRELTED-EDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLE 1094
            +R+L ED EDE+I++LVREYS +TDL SLDWKKMKIPPVLPSSEH WLFKLMQPMKA+L+
Sbjct: 180  RRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQ 239

Query: 1093 VKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQ 914
            VKENLQ  LGREPTDGEVA+AT M+  ++RK +EVGRAARNKLIKHNLRL+LFV+NKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 913  EFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSF 734
            +FANG +FQDLCQAGVKGLIT IDRFEP R+FRLSTY LFWIRHAIIRSMTTSSFT+V F
Sbjct: 300  DFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPF 359

Query: 733  GLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAIT 554
            GLES+R EIQ+AKLELLFELQR+PT+EEII RVG+SP RYHEVM+ SKPV SL+AR+  T
Sbjct: 360  GLESIRVEIQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTT 419

Query: 553  QEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGE 374
            QEE I+GITDV  V G+KR+QPA            LKPKESLVIRQRYGLDGKGDRTLGE
Sbjct: 420  QEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 479

Query: 373  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            IAGNLNISREMVRKHEVKALMKLKHP RVDY+RRYI
Sbjct: 480  IAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYI 515


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  667 bits (1722), Expect = 0.0
 Identities = 349/516 (67%), Positives = 409/516 (79%), Gaps = 1/516 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVV+VSSSA+RTP+GL T+F + +   +RP I+AFK DK+ NTALVT  +   LP++  
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIMAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K++ KR G AKK S+ VN   TDE SP T+++DYNEAAAKLENIYKLSP++   D +   
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVASIQ 1271
                       +  E + KA+N              R L LD+R+EL+K +E++ V S Q
Sbjct: 121  GETKGRHLRRKRSTESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1270 KRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLEV 1091
             ++   +E E+I+RLVR+YSASTDLVSLDWKKMKIPPVLPS+EH WLFKLMQPMKALLE 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 1090 KENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQE 911
            KENLQ+ LGR+PT+ E+A+AT  +  QVR+ +EVGRAARNKLIKHNLRL+LFVINKYFQ+
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFQD 300

Query: 910  FANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSFG 731
            FANGP+FQDLCQAGVKGLIT IDRFEP+RRFRLSTY LFWIRHAIIRSMT SSFTRVSFG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 730  LESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAITQ 551
            LESVR EIQRAKLELLFEL R PT++E+I+RVGISP RY EVMRASKPV SL+ RH++TQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 550  EEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEI 371
            EEFISGITDV  VGG+ RRQPA            LKPKESLVIRQRYGLDGKGDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 370  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            +GNLNISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 481  SGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  666 bits (1719), Expect = 0.0
 Identities = 350/524 (66%), Positives = 411/524 (78%), Gaps = 1/524 (0%)
 Frame = -1

Query: 1831 NFPIGQLGMGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEP 1652
            NF   Q  MGVV+VSSSA+RTP+GL T+F + +   +RP I+AFK DK+ NTALVT  + 
Sbjct: 24   NFAKRQFEMGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDH 83

Query: 1651 ISLPIKRPKDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSY 1472
              LP++  K++ KR G AKK S+ VN   TDE SP T+++DYNEAAAKLENIYKLSP++ 
Sbjct: 84   NLLPVETAKEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQ 143

Query: 1471 VSDTEEINXXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKE 1295
              D +              +  E + KA+N              R L LD+R+EL+K +E
Sbjct: 144  TFDEKGSEGETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNRE 203

Query: 1294 DEVVASIQKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQ 1115
            ++ V S Q ++   +E E+I+RLVR+YSASTDLVSLDWKKMK+PPVLPS+EH WLFKLMQ
Sbjct: 204  EKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQ 263

Query: 1114 PMKALLEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILF 935
            PMKALLE KENLQ+ LGR+PT+ E+A+AT  +  QVR+ +EVGRAARNKLIKHNLRL+LF
Sbjct: 264  PMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLF 323

Query: 934  VINKYFQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTS 755
            VI KYFQ+FANGP+FQDLCQAGVKGLIT IDRFEP+RRFRLSTY LFWIRHAIIRSMT S
Sbjct: 324  VIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLS 383

Query: 754  SFTRVSFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSL 575
            SFTRVSFGLESVR EIQRAKLELLFEL R PT++E+I+RVGISP RY EVMRASKPV SL
Sbjct: 384  SFTRVSFGLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASL 443

Query: 574  NARHAITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGK 395
            + RH++TQEEFISGITDV  VGG+ RRQPA            LKPKESLVIRQRYGLDGK
Sbjct: 444  HLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGK 503

Query: 394  GDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            GDRTLGEIAGNL+ISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 504  GDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 547


>emb|CDP05091.1| unnamed protein product [Coffea canephora]
          Length = 530

 Score =  664 bits (1712), Expect = 0.0
 Identities = 351/529 (66%), Positives = 408/529 (77%), Gaps = 15/529 (2%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSSA+R+PLGL+ +  +  +  +RP ++ FK  KTKN ALV P E +SLP++  
Sbjct: 1    MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLVPFKNGKTKNAALVAPRESLSLPVEGS 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
              N+KRL    K  E+V AVS  E + STLELDYNEAAAKLENIYKLSP + VSD E  +
Sbjct: 61   NVNEKRLKRVVKRPERVKAVSALEAASSTLELDYNEAAAKLENIYKLSPATKVSDMEVND 120

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVASIQ 1271
                       ++ E   +AE               + LSLD+RV LRK ++ E ++S Q
Sbjct: 121  LGMKRDQQRRKRMKEANVEAEKGTNYTVVRSPRKKSKRLSLDKRVTLRKKRDSEAISSSQ 180

Query: 1270 KRELTE--------------DEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAW 1133
            KR+ +E              DEDE+INRL+REYS STD  SLDWKKMKIPPVLPSSEH+W
Sbjct: 181  KRKSSEGDEDEEINRKSSEDDEDEKINRLLREYSGSTDFTSLDWKKMKIPPVLPSSEHSW 240

Query: 1132 LFKLMQPMKALLEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHN 953
            LFKLMQPMKA+++VKENL   LGREPTDGE+A+AT ++V+ +RK+++VG+AARNKLIKHN
Sbjct: 241  LFKLMQPMKAIIQVKENLPNDLGREPTDGELAEATNLDVLHLRKDIKVGQAARNKLIKHN 300

Query: 952  LRLILFVINKYFQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAII 773
            LRL+LFV+NKYFQ+F NGPKFQDLCQAGVKGLIT IDRFEPKR+FRLSTY LFWIRHAII
Sbjct: 301  LRLVLFVMNKYFQDFTNGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAII 360

Query: 772  RSMTTSSFTRVSFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRAS 593
            RSMT SS T+VSFGL+SVR EIQRAKLELLFELQR+PTE+EIIERVGISP RYHEVMR S
Sbjct: 361  RSMTLSSLTKVSFGLDSVRIEIQRAKLELLFELQRMPTEDEIIERVGISPERYHEVMRVS 420

Query: 592  KPVFSLNARHAITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQR 413
             P+ SL+ARH+ TQEEFI+GITDV  V G KRRQPA            LKPKESLVIRQR
Sbjct: 421  NPILSLHARHSATQEEFINGITDVDGVEGEKRRQPALLRLALDDVLDSLKPKESLVIRQR 480

Query: 412  YGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            YGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 481  YGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 529


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            gi|823214552|ref|XP_012440030.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Gossypium raimondii] gi|763785552|gb|KJB52623.1|
            hypothetical protein B456_008G270500 [Gossypium
            raimondii] gi|763785553|gb|KJB52624.1| hypothetical
            protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  663 bits (1710), Expect = 0.0
 Identities = 347/516 (67%), Positives = 408/516 (79%), Gaps = 1/516 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVV+VSSSA+RTP+GL T+F + +   +RP I+AFK DK+ NTALVT  +   LP++  
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K++ KR G AKK S+ VN   TDE SP T+++DYNEAAAKLENIYKLSP++   D +   
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVASIQ 1271
                       +  E + KA+N              R L LD+R+EL+K +E++ V S Q
Sbjct: 121  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1270 KRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLEV 1091
             ++   +E E+I+RLVR+YSASTDLVSLDWKKMK+PPVLPS+EH WLFKLMQPMKALLE 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 1090 KENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQE 911
            KENLQ+ LGR+PT+ E+A+AT  +  QVR+ +EVGRAARNKLIKHNLRL+LFVI KYFQ+
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQD 300

Query: 910  FANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSFG 731
            FANGP+FQDLCQAGVKGLIT IDRFEP+RRFRLSTY LFWIRHAIIRSMT SSFTRVSFG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 730  LESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAITQ 551
            LESVR EIQRAKLELLFEL R PT++E+I+RVGISP RY EVMRASKPV SL+ RH++TQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 550  EEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEI 371
            EEFISGITDV  VGG+ RRQPA            LKPKESLVIRQRYGLDGKGDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 370  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            AGNL+ISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 481  AGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  662 bits (1708), Expect = 0.0
 Identities = 355/520 (68%), Positives = 408/520 (78%), Gaps = 5/520 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQ-APLKRPLILAFKTDKTKNTALVTPHEPISLPIKR 1631
            MGVVTVSSS SRTPLGLST  +S Q + L++PLI+AF+TDK+   ALV P E + LPI+ 
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 1630 PKDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEI 1451
             K  QKRLG A+K  + V A   +E     LELDYNEAAAKLEN+YK SP +  SD E +
Sbjct: 61   GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVENV 120

Query: 1450 NXXXXXXXXXXXK-IGEGEEKAENXXXXXXXXXXXXXXR--LSLDERVELRKCKEDEVVA 1280
            +           K I E ++K E                  LSLD+RV L+  K+++V A
Sbjct: 121  DGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAA 180

Query: 1279 SI-QKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKA 1103
            S+ +KR+    E+E +  LVREYSASTDLVSLDWKKM+IPPVL SSEH WLFKLMQPMK 
Sbjct: 181  SVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKG 240

Query: 1102 LLEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINK 923
            LLEVKE LQ+ LGREP  GE+A+AT M VVQV++++EVGRAARNKLIKHNLRL+LFVINK
Sbjct: 241  LLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINK 300

Query: 922  YFQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTR 743
            YFQ+FANGPKFQDLCQAGVKGLIT IDRFEP+RRFRLSTY LFWIRHAIIRSMT SSFTR
Sbjct: 301  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTR 360

Query: 742  VSFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARH 563
            VSFGLESVR EIQ+AKLE+L +L+R+PTE+EIIE+VGISP RYHEVMRASKPVFSLN+RH
Sbjct: 361  VSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRH 420

Query: 562  AITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 383
            ++TQEEFI+GITDV  V G+ RR+PA            LKPKESLVIRQRYGLDGKGDRT
Sbjct: 421  SVTQEEFINGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRT 480

Query: 382  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI+
Sbjct: 481  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 520


>ref|XP_010097858.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587883538|gb|EXB72455.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 517

 Score =  662 bits (1707), Expect = 0.0
 Identities = 353/521 (67%), Positives = 413/521 (79%), Gaps = 6/521 (1%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAP-LKRPLILAFKTDKTKNTALVTPHEPISLPIKR 1631
            MGVVTVSSSASRTPLGLS +F S ++  LK+PLI+AFK DK+  T LV P + I LP++ 
Sbjct: 1    MGVVTVSSSASRTPLGLSLKFSSNRSSVLKKPLIVAFKGDKSNKTVLVAPQDQIILPVET 60

Query: 1630 PKDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEE- 1454
             K+ + R+G AKK S +V AV+TDE S ST+E+DYNEAAAKLENI+KLS     +D E+ 
Sbjct: 61   RKEVKSRVGKAKKSSNRVKAVATDEASTSTMEVDYNEAAAKLENIFKLSS----ADVEDA 116

Query: 1453 INXXXXXXXXXXXKIGEGEEKA---ENXXXXXXXXXXXXXXRLSLDERVELRKCKEDEV- 1286
            +             IGE +E+A                   RLSL +RVEL++ KE+ V 
Sbjct: 117  VGLTSRGRRRRSKVIGESDERAGKKSTTSDTVVRNRKKKAKRLSLHKRVELKRDKEENVA 176

Query: 1285 VASIQKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMK 1106
            V  ++KR  + +E+E+I +LVREYSASTDLVSLDWKKMKIPPVLPSSEH WLFKLMQP+K
Sbjct: 177  VVLVRKRRESLNEEEKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLK 236

Query: 1105 ALLEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVIN 926
             L +V E+LQ+ LGREPT+ E+A+AT ++VVQV++++E GRAARNKLIKHNLRL+LFV+N
Sbjct: 237  QLFQVGEDLQKTLGREPTENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMN 296

Query: 925  KYFQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFT 746
            KYFQ+F NGPKFQDLCQAGV+GLIT IDRFEPKRRFRLSTY LFWIRHAIIRSMT SSFT
Sbjct: 297  KYFQDFTNGPKFQDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFT 356

Query: 745  RVSFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNAR 566
            RVSFGLESVR EIQ+AK+EL FEL+RLPTEEEIIE+VGISP RYHEVMRASKPV SLN+R
Sbjct: 357  RVSFGLESVRAEIQKAKIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSR 416

Query: 565  HAITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 386
            H  TQEEFI+ ITDV  V G+ RR+PA            LKPKESLVIRQRYGLDGKGDR
Sbjct: 417  HVTTQEEFINAITDVDGVDGDDRRKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDR 476

Query: 385  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 477  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYMV 517


>ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  662 bits (1707), Expect = 0.0
 Identities = 349/519 (67%), Positives = 412/519 (79%), Gaps = 4/519 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVS+SA+RTPLGLST+  S ++P ++P I+AFKTD++  TALV P   I LPI+  
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSP-STLELDYNEAAAKLENIYKLSPTSYVS-DTEE 1454
            K +QKR+G A+K ++ V + +TD  +P +TLE+DYNEAAAKLEN+YK SP      D E+
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1453 INXXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR--LSLDERVELRKCKEDEVVA 1280
             +           K  E + + E                  L+LD+RV L+  K+++VV+
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 1279 SIQKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAL 1100
            S+QKR+  ++E E+I  LVREYSASTDLVSLDWKKMKIPPVL SSEHAWLFKLMQPMK L
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1099 LEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKY 920
             EV+E LQ+ LG EPT+GE+A+AT M+VVQV+K+ EVGRAARNKLIKHNLRL+LFVINKY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 919  FQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRV 740
            FQ+FANGPKFQDLCQAGV+GLIT IDRFEPKR FRLSTY LFWIRHAIIRSMT SSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 739  SFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHA 560
            SFGLESVR EIQ+AKLE++F L+R+PT+EEIIE+VGISP RYHEVMRASKPV SL++RHA
Sbjct: 361  SFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 559  ITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 380
             TQEE+I+GITDV  V G+ RR+PA            LKPKESLVIRQRYGLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 379  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI+
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  660 bits (1702), Expect = 0.0
 Identities = 349/519 (67%), Positives = 411/519 (79%), Gaps = 4/519 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVS+SA+RTPLGLST+  S ++P ++P I+AFKTD++  TALV P   I LPI+  
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGNIPLPIETR 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSP-STLELDYNEAAAKLENIYKLSPTSYVS-DTEE 1454
            K  QKR+G A+K ++ V + +TD  +P +TLE+DYNEAAAKLEN+YK SP      D E+
Sbjct: 61   KKLQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1453 INXXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR--LSLDERVELRKCKEDEVVA 1280
             +           K  E + + E                  L+LD+RV L+  K+++VV+
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 1279 SIQKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAL 1100
            S+QKR+  ++E E+I  LVREYSASTDLVSLDWKKMKIPPVL SSEHAWLFKLMQPMK L
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1099 LEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKY 920
             EV+E LQ+ LG EPT+GE+A+AT M+VVQV+K+ EVGRAARNKLIKHNLRL+LFVINKY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 919  FQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRV 740
            FQ+FANGPKFQDLCQAGV+GLIT IDRFEPKR FRLSTY LFWIRHAIIRSMT SSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 739  SFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHA 560
            SFGLESVR EIQ+AKLE++F L+R+PT+EEIIE+VGISP RYHEVMRASKPV SL++RHA
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 559  ITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 380
             TQEE+I+GITDV  V G+ RR+PA            LKPKESLVIRQRYGLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 379  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI+
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  659 bits (1699), Expect = 0.0
 Identities = 348/515 (67%), Positives = 405/515 (78%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSS +R+PLGLST+F +++  LKRP I++ K DKT N ALV P E I LPI+ P
Sbjct: 1    MGVVTVSSSPARSPLGLSTKFSTHRCTLKRPSIVSLKADKTNNIALVAPQEQIPLPIQTP 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K  +KRLG A K S++V AVSTD TSP TLELD+NEAAAKLENIYKLSP +  SDTE+I+
Sbjct: 61   KKQRKRLGRAIKTSKRVKAVSTDVTSPCTLELDFNEAAAKLENIYKLSPPTDCSDTEDID 120

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXRLSLDERVELRKCKEDEVVASIQK 1268
                          +  EK  +               LSLD R+ L + KE +  +S + 
Sbjct: 121  GMKSRHRKRMNGGDDTGEKRTSDNVVRNRTKKVKR--LSLDRRISLIRNKEGDADSSSRS 178

Query: 1267 RELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLEVK 1088
            +   ++E+  ++ LVREYSASTDLVSLDWKKMKIPPVL S EHAWLFKLMQPMK LL++K
Sbjct: 179  KIDQKNENYSVDWLVREYSASTDLVSLDWKKMKIPPVLSSLEHAWLFKLMQPMKELLQLK 238

Query: 1087 ENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQEF 908
            ENL +   REPTD E+A+A  MNV+++RK+M+VGRAARNKLIKHNLRL+LFV+NKYFQ+F
Sbjct: 239  ENLHKDFSREPTDYELAEALNMNVIEMRKDMDVGRAARNKLIKHNLRLVLFVMNKYFQDF 298

Query: 907  ANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSFGL 728
            ANGP+FQDLCQAGVKGLIT IDRFEPKRR RLSTY LFWIRHAI RS+T SSFTRVSFGL
Sbjct: 299  ANGPRFQDLCQAGVKGLITAIDRFEPKRRVRLSTYGLFWIRHAITRSLTLSSFTRVSFGL 358

Query: 727  ESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAITQE 548
            ESVR EIQRAKLELLFEL RLPTE+EIIE+VGIS  RYHEVMRA+KPV+SL+A+H IT E
Sbjct: 359  ESVRVEIQRAKLELLFELHRLPTEDEIIEKVGISFERYHEVMRAAKPVYSLHAKHMITHE 418

Query: 547  EFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIA 368
            EFI+ +TDV  + G++RRQPA            LKPKESLVIRQRYGLDGKGDRTLGEIA
Sbjct: 419  EFINALTDVDGIHGDQRRQPALFRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 478

Query: 367  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            GNLNISREMVRKHEVKALMKLKHPARVDYLRRY++
Sbjct: 479  GNLNISREMVRKHEVKALMKLKHPARVDYLRRYLV 513


>ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Malus domestica]
          Length = 519

 Score =  657 bits (1695), Expect = 0.0
 Identities = 348/519 (67%), Positives = 412/519 (79%), Gaps = 4/519 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVS+SA+RTPLGLS +  S ++  ++PLI+AFKTD++  TALV P   I LPI+  
Sbjct: 1    MGVVTVSTSAARTPLGLSAKSTSQRSTFRKPLIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSP-STLELDYNEAAAKLENIYKLSPTSYVS-DTEE 1454
            K +QKR+G A+K ++ V + +TD  +P +TLE+DYNEAAAKLEN+YK SP      D E+
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1453 INXXXXXXXXXXXKIGEG--EEKAENXXXXXXXXXXXXXXRLSLDERVELRKCKEDEVVA 1280
             +           K  E   E++ +               RL+LD+RV L+  K+++VV+
Sbjct: 121  ADGLMRRGRKRRKKTSESNHEKEEKRTSDIVVRSKTKKAKRLNLDKRVSLKWNKDEKVVS 180

Query: 1279 SIQKRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAL 1100
            S+QKR+  ++E E+I  LVREYSASTDLVSLDWKKMKIPPVL SSEHAWLFKLMQPMK L
Sbjct: 181  SVQKRKDQKNEMEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1099 LEVKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKY 920
             E +E LQ+ LG EPT+GE+A+AT M+VVQV+K+ EVGRAARNKLIKHNLRL+LFVINKY
Sbjct: 241  HEAREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 919  FQEFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRV 740
            FQ+FANGPKFQDLCQAGV+GLIT IDRFEPKR FRLSTY LFWIRHAIIRSMT SSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 739  SFGLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHA 560
            SFGLESVR EIQ+AKLE++F L+R+PT+EEIIE+VGISP RYHEVMRASKPV SL++RHA
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRIPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 559  ITQEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 380
             TQEE+I+GITDV  V G+ RR+PA            LKPKESLVIRQRYGLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 379  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI+
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            lycopersicum]
          Length = 516

 Score =  657 bits (1695), Expect = 0.0
 Identities = 347/516 (67%), Positives = 410/516 (79%), Gaps = 2/516 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVVTVSSSASR+PLGLS+RF +   PLKRP+I++FK D TKNT LV+P E IS PI+  
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K+N+KR     K +E+V+AV T E  PSTLELDY+EAAAKLE+IYK S  +   +TE  +
Sbjct: 61   KENEKRSRRVSKRTERVHAV-TIEAPPSTLELDYSEAAAKLESIYKRSLETASPNTEVKD 119

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVASIQ 1271
                       +I E +E+A+               + L+LD+R+ L K KE +++AS +
Sbjct: 120  HLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSE 179

Query: 1270 KRELTED-EDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLE 1094
            +R+L ED EDE+I++LVREYS +TDL SLDWKKMKIPPVLPSSEH WLFKLMQPMKA+L+
Sbjct: 180  RRKLNEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQ 239

Query: 1093 VKENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQ 914
            VKENLQ  LGREPTDGEVA+AT M+  ++RK +E GRAARNKLIKHNLRL+LFV+NKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 913  EFANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSF 734
            +FAN  +FQDLCQAGVKGLIT IDRFEP R+FRLSTY LFWIRHAIIR MTTSSFT+V F
Sbjct: 300  DFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPF 359

Query: 733  GLESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAIT 554
            GLES+R EIQ+AKLELLFELQR+PT++EII+RVG SP RYHEVM+ SKP+FSL+AR+  T
Sbjct: 360  GLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTT 419

Query: 553  QEEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGE 374
            QEE I+GITDV  V G+KR+QPA            LKPKESLVIRQRYGLDGKGDRTLGE
Sbjct: 420  QEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 479

Query: 373  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 266
            IAGNLNISREMVRKHEVKALMKLKHP RVDY+RRYI
Sbjct: 480  IAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYI 515


>ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Populus euphratica]
          Length = 512

 Score =  655 bits (1691), Expect = 0.0
 Identities = 352/516 (68%), Positives = 407/516 (78%), Gaps = 1/516 (0%)
 Frame = -1

Query: 1807 MGVVTVSSSASRTPLGLSTRFLSYQAPLKRPLILAFKTDKTKNTALVTPHEPISLPIKRP 1628
            MGVV+VSSSASRTPLGLST+F +Y +  KRPLI+AFK DK+ N + V PHE I LPI+  
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSSNPSFVAPHEQIPLPIETT 60

Query: 1627 KDNQKRLGSAKKPSEKVNAVSTDETSPSTLELDYNEAAAKLENIYKLSPTSYVSDTEEIN 1448
            K  +KRLG +KK S ++ AV T E SP TL +DYNEAAAKLENIYKLSP +  SD E+ +
Sbjct: 61   K-GKKRLGKSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 1447 XXXXXXXXXXXKIGEGEEKAENXXXXXXXXXXXXXXR-LSLDERVELRKCKEDEVVASIQ 1271
                       KI EG+++AE+              + LSL++R+ LR   E+++V S  
Sbjct: 119  GVIRRGRQRKRKISEGDKEAEDRTSKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVTSAG 178

Query: 1270 KRELTEDEDERINRLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLEV 1091
            KR+  ++E+E+I+ L+REYSASTDLVSLDWKKMKIPPVL SSEH WLFKLMQPMKALL+V
Sbjct: 179  KRKDRKNENEKIDELLREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQV 238

Query: 1090 KENLQQGLGREPTDGEVADATKMNVVQVRKNMEVGRAARNKLIKHNLRLILFVINKYFQE 911
            KE+LQ+ LGREPTD E+A AT M+V+QVRK + VGRAARNKLIKHNLRL+LFVI KYFQ+
Sbjct: 239  KEHLQENLGREPTDVELAKATTMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQD 298

Query: 910  FANGPKFQDLCQAGVKGLITGIDRFEPKRRFRLSTYVLFWIRHAIIRSMTTSSFTRVSFG 731
            FANG KFQDLCQAGVKGLIT IDRFEPKRRFRLSTY LFWIRHAIIRSMT SSFTRVSFG
Sbjct: 299  FANGTKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 358

Query: 730  LESVRGEIQRAKLELLFELQRLPTEEEIIERVGISPARYHEVMRASKPVFSLNARHAITQ 551
            LES+R EIQ+AKLEL F+L+R P E+EIIE+V ISP RYHEV RASKPV SL++RH  TQ
Sbjct: 359  LESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQ 418

Query: 550  EEFISGITDVASVGGNKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEI 371
            EEFI GI DV   GG+ RRQ A            LKPKESLV+RQRYGLDGKGDRTLGEI
Sbjct: 419  EEFIGGIADVD--GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEI 476

Query: 370  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIL 263
            AGNLNISREMVRKHEVKALMKLKHP RVDYLRRY++
Sbjct: 477  AGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512