BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00010703
         (3105 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron sp...   967   0.0  
emb|CBI27903.3| unnamed protein product [Vitis vinifera]              935   0.0  
ref|XP_010242233.1| PREDICTED: chloroplastic group IIA intron sp...   887   0.0  
emb|CDP03154.1| unnamed protein product [Coffea canephora]            884   0.0  
ref|XP_011093738.1| PREDICTED: chloroplastic group IIA intron sp...   883   0.0  
ref|XP_007012812.1| CRS1 / YhbY domain-containing protein, putat...   878   0.0  
ref|XP_009352661.1| PREDICTED: chloroplastic group IIA intron sp...   874   0.0  
ref|XP_008360480.1| PREDICTED: chloroplastic group IIA intron sp...   869   0.0  
ref|XP_007203795.1| hypothetical protein PRUPE_ppa001111mg [Prun...   867   0.0  
ref|XP_007012815.1| CRS1 / YhbY domain-containing protein, putat...   864   0.0  
ref|XP_007012816.1| CRS1 / YhbY domain-containing protein, putat...   864   0.0  
ref|XP_009799178.1| PREDICTED: chloroplastic group IIA intron sp...   860   0.0  
ref|XP_008242355.1| PREDICTED: chloroplastic group IIA intron sp...   858   0.0  
ref|XP_009602353.1| PREDICTED: chloroplastic group IIA intron sp...   855   0.0  
ref|XP_009602352.1| PREDICTED: chloroplastic group IIA intron sp...   855   0.0  
ref|XP_002514120.1| conserved hypothetical protein [Ricinus comm...   841   0.0  
gb|KDO48172.1| hypothetical protein CISIN_1g003573mg [Citrus sin...   837   0.0  
ref|XP_006475466.1| PREDICTED: chloroplastic group IIA intron sp...   836   0.0  
ref|XP_006451488.1| hypothetical protein CICLE_v10007477mg [Citr...   836   0.0  
ref|XP_012449426.1| PREDICTED: chloroplastic group IIA intron sp...   835   0.0  

>ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
          Length = 884

 Score =  967 bits (2499), Expect = 0.0
 Identities = 522/904 (57%), Positives = 643/904 (71%), Gaps = 5/904 (0%)
 Frame = -3

Query: 3103 MVLTPFPLDLYXXXXXXXXXXXSLYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHTRQ- 2927
            M L+P P +L+               L   PQ H S  F TLKF   CS+H++Q+ T+Q 
Sbjct: 1    MALSPSPSNLHLH-------------LLLQPQAHYSNTFRTLKFNCSCSYHSIQVDTQQV 47

Query: 2926 ---FNPTKKKRKPKPSFFEEIRDKWSVKPTSLREKLPWKEQQQREPIKEVQEQSQKQFSA 2756
                  TK KRKP+PSFFE+IRDKWS+K  S REK PW+EQ +     E Q  S      
Sbjct: 48   KVPLKTTKAKRKPRPSFFEQIRDKWSLKINSPREKFPWQEQAE-----ETQNSSGVVVPD 102

Query: 2755 SELETDKNYPVSDPVSFGFSNRIISPPWVHGSNPTKTQFDFETRNSQDSCEKGEIVNGFG 2576
            SE+       V  PVS    +R +S P +H S P   +   E   SQ+SCE+G  V GFG
Sbjct: 103  SEVIDSS---VGSPVSSASESRFVSVPCIHESKPRNPRLVSEPEISQNSCEQGVNVVGFG 159

Query: 2575 RNSEKNYHNVGQESKNLERGSNYNGECK-EKIQISSNPVGLQEKNEAELVGADNGVSFNG 2399
             +      +V + SK+ ++  + +G+ + E +++   P+G+    + E+   D  VS N 
Sbjct: 160  SHRA----SVDEWSKSFQKEVDSDGKFEGEGVEVDEIPIGVLGTEKTEIEMGDANVSLNE 215

Query: 2398 KPSRVDREFHSFEGSSDDRDSMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPENELKRL 2219
            KP   D +F +FEG S +   + LPWKR   ++ VE + +   +T++AE+++PE+EL+RL
Sbjct: 216  KPPGGDEDFGNFEGFSGNSSLIELPWKRREGLQPVERDGWGRRNTRMAERMVPEHELRRL 275

Query: 2218 RNVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTG 2039
            +N+ALRM+ERIKVGAAGVTQ LVD+IHEKW++DEVVKLKFEGP + NM+RTHEILE RTG
Sbjct: 276  KNIALRMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTG 335

Query: 2038 GLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRT 1859
            GLVIWR+GSSVVLYRGM+YKLHCVQSY +Q   ++  S  S++  + + Q +  K  V+T
Sbjct: 336  GLVIWRTGSSVVLYRGMAYKLHCVQSYIKQERDNVNISEYSQDAANVIIQDIGVKDIVKT 395

Query: 1858 TESITTGSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGY 1679
            TES+ + SA  LKDLSE+ELMDLSELNHLL+ELGPRFKDWSGR                Y
Sbjct: 396  TESVISDSARYLKDLSEEELMDLSELNHLLDELGPRFKDWSGREPLPVDADLLPSVVHEY 455

Query: 1678 ETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAK 1499
            + PFRLLPY +RH LR+++MT+ RR ARTMPPHFALGR+RELQGLAMAMVKLWE+SAIAK
Sbjct: 456  KPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAIAK 515

Query: 1498 IAIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTA 1319
            IAIKRGVQNT N+RMAEELK LTGGTL+SRNKDYIVFYRGNDFLPP V EAL E +KL  
Sbjct: 516  IAIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYIVFYRGNDFLPPHVMEALKERRKLRD 575

Query: 1318 LRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSA 1139
            L+QD+EEQAR  AS +I S A++AKGPLVAGTLAET+AATSRWG++PS ED+ KM+RDSA
Sbjct: 576  LQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLAATSRWGSEPSEEDVGKMIRDSA 635

Query: 1138 LARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMG 959
            LARHASLVRY                       E LEPAELP DLET+SDEERFLFRK+G
Sbjct: 636  LARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEERFLFRKIG 695

Query: 958  LSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILV 779
            LSMKP+LLLG RGIFDGT+ENMHLHWK+RELVKI V+ K+F+QVK IAISLEAESGG+LV
Sbjct: 696  LSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLV 755

Query: 778  SLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERF 599
            S+D+T KGYAIIVYRGKNYQRP A+RPKNLLTKRQALARSIELQR EALKHHI +L+ER 
Sbjct: 756  SVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQRHEALKHHISDLEERI 815

Query: 598  EKLKSELEKMKNVNEIDGENLYSRMDNAYSSXXXXXXXXXXXEAFPYVYDSENEDVNIYN 419
            + LKS  E+MK  N ID +  YSR+D  YS+           EA+  +Y SE++  NI N
Sbjct: 816  KLLKSLPEEMKTGNGIDDKAFYSRLDGTYST-DEDMEEDEGEEAYLEIYGSEDKGSNIQN 874

Query: 418  KELM 407
            KEL+
Sbjct: 875  KELL 878


>emb|CBI27903.3| unnamed protein product [Vitis vinifera]
          Length = 881

 Score =  935 bits (2417), Expect = 0.0
 Identities = 514/903 (56%), Positives = 619/903 (68%), Gaps = 4/903 (0%)
 Frame = -3

Query: 3103 MVLTPFPLDLYXXXXXXXXXXXSLYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHTRQ- 2927
            M L+P P +L+               L   PQ H S  F TLKF   CS+H++Q+ T+Q 
Sbjct: 43   MALSPSPSNLHLH-------------LLLQPQAHYSNTFRTLKFNCSCSYHSIQVDTQQV 89

Query: 2926 ---FNPTKKKRKPKPSFFEEIRDKWSVKPTSLREKLPWKEQQQREPIKEVQEQSQKQFSA 2756
                  TK KRKP+PSFFE+IRDKWS+K  S REK PW+EQ +     E Q  S      
Sbjct: 90   KVPLKTTKAKRKPRPSFFEQIRDKWSLKINSPREKFPWQEQAE-----ETQNSSGVVVPD 144

Query: 2755 SELETDKNYPVSDPVSFGFSNRIISPPWVHGSNPTKTQFDFETRNSQDSCEKGEIVNGFG 2576
            SE+       V  PVS    +R +S P +H S P   +   E   SQ+SCE+G  V    
Sbjct: 145  SEVIDSS---VGSPVSSASESRFVSVPCIHESKPRNPRLVSEPEISQNSCEQGVNV---- 197

Query: 2575 RNSEKNYHNVGQESKNLERGSNYNGECKEKIQISSNPVGLQEKNEAELVGADNGVSFNGK 2396
                                                      K E E+   D  VS N K
Sbjct: 198  ------------------------------------------KTEIEM--GDANVSLNEK 213

Query: 2395 PSRVDREFHSFEGSSDDRDSMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPENELKRLR 2216
            P   D +F +FEG S +   + LPWKR   ++ VE + +   +T++AE+++PE+EL+RL+
Sbjct: 214  PPGGDEDFGNFEGFSGNSSLIELPWKRREGLQPVERDGWGRRNTRMAERMVPEHELRRLK 273

Query: 2215 NVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGG 2036
            N+ALRM+ERIKVGAAGVTQ LVD+IHEKW++DEVVKLKFEGP + NM+RTHEILE RTGG
Sbjct: 274  NIALRMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGG 333

Query: 2035 LVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTT 1856
            LVIWR+GSSVVLYRGM+YKLHCVQSY +Q   ++  S  S++  + + Q +  K  V+TT
Sbjct: 334  LVIWRTGSSVVLYRGMAYKLHCVQSYIKQERDNVNISEYSQDAANVIIQDIGVKDIVKTT 393

Query: 1855 ESITTGSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYE 1676
            ES+ + SA  LKDLSE+ELMDLSELNHLL+ELGPRFKDWSGR                Y+
Sbjct: 394  ESVISDSARYLKDLSEEELMDLSELNHLLDELGPRFKDWSGREPLPVDADLLPSVVHEYK 453

Query: 1675 TPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKI 1496
             PFRLLPY +RH LR+++MT+ RR ARTMPPHFALGR+RELQGLAMAMVKLWE+SAIAKI
Sbjct: 454  PPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAIAKI 513

Query: 1495 AIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTAL 1316
            AIKRGVQNT N+RMAEELK LTGGTL+SRNKDYIVFYRGNDFLPP V EAL E +KL  L
Sbjct: 514  AIKRGVQNTCNDRMAEELKNLTGGTLVSRNKDYIVFYRGNDFLPPHVMEALKERRKLRDL 573

Query: 1315 RQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSAL 1136
            +QD+EEQAR  AS +I S A++AKGPLVAGTLAET+AATSRWG++PS ED+ KM+RDSAL
Sbjct: 574  QQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLAATSRWGSEPSEEDVGKMIRDSAL 633

Query: 1135 ARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGL 956
            ARHASLVRY                       E LEPAELP DLET+SDEERFLFRK+GL
Sbjct: 634  ARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEERFLFRKIGL 693

Query: 955  SMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVS 776
            SMKP+LLLG RGIFDGT+ENMHLHWK+RELVKI V+ K+F+QVK IAISLEAESGG+LVS
Sbjct: 694  SMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVS 753

Query: 775  LDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFE 596
            +D+T KGYAIIVYRGKNYQRP A+RPKNLLTKRQALARSIELQR EALKHHI +L+ER +
Sbjct: 754  VDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALARSIELQRHEALKHHISDLEERIK 813

Query: 595  KLKSELEKMKNVNEIDGENLYSRMDNAYSSXXXXXXXXXXXEAFPYVYDSENEDVNIYNK 416
             LKS  E+MK  N ID +  YSR+D  YS+           EA+  +Y SE++  NI NK
Sbjct: 814  LLKSLPEEMKTGNGIDDKAFYSRLDGTYST-DEDMEEDEGEEAYLEIYGSEDKGSNIQNK 872

Query: 415  ELM 407
            EL+
Sbjct: 873  ELL 875


>ref|XP_010242233.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nelumbo nucifera]
          Length = 868

 Score =  887 bits (2291), Expect = 0.0
 Identities = 485/839 (57%), Positives = 593/839 (70%), Gaps = 7/839 (0%)
 Frame = -3

Query: 3001 SSIRFLTLKFRPCCSHHAVQL-----HTRQFNPTKKKRKPKPSFFEEIRDKWSVKPTSLR 2837
            SS    TLK    CS  +V++     HT     TKKKRK KPSF+++IRD+WS+K  S R
Sbjct: 35   SSAGLRTLKLERFCSS-SVEIETKGPHTEVARKTKKKRKLKPSFYDQIRDRWSLKLGSPR 93

Query: 2836 EKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPVSDPVSFGFSNRIISPPWVHGSN 2657
            E+LPW+EQ+ +   +   +QS    ++SE +   N    D  SF   NR IS PW HG  
Sbjct: 94   ERLPWQEQESQGQEETGNDQSSSAPNSSEGDGG-NPSFDDLASFALGNRSISAPWSHGDK 152

Query: 2656 PTKTQFDFETRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESKNLERGS--NYNGECKEKI 2483
            P K  FD  T   Q+S   G      G+ +E +Y +       +   S  N++G  KE+ 
Sbjct: 153  PRKPHFDSTTEIVQNSLNNG------GKFAEVHYFSEKSTIPKISEDSVVNHSGSLKEE- 205

Query: 2482 QISSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDV 2303
                     Q  +         G    G          S E S+ + DS+RLPW++E  +
Sbjct: 206  ---------QRSDYIRDDSVKIGPPLTG---------FSGEQSTGNGDSVRLPWEKEKFL 247

Query: 2302 KSVEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKE 2123
            +SV+  R++ S+T+LA K +PE EL+RLRNVALRM ERIKVGAAG+TQ+LVDSI EKWKE
Sbjct: 248  ESVDRGRWRRSTTELAAKTVPETELRRLRNVALRMKERIKVGAAGITQDLVDSIIEKWKE 307

Query: 2122 DEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNL 1943
            DEVVKLKFEGPPA+NM+RTHE LE +T GLVIWRSGSSVVLYRGMSYK  CV+SY + N 
Sbjct: 308  DEVVKLKFEGPPALNMKRTHEALESKTRGLVIWRSGSSVVLYRGMSYKFPCVESYIKDNQ 367

Query: 1942 VDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNE 1763
             +   +  SKE   + +  +    +++T ES +TG+    KDLS +ELMD+++LN+LL+E
Sbjct: 368  ANPDIASHSKESKIDFSGNICVTDAIQTKESSSTGTMTYDKDLS-RELMDMTDLNNLLDE 426

Query: 1762 LGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPP 1583
            LGPRF+DWSG               PGY+ PFRLLPY +RH L++K+MT FRR AR+MPP
Sbjct: 427  LGPRFRDWSGCEPKPVDADLLPCVVPGYKPPFRLLPYGIRHCLKNKEMTSFRRLARSMPP 486

Query: 1582 HFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNK 1403
            HFALGRNR+LQGLA AMVKLWE+S IAKIAIKRGVQNT NERMAEELK LTGGTLLSRNK
Sbjct: 487  HFALGRNRQLQGLARAMVKLWERSEIAKIAIKRGVQNTCNERMAEELKRLTGGTLLSRNK 546

Query: 1402 DYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGT 1223
            DYIVFYRGNDFL PVVTEALVE +KL  LRQD+EEQARQ A  +I SNAKA KGPLVAGT
Sbjct: 547  DYIVFYRGNDFLSPVVTEALVERKKLAELRQDEEEQARQRALALIISNAKAIKGPLVAGT 606

Query: 1222 LAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXX 1043
            LAET+AA SRW  QPSSED++KMM+D+AL+RHASLVRY                      
Sbjct: 607  LAETVAANSRWAKQPSSEDMQKMMKDAALSRHASLVRYLEKKLAQAQEKVKKAEKTLRKV 666

Query: 1042 XECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELV 863
             E L+P ELPTDLET++DEER+LFRKMGLSMKP+LLLGRRG+FDGT+ENMHLHWK+RELV
Sbjct: 667  QEFLKPTELPTDLETLTDEERYLFRKMGLSMKPFLLLGRRGVFDGTVENMHLHWKYRELV 726

Query: 862  KIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLT 683
            KI V+RKSF+Q+K IAISLEAESGG+L+S+DKTTKG+AII+YRGKNYQRP A+RP+NLLT
Sbjct: 727  KIIVKRKSFAQIKHIAISLEAESGGLLISVDKTTKGFAIIIYRGKNYQRPHALRPQNLLT 786

Query: 682  KRQALARSIELQRREALKHHILELQERFEKLKSELEKMKNVNEIDGENLYSRMDNAYSS 506
            ++QAL RSIELQRREAL HHI  L++R   LKSEL +M+ V E   E+LY R+D AYSS
Sbjct: 787  RKQALMRSIELQRREALNHHISRLRQRIGNLKSELNQMEAVQETGDESLYLRLDGAYSS 845


>emb|CDP03154.1| unnamed protein product [Coffea canephora]
          Length = 830

 Score =  884 bits (2284), Expect = 0.0
 Identities = 488/830 (58%), Positives = 573/830 (69%), Gaps = 8/830 (0%)
 Frame = -3

Query: 2980 LKFRPCCSHHAVQLHTRQFNPTKKKRKPKPSFFEEIRDKWSVKPTSLREKLPWKEQQQRE 2801
            LKF+ CCS H++++ T+Q + T+KKRKP+PSF E+I+DKWS KPT L EKLPW+E+++ E
Sbjct: 42   LKFKICCSTHSIEIGTQQSSLTRKKRKPRPSFVEQIQDKWSRKPTILIEKLPWEEEEKEE 101

Query: 2800 PIKEVQEQSQKQ---FS---ASELETDKNYPVSDPVSFGFSNRIISPPWVHGSNPTK-TQ 2642
               E  E+ +++   FS    S+  ++K+  VS P+S G   ++I PPW HG  P K +Q
Sbjct: 102  AKFENFEEDEERNVRFSNGVVSQTASEKSSAVSQPMSSGLPEKVILPPWEHGKKPRKKSQ 161

Query: 2641 FDFETRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESKNLERGSNYNGECKEKIQISSNPV 2462
            FD   RNS+ +    E +NG   +++    N                             
Sbjct: 162  FDNPVRNSRRASNSTESLNGLNDHAQNYATN----------------------------- 192

Query: 2461 GLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDVKSVEGER 2282
                                   SRV +  ++FEG  D             +    +G+R
Sbjct: 193  -----------------------SRVIQNCNNFEGKFD-----------LGEQSGEKGKR 218

Query: 2281 FKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLK 2102
             + S+T++AEK+IPE ELKRLRN+ALRMVERIKVGAAGVTQ LVDSIHEKWK DEVVKLK
Sbjct: 219  LRKSNTEVAEKVIPEPELKRLRNLALRMVERIKVGAAGVTQALVDSIHEKWKLDEVVKLK 278

Query: 2101 FEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSH 1922
            FEGP AMNMR TH+ILE RTGGLVIWRSGS+VVLYRGM YKL CVQSY  Q         
Sbjct: 279  FEGPTAMNMRWTHQILESRTGGLVIWRSGSTVVLYRGMGYKLDCVQSYARQT------QD 332

Query: 1921 SSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKD-LSEKELMDLSELNHLLNELGPRFK 1745
             +KEF     Q   F  S+ T+ S    +A    + LS KEL D SELN LL+ELGPRFK
Sbjct: 333  KTKEFESSGVQVNNFARSIGTSCSAEPSTAKSYSNNLSVKELKDRSELNLLLDELGPRFK 392

Query: 1744 DWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGR 1565
            DWSGR              PGY  PFRLLP+ +RHGLRDK+MT+FRR+AR +PPHFALGR
Sbjct: 393  DWSGREPVPVDADLLPDVVPGYRPPFRLLPHGIRHGLRDKEMTFFRRSARVLPPHFALGR 452

Query: 1564 NRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFY 1385
            NR+LQGLA+AMVKLWEK AIAKIAIKRGVQNT NERMAEELK+LTGGTLLSRNK+YIVFY
Sbjct: 453  NRQLQGLALAMVKLWEKCAIAKIAIKRGVQNTCNERMAEELKVLTGGTLLSRNKEYIVFY 512

Query: 1384 RGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMA 1205
            RGNDFLP  VT+ALVE ++ T L+QD+EE ARQ A  +I SN K A+ PLVAGTL+ET A
Sbjct: 513  RGNDFLPSGVTQALVEKERETVLQQDEEEIARQRALALIASNVKVAERPLVAGTLSETKA 572

Query: 1204 ATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEP 1025
            AT RW NQ + ED+EKMMRDSA+ +HA+LV+                        E  EP
Sbjct: 573  ATLRWNNQATGEDLEKMMRDSAVVKHAALVKSLENKLAIAKGKITKAEKALLKVQENFEP 632

Query: 1024 AELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVER 845
            AE PTDLETI+DEERFL RKMGLSMKPYL LGRRGIFDGTIENMHLHWK+RELVKIFVER
Sbjct: 633  AEQPTDLETINDEERFLLRKMGLSMKPYLFLGRRGIFDGTIENMHLHWKYRELVKIFVER 692

Query: 844  KSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALA 665
            KSF QVK IAISLEAESGGILVS+DKT KGY IIVYRGKNY  P A RPKNLLT+RQALA
Sbjct: 693  KSFPQVKHIAISLEAESGGILVSVDKTAKGYVIIVYRGKNYLPPSAFRPKNLLTRRQALA 752

Query: 664  RSIELQRREALKHHILELQERFEKLKSELEKMKNVNEIDGENLYSRMDNA 515
            RSIELQRREALKHH+ ELQE+ EKLKSELE MKNV EID E LYSR+D+A
Sbjct: 753  RSIELQRREALKHHVAELQEKIEKLKSELEDMKNVKEIDEETLYSRVDDA 802


>ref|XP_011093738.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 887

 Score =  883 bits (2281), Expect = 0.0
 Identities = 494/855 (57%), Positives = 606/855 (70%), Gaps = 13/855 (1%)
 Frame = -3

Query: 3034 LYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHT---RQFNPTKKKRKPKPSFFEEIRDK 2864
            L+FL    QT S   F   K R  C    VQL     ++  P KKKRKP+PSF E+++ K
Sbjct: 23   LFFLELGAQTRSLQSFRPRKLRISCCQKTVQLENETKQKAYPVKKKRKPRPSFLEQVQSK 82

Query: 2863 WSVKPTSLREKLPWKEQQQREPIKEVQEQSQKQFS---ASELETDKNYPVSDPVSFGFSN 2693
            WS++   LRE  PW+E++     +E + Q +  FS   +SE E++K+  VS+P      N
Sbjct: 83   WSIRTPPLRENFPWQEEESGGTNQEFEAQ-RSVFSRDVSSEEESEKSSCVSEPERSQRIN 141

Query: 2692 RIISPPWVHGSNPTKTQFDFE-TRNSQDSCE-KGEIVNGFGRN--SEKNYHNVGQESKNL 2525
            + I  PWVHG N  K  F+ E +RN Q++   K + ++G   +  +E    +V    ++L
Sbjct: 142  KSILAPWVHG-NGRKNVFNSEGSRNIQENVHPKDDGLHGIQEHWPNEDPLVSVVVGYEDL 200

Query: 2524 ERGSNYNGECKEKI-QISSNPVGLQEKNEAELVGADNGVSFNGKP--SRVDREFHSFEGS 2354
             +    NG  +E++ +    P+GL EKNE  ++G +    F      S +  E  S + S
Sbjct: 201  VKEVTENGRSEEEVGEFDDIPIGLSEKNE--ILGNEESEDFAAMEDLSTISLEISSEKCS 258

Query: 2353 SDDRDSMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGA 2174
            +D  D MRLPW+R+ D + V+ E+ +N +T+LAE+LIPE ELKRLRNV+LRMVER+KVGA
Sbjct: 259  NDANDLMRLPWERKIDEEFVKEEKSRNRNTELAERLIPEPELKRLRNVSLRMVERMKVGA 318

Query: 2173 AGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYR 1994
            AGVTQ LVD+IHEKWK +EVVKLKFEGPP+ NMRRTHEILE RTGGLVIWRSGSSVVLYR
Sbjct: 319  AGVTQALVDAIHEKWKHEEVVKLKFEGPPSKNMRRTHEILESRTGGLVIWRSGSSVVLYR 378

Query: 1993 GMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDL 1814
            GM+YKL CV+SY++    D   S SS+E   +  + ++ K      ES    ++     L
Sbjct: 379  GMTYKLDCVKSYSKHVQGDAGASGSSQE---DSPESIKVKRLNGAAESFGVYNSKYYNSL 435

Query: 1813 SEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGL 1634
            S++E MDLSEL+ LL+ELGPRF DWSGR              PG+++PFRLLPY  R  L
Sbjct: 436  SQEEQMDLSELDLLLHELGPRFIDWSGREPLPVDADLLPAVVPGFKSPFRLLPYGTRQAL 495

Query: 1633 RDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERM 1454
            RDK+MTY RRTAR +PPHFALGRNR+LQGLAMAMVKLWEKSAIAKIAIKRGV NTSNERM
Sbjct: 496  RDKEMTYLRRTARLLPPHFALGRNRDLQGLAMAMVKLWEKSAIAKIAIKRGVPNTSNERM 555

Query: 1453 AEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNAST 1274
            AEELKILTGGTL+SRNK++IVFYRGNDFLPP V+ AL+EA++ TAL+QD+EEQARQ A+ 
Sbjct: 556  AEELKILTGGTLVSRNKEFIVFYRGNDFLPPGVSSALIEAERSTALQQDEEEQARQRAAM 615

Query: 1273 MIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXX 1094
            +I   AKA+K PLVAGTLAET+AATSRWG  P+S + EKMMRD+A+ARHAS+V       
Sbjct: 616  LIDPKAKASKQPLVAGTLAETIAATSRWGTHPNSAEKEKMMRDAAVARHASMVDSLQRKL 675

Query: 1093 XXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIF 914
                              +  EP  LPTDLET++DEERFLFR++GLSMKPYLLLGRR +F
Sbjct: 676  AIAKSKIGKAERALQKVLQNQEPESLPTDLETLTDEERFLFRRIGLSMKPYLLLGRREVF 735

Query: 913  DGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYR 734
            DGTIENMHLHWK+RELVKI VERK+FSQVK IA+SLEAESGG+LVS+DKTTKGYAIIVYR
Sbjct: 736  DGTIENMHLHWKYRELVKIIVERKTFSQVKHIAVSLEAESGGVLVSMDKTTKGYAIIVYR 795

Query: 733  GKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSELEKMKNVNE 554
            GKNYQRP   RP+NLLTKRQALARSIELQRREALKHHILEL+E  EKLK ELE+M   N 
Sbjct: 796  GKNYQRPLTFRPRNLLTKRQALARSIELQRREALKHHILELEENLEKLKQELEEMVTANN 855

Query: 553  IDGENLYSRMDNAYS 509
              GE L  R D A S
Sbjct: 856  NGGEALALRTDAAAS 870


>ref|XP_007012812.1| CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|590575888|ref|XP_007012813.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|590575892|ref|XP_007012814.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|508783175|gb|EOY30431.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|508783176|gb|EOY30432.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao] gi|508783177|gb|EOY30433.1| CRS1 / YhbY
            domain-containing protein, putative isoform 1 [Theobroma
            cacao]
          Length = 873

 Score =  878 bits (2269), Expect = 0.0
 Identities = 494/874 (56%), Positives = 606/874 (69%), Gaps = 11/874 (1%)
 Frame = -3

Query: 3103 MVLTPFPLDLYXXXXXXXXXXXSLYFLTHHPQTHS-SIRFLTLKFRP-CCSHHAVQLHTR 2930
            M L+PFP++             SLYFL    QTH  +  F  LKF+P CCSH  +++   
Sbjct: 1    MELSPFPVN----HQTFPTSSRSLYFLLLQAQTHCPNNSFRALKFKPSCCSHQTIKVGVE 56

Query: 2929 QFNPTKKKRKPKPSFFEEIRDKWSVKPT-SLREKLPWKEQQQREPIKEVQEQS-QKQFSA 2756
                  +KRKPKPSF ++I+DKWS+KP  S REK PW+E+++ E  +  ++QS     S 
Sbjct: 57   ----ITRKRKPKPSFLDQIKDKWSLKPIISTREKFPWQEKEEFEEEEVERKQSFGGAISE 112

Query: 2755 SELETDKNYPVSDPVSFGFSNRIISPPWVHGSNPTKTQFDFETRNS------QDSCEKGE 2594
            SE + D     SDPVS  F +R+IS PW HGS   +  FDF    S      +DS    +
Sbjct: 113  SERDEDPQVEGSDPVSSSFPSRVISAPWSHGSEFNEPHFDFVPEISNFESKIEDSFASEK 172

Query: 2593 IVNGFGRNSEKNYHNVGQESKNLERGSNYNGECKEKIQISSNPVGLQEKNEAELVGADNG 2414
             +   G N  +    +  +S++L    N N   K+KI +   PVG   K  A + G ++ 
Sbjct: 173  TIEFPGGNKAEVVGGLIDKSESLNEEVNIN---KQKIGL---PVG---KEVAAVEGLNDV 223

Query: 2413 VSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPEN 2234
            VS         RE  +FE S+ D +           V+   G   K S+T++ +++IPE+
Sbjct: 224  VS--------SRE--NFEVSNSDDEG--------GSVEGDSGRSKKRSNTEMVDRMIPEH 265

Query: 2233 ELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEIL 2054
            E +RLRNVALRMVER KVG AG+TQ LV+ IHE+WK DEVVKLKFE P ++NM+RTHEIL
Sbjct: 266  ESQRLRNVALRMVERTKVGVAGITQALVEYIHERWKMDEVVKLKFEEPLSLNMKRTHEIL 325

Query: 2053 EIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFK 1874
            E RTGGLVIWRSGSS+VLYRGM+YKLHCVQSYT QN VDM     S     + TQ +  K
Sbjct: 326  EQRTGGLVIWRSGSSLVLYRGMAYKLHCVQSYTSQNKVDMNALDCSTNVESDTTQNIVVK 385

Query: 1873 GSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXX 1694
             SVRT E     S+  LKDLS++ELMDL ELNHLL+ELGPR+KDWSGR            
Sbjct: 386  ESVRTMECFMPSSSEYLKDLSKEELMDLCELNHLLDELGPRYKDWSGREPLPVDADLLPP 445

Query: 1693 XXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEK 1514
              PGY+ PFR LPY +RH L+D +MT FRR ART+PPHFALGRNRELQGLA A+VKLWE 
Sbjct: 446  VVPGYQPPFRRLPYGIRHCLKDHEMTTFRRLARTVPPHFALGRNRELQGLAEAIVKLWES 505

Query: 1513 SAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEA 1334
            SAIAKIAIKRGVQNT NERMAEELK LTGGTLLSRNK++IVFYRGNDFLPPVVT+ L E 
Sbjct: 506  SAIAKIAIKRGVQNTRNERMAEELKQLTGGTLLSRNKEFIVFYRGNDFLPPVVTKTLKER 565

Query: 1333 QKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKM 1154
            QK   L+Q++EE+AR+    ++ SNAKA+K PLVAGTLAET AATSRWG+QPS E++E+M
Sbjct: 566  QKSRNLQQEEEEKARERVLALVGSNAKASKLPLVAGTLAETTAATSRWGHQPSIEEVEEM 625

Query: 1153 MRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFL 974
             ++SAL + ASLVRY                       + LEPA+LPTDLET+SDEER L
Sbjct: 626  KKNSALTQQASLVRYLEKKLALAIGKLRKANKALAKVQKHLEPADLPTDLETLSDEERIL 685

Query: 973  FRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAES 794
            FRK+GLSMKPYLLLGRRG++DGTIENMHLHWK+RELVKI V+ ++F+QVK IAISLEAES
Sbjct: 686  FRKIGLSMKPYLLLGRRGVYDGTIENMHLHWKYRELVKIIVKGENFAQVKHIAISLEAES 745

Query: 793  GGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILE 614
            GG+LVSLDKTTKGYAII+YRGKNY RP  +RPKNLLT+RQALARS+ELQRREALKHH+L+
Sbjct: 746  GGLLVSLDKTTKGYAIIIYRGKNYMRPCVLRPKNLLTRRQALARSVELQRREALKHHVLD 805

Query: 613  LQERFEKLKSELEKMKNVNEID-GENLYSRMDNA 515
            LQE+ E +KSELE+MK   EID  +  YSR++ A
Sbjct: 806  LQEKIELMKSELEEMKTGKEIDVDKTSYSRLNKA 839


>ref|XP_009352661.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Pyrus x bretschneideri]
            gi|694323163|ref|XP_009352662.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            [Pyrus x bretschneideri] gi|694323165|ref|XP_009352663.1|
            PREDICTED: chloroplastic group IIA intron splicing
            facilitator CRS1, chloroplastic [Pyrus x bretschneideri]
          Length = 985

 Score =  874 bits (2257), Expect = 0.0
 Identities = 498/944 (52%), Positives = 609/944 (64%), Gaps = 85/944 (9%)
 Frame = -3

Query: 3010 QTHSSIRFLTLKFRPCCSHHAVQLHTRQ------FNPTKKKRKPKPSFFEEIRDKWSVKP 2849
            Q H S    +L+FR  C    +    +       F PTKKKRKPKPSFFE+I+DKWS+K 
Sbjct: 37   QAHYSKSCRSLRFRVSCKTGQIDTQEQPQRTKVAFEPTKKKRKPKPSFFEQIQDKWSMKV 96

Query: 2848 TSLREKLPWKEQ-----QQREPIKEVQEQSQKQFSASELETDKNYPVSDPVSFGFSNRII 2684
             S RE  PW++Q     ++ E  +E +E+ QK    S  E     PV   VSF   NRI+
Sbjct: 97   NSPRENFPWQKQNVVLEEEEEEEEEEEEEGQKSSGVSASE-----PVKQTVSFSLPNRIV 151

Query: 2683 SPPWVHGSNPTKTQFDFETRNSQDSCEKGEIVNGFGRNSEKNYHNVGQES-KNLER---- 2519
              PW HGS P K Q D+E+  SQ S  +G+ + GF R+SE +  + G E  K LE+    
Sbjct: 152  YAPWSHGSKPIKPQVDYESATSQHSVAQGKNLGGFVRHSEIDTTSGGVEKEKRLEQRFDS 211

Query: 2518 ------------GSNYNGECKEKIQISSN------------------------------- 2468
                        G   NG  K++ ++ SN                               
Sbjct: 212  TKKLGRESVGANGGISNGVSKKEEKMISNGSNGVSFNETLSVDGGNDEKIEKEKSFKQRF 271

Query: 2467 -----------------PVGLQEKNEAELVGADNGVSFN-------GKPSRVDREFHSFE 2360
                              +G+ +K +  +    NG+SF+        K  +V+   H   
Sbjct: 272  DGKRKLESKSIGENGGTSIGVSKKEDKMISKGLNGISFDETISGDGAKNEKVENFVHIHS 331

Query: 2359 GSSDDRDSMRLPWKRESDVKSVEGE--RFKNSSTKLAEKLIPENELKRLRNVALRMVERI 2186
            GS D   S+RLPW+RES++ S EG+  R + S+T L E+++P++ELKRLRNV+LRM+ERI
Sbjct: 332  GSCD---SIRLPWERESELGSEEGDKARKRRSNTDLVERMLPDHELKRLRNVSLRMLERI 388

Query: 2185 KVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSV 2006
            KVG +G+TQ LVD+IHEKWK DEVVKLKFE P ++NM+RTHEILE +TGGLVIWRSGSSV
Sbjct: 389  KVGVSGITQALVDTIHEKWKVDEVVKLKFEEPFSLNMKRTHEILESKTGGLVIWRSGSSV 448

Query: 2005 VLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGR 1826
            VLYRGM+Y + CVQSY +Q+  +    H +++   +   +V  K   RTT+  +  SA  
Sbjct: 449  VLYRGMTYNIPCVQSYAKQSQTNSHMLHHTEDATRDGMHKVGMKDVSRTTDFPSLESAEY 508

Query: 1825 LKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRL 1646
            LKDLS++ELMDLS LNHLL+ELGPRFKDW GR              PGY+TPFRLLPY +
Sbjct: 509  LKDLSQRELMDLSVLNHLLDELGPRFKDWIGREPLPVDADLLPPVIPGYKTPFRLLPYGV 568

Query: 1645 RHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTS 1466
            R GLR+KDMT FRR ART+PPHFALGRNRELQGLA AMVKLWEKSAIAKIAIKRGVQNT 
Sbjct: 569  RPGLRNKDMTKFRRLARTVPPHFALGRNRELQGLANAMVKLWEKSAIAKIAIKRGVQNTC 628

Query: 1465 NERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQ 1286
            NERMAEELK LTGGTLLSRNKD+IVFYRGND+LP VVT  L E +KL  L+QD+EEQARQ
Sbjct: 629  NERMAEELKRLTGGTLLSRNKDFIVFYRGNDYLPSVVTGVLKERRKLRDLQQDEEEQARQ 688

Query: 1285 NASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYX 1106
             AS  + S  +A+KG LVAGTLAET+AAT+RW NQ + + +EKM RDS LARHASLVR+ 
Sbjct: 689  MASDFVESKPEASKGQLVAGTLAETLAATTRWRNQLTIDKVEKMTRDSTLARHASLVRHL 748

Query: 1105 XXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGR 926
                                  E LEP++LP DLET++DE+RFLFRK+GLSMKP+LLLGR
Sbjct: 749  EKKLALAKGKLRKAEKALARVQESLEPSDLPDDLETLTDEDRFLFRKIGLSMKPFLLLGR 808

Query: 925  RGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAI 746
            RG++ GTIENMHLHWK RELVKI V  KSF QVK +AISLEAESGG+LVSLDKTTKGYA+
Sbjct: 809  RGVYSGTIENMHLHWKHRELVKIIVRGKSFEQVKHVAISLEAESGGVLVSLDKTTKGYAV 868

Query: 745  IVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSELEKMK 566
            IVYRGKNYQ P  +RP+NLLT+RQALARSIELQRREALKHHI +L ER E LKSEL+   
Sbjct: 869  IVYRGKNYQCPLPLRPRNLLTRRQALARSIELQRREALKHHISDLLERVELLKSELKDTG 928

Query: 565  NVNEIDGENLYSRMDNAYSSXXXXXXXXXXXEAFPYVYDSENED 434
                +DG        + YS            EA+  VYD  N D
Sbjct: 929  KGKMVDGGRTLPSTVDDYSIPSDDSDEEEGEEAYLEVYDCGNVD 972


>ref|XP_008360480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
            gi|658062676|ref|XP_008367245.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
            gi|658062678|ref|XP_008367246.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
            gi|658062680|ref|XP_008367247.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
          Length = 986

 Score =  869 bits (2245), Expect = 0.0
 Identities = 498/945 (52%), Positives = 609/945 (64%), Gaps = 86/945 (9%)
 Frame = -3

Query: 3010 QTHSSIRFLTLKFRPCCSHHAVQLHTRQ------FNPTKKKRKPKPSFFEEIRDKWSVKP 2849
            QTH S    TL+FR  C    +    +       F PTKKKRKPKPSFFE+I+DKWS+K 
Sbjct: 37   QTHYSKSCRTLRFRVSCKTGQIDTQEQPQRIKVAFEPTKKKRKPKPSFFEQIQDKWSMKV 96

Query: 2848 TSLREKLPWK------EQQQREPIKEVQEQSQKQFSASELETDKNYPVSDPVSFGFSNRI 2687
             S RE  PW+      E+++ E  +E +E+ QK    S  E     PV   VS    NR+
Sbjct: 97   NSPRENFPWQKQNVELEEEEEEEEEEEEEEGQKSSGVSASE-----PVKQTVSVSLPNRV 151

Query: 2686 ISPPWVHGSNPTKTQFDFETRNSQDSCEKGEIVNGFGRNSE------------------K 2561
            +  PW HGS P K Q D+E   SQ S  +G+ + GF R+SE                   
Sbjct: 152  VYAPWSHGSKPIKPQVDYEPATSQHSVXQGKNLGGFVRHSEIDTTSGSVEKEKRLEQQFD 211

Query: 2560 NYHNVGQES----------------KNLERGSN---------YNGECKEKIQISSN---- 2468
            +   +G+ES                K + +GSN          +G   EKI+   +    
Sbjct: 212  SNRKLGRESVGANGGISNGISKEEEKMISKGSNGISFNETLSVDGGNDEKIEKEKSFEQR 271

Query: 2467 ------------------PVGLQEKNEAELVGADNGVSFNGKPS-------RVDREFHSF 2363
                               +G  +K +  +    NGV F+   S       RV+   H+ 
Sbjct: 272  FDSKRKLESKSVGENDGTSIGFSKKEDKMISKGLNGVYFDETISGDGANNERVENFVHTH 331

Query: 2362 EGSSDDRDSMRLPWKRESDVKSVEGE--RFKNSSTKLAEKLIPENELKRLRNVALRMVER 2189
             GS D   S+RLPW+RES++ S EG+  R + S+T LAE+++P++ELKRLRNV+LRM+ER
Sbjct: 332  SGSCD---SIRLPWERESELGSEEGDKARKRRSNTDLAEQMLPDHELKRLRNVSLRMLER 388

Query: 2188 IKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSS 2009
            IKVG +G+TQ LVD+IHEKWK DEVVKLKFE P ++NM+RTHEILE +TGGL+IWRSGSS
Sbjct: 389  IKVGVSGITQALVDTIHEKWKVDEVVKLKFEEPFSLNMKRTHEILESKTGGLIIWRSGSS 448

Query: 2008 VVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAG 1829
            VVLYRGM+Y + CVQSY +Q+  +    H +++   +   +V  K   RTT+  +  SA 
Sbjct: 449  VVLYRGMTYNIPCVQSYAKQSQSNSLMLHHTEDATRDGMHKVGMKDVSRTTDFPSLESAE 508

Query: 1828 RLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYR 1649
             LKDLS++ELMDLS LNHLL+ELGPRFKDW GR              PGY+TPFRLLPY 
Sbjct: 509  YLKDLSQRELMDLSVLNHLLDELGPRFKDWIGREPLPVDADLLPPMIPGYKTPFRLLPYG 568

Query: 1648 LRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNT 1469
            +R GLR+KDMT FRR ART+PPHFALGRNRELQGLA AMVKLWEKSAIAKIAIKRGVQNT
Sbjct: 569  VRPGLRNKDMTKFRRLARTVPPHFALGRNRELQGLANAMVKLWEKSAIAKIAIKRGVQNT 628

Query: 1468 SNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQAR 1289
             NERMAEELK LTGGTLLSRNKD+IVFYRGND+LPPVVT  L E +KL  L+QD+EEQAR
Sbjct: 629  CNERMAEELKRLTGGTLLSRNKDFIVFYRGNDYLPPVVTGVLKERRKLRDLQQDEEEQAR 688

Query: 1288 QNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRY 1109
            Q AS  + S  +A+KG LVAGTLAET+AAT+RW NQ + + +EKM RDS LARHASLVR+
Sbjct: 689  QMASDFVESKPEASKGQLVAGTLAETLAATTRWRNQLTIDKVEKMTRDSTLARHASLVRH 748

Query: 1108 XXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLG 929
                                   E LEP++LP DLET++DE+RFLFRK+GL MKP+LLLG
Sbjct: 749  LEKKLALAKGKLRKAEKALARVQESLEPSDLPDDLETLTDEDRFLFRKIGLCMKPFLLLG 808

Query: 928  RRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYA 749
            RR ++ GTIENMHLHWK RELVKI V  KSF QVK IAISLEAESGG+LVSLDKTTKGYA
Sbjct: 809  RREVYSGTIENMHLHWKHRELVKIIVRGKSFEQVKHIAISLEAESGGVLVSLDKTTKGYA 868

Query: 748  IIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSELEKM 569
            +IVYRGKNYQ P  +RP+NLLT+RQALARSIELQRREALKHHI +L ER + LKSEL++ 
Sbjct: 869  VIVYRGKNYQCPLPLRPRNLLTRRQALARSIELQRREALKHHISDLLERVKLLKSELKET 928

Query: 568  KNVNEIDGENLYSRMDNAYSSXXXXXXXXXXXEAFPYVYDSENED 434
                 +DG        + YS            EA+  VYD  N D
Sbjct: 929  GKGEMVDGGRTLPSTVDDYSIPSDDSDEEEGEEAYLEVYDCGNVD 973


>ref|XP_007203795.1| hypothetical protein PRUPE_ppa001111mg [Prunus persica]
            gi|462399326|gb|EMJ04994.1| hypothetical protein
            PRUPE_ppa001111mg [Prunus persica]
          Length = 906

 Score =  867 bits (2240), Expect = 0.0
 Identities = 489/892 (54%), Positives = 608/892 (68%), Gaps = 23/892 (2%)
 Frame = -3

Query: 3034 LYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHTRQ--------FNPTKKKRKPKPSFFE 2879
            L FL  H QTHS      L+FR  C    VQ+ T++        F  T+KKRKPKPSFFE
Sbjct: 26   LCFLLLHHQTHSFKSCRALRFRVSCK--TVQVDTQEQPQRIKVAFEATRKKRKPKPSFFE 83

Query: 2878 EIRDKWSVKPTSLREKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPVSDPVSFGF 2699
            +I+DKWS+K  S R+K PW  Q+Q E ++E +E+ ++       E ++  PV+  VSF  
Sbjct: 84   QIQDKWSMKVNSPRDKFPW--QKQNELVQEEKEEVEE-------EDEEEEPVNQKVSFSL 134

Query: 2698 SNRIISPPWVHGSNPTKTQFDFETRNSQDSCEKGEIVNGFGRNSE-KNYHNVGQESKNLE 2522
             NRI+  PW HGS     Q D E   SQ S  +G+ ++GF  +SE        +  K+ E
Sbjct: 135  PNRIVYAPWAHGSKRITPQVDSEPETSQHSGAQGKNLDGFAGHSEIDTTSGAVKNEKSFE 194

Query: 2521 RGSNYNGEC-KEKI-QISSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSD 2348
            R  + N +  +E++ +I    +G+ +K E  +    NG+S N        E  S +G +D
Sbjct: 195  RRFDSNRKLERERVGEIGIISIGVSKKEEKMISKGLNGISLN--------ETLSGDGEND 246

Query: 2347 DR---------DSMRLPWKRESDVKSVEGE--RFKNSSTKLAEKLIPENELKRLRNVALR 2201
            ++          S+RLPWKRES++ S EG+  R + S+T+LAE+++P++EL+RLRNV+LR
Sbjct: 247  EKVENFVYSGSGSIRLPWKRESELSSEEGDKTRKRRSNTELAERMLPDHELRRLRNVSLR 306

Query: 2200 MVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWR 2021
            M+ERIKVG  G+TQ LV++IHEKWK DEVVKLKFE P ++NM+RTHEILE +TGGLVIWR
Sbjct: 307  MLERIKVGVTGITQALVNTIHEKWKIDEVVKLKFEEPFSLNMKRTHEILESKTGGLVIWR 366

Query: 2020 SGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITT 1841
            SGSSVVLYRGM+Y L CVQ+Y + +  +      S+    +    V  K   RTT+  + 
Sbjct: 367  SGSSVVLYRGMTYNLPCVQTYAKHSQTNSHMLQHSENATSDSMHNVGVKDVSRTTDFPSL 426

Query: 1840 GSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRL 1661
             SA  LKDLS++ELM L++LNHLL+ELGPRFKDW GR               GY+TPFRL
Sbjct: 427  ESAEYLKDLSQRELMALNDLNHLLDELGPRFKDWIGREPLPVDADLLPSVVRGYKTPFRL 486

Query: 1660 LPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRG 1481
            LPY  R  LRDKDMT +RR ART+PPHFALG NRELQGLA AM+KLWEKSAIAKIAIKRG
Sbjct: 487  LPYGFRPCLRDKDMTKYRRLARTVPPHFALGMNRELQGLANAMMKLWEKSAIAKIAIKRG 546

Query: 1480 VQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDE 1301
            VQNT NERMAEELK LTGGTLLSRNKD+IVFYRGND+LP VVT  L E +KL  L+QD+E
Sbjct: 547  VQNTCNERMAEELKRLTGGTLLSRNKDFIVFYRGNDYLPSVVTGVLEERRKLRDLQQDEE 606

Query: 1300 EQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHAS 1121
            EQARQ AS  + SN++A+KG  VAGTLAETMAAT+ W NQ + + +EKM RDS  ARHAS
Sbjct: 607  EQARQMASDYVVSNSEASKGQFVAGTLAETMAATTHWRNQLTIDKVEKMRRDSTFARHAS 666

Query: 1120 LVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPY 941
            LVR+                       E LEP++LP DLET++DE+RFLFRK+GLSMKP+
Sbjct: 667  LVRHLEKKLALGKGKLRKAEKALARVQESLEPSDLPDDLETLTDEDRFLFRKIGLSMKPF 726

Query: 940  LLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTT 761
            LLLGRR ++ GTIENMHLHWK +ELVKI V  KSF QVK IAISLEAESGG+LVSLDKTT
Sbjct: 727  LLLGRREVYSGTIENMHLHWKHKELVKIIVRGKSFEQVKHIAISLEAESGGVLVSLDKTT 786

Query: 760  KGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSE 581
            KGYAII+YRGKNYQ P  +RP+NLLT+RQALARS+ELQRREALKHHI +LQE+   LKSE
Sbjct: 787  KGYAIILYRGKNYQCPLPLRPRNLLTRRQALARSVELQRREALKHHISDLQEKVGLLKSE 846

Query: 580  LEKMKNVNEI-DGENLYSRMDNAYSSXXXXXXXXXXXEAFPYVYDSENEDVN 428
            LE+M N   + DG  L+S  D+               EA+  VYDS NED N
Sbjct: 847  LEEMGNGRMVDDGRTLHSTGDDPL-IPSDDSEEDEGEEAYLEVYDSGNEDNN 897


>ref|XP_007012815.1| CRS1 / YhbY domain-containing protein, putative isoform 4 [Theobroma
            cacao] gi|508783178|gb|EOY30434.1| CRS1 / YhbY
            domain-containing protein, putative isoform 4 [Theobroma
            cacao]
          Length = 818

 Score =  864 bits (2233), Expect = 0.0
 Identities = 484/853 (56%), Positives = 593/853 (69%), Gaps = 10/853 (1%)
 Frame = -3

Query: 3103 MVLTPFPLDLYXXXXXXXXXXXSLYFLTHHPQTHS-SIRFLTLKFRP-CCSHHAVQLHTR 2930
            M L+PFP++             SLYFL    QTH  +  F  LKF+P CCSH  +++   
Sbjct: 1    MELSPFPVN----HQTFPTSSRSLYFLLLQAQTHCPNNSFRALKFKPSCCSHQTIKVGVE 56

Query: 2929 QFNPTKKKRKPKPSFFEEIRDKWSVKPT-SLREKLPWKEQQQREPIKEVQEQS-QKQFSA 2756
                  +KRKPKPSF ++I+DKWS+KP  S REK PW+E+++ E  +  ++QS     S 
Sbjct: 57   ----ITRKRKPKPSFLDQIKDKWSLKPIISTREKFPWQEKEEFEEEEVERKQSFGGAISE 112

Query: 2755 SELETDKNYPVSDPVSFGFSNRIISPPWVHGSNPTKTQFDFETRNS------QDSCEKGE 2594
            SE + D     SDPVS  F +R+IS PW HGS   +  FDF    S      +DS    +
Sbjct: 113  SERDEDPQVEGSDPVSSSFPSRVISAPWSHGSEFNEPHFDFVPEISNFESKIEDSFASEK 172

Query: 2593 IVNGFGRNSEKNYHNVGQESKNLERGSNYNGECKEKIQISSNPVGLQEKNEAELVGADNG 2414
             +   G N  +    +  +S++L    N N   K+KI +   PVG   K  A + G ++ 
Sbjct: 173  TIEFPGGNKAEVVGGLIDKSESLNEEVNIN---KQKIGL---PVG---KEVAAVEGLNDV 223

Query: 2413 VSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPEN 2234
            VS         RE  +FE S+ D +           V+   G   K S+T++ +++IPE+
Sbjct: 224  VS--------SRE--NFEVSNSDDEG--------GSVEGDSGRSKKRSNTEMVDRMIPEH 265

Query: 2233 ELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEIL 2054
            E +RLRNVALRMVER KVG AG+TQ LV+ IHE+WK DEVVKLKFE P ++NM+RTHEIL
Sbjct: 266  ESQRLRNVALRMVERTKVGVAGITQALVEYIHERWKMDEVVKLKFEEPLSLNMKRTHEIL 325

Query: 2053 EIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFK 1874
            E RTGGLVIWRSGSS+VLYRGM+YKLHCVQSYT QN VDM     S     + TQ +  K
Sbjct: 326  EQRTGGLVIWRSGSSLVLYRGMAYKLHCVQSYTSQNKVDMNALDCSTNVESDTTQNIVVK 385

Query: 1873 GSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXX 1694
             SVRT E     S+  LKDLS++ELMDL ELNHLL+ELGPR+KDWSGR            
Sbjct: 386  ESVRTMECFMPSSSEYLKDLSKEELMDLCELNHLLDELGPRYKDWSGREPLPVDADLLPP 445

Query: 1693 XXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEK 1514
              PGY+ PFR LPY +RH L+D +MT FRR ART+PPHFALGRNRELQGLA A+VKLWE 
Sbjct: 446  VVPGYQPPFRRLPYGIRHCLKDHEMTTFRRLARTVPPHFALGRNRELQGLAEAIVKLWES 505

Query: 1513 SAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEA 1334
            SAIAKIAIKRGVQNT NERMAEELK LTGGTLLSRNK++IVFYRGNDFLPPVVT+ L E 
Sbjct: 506  SAIAKIAIKRGVQNTRNERMAEELKQLTGGTLLSRNKEFIVFYRGNDFLPPVVTKTLKER 565

Query: 1333 QKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKM 1154
            QK   L+Q++EE+AR+    ++ SNAKA+K PLVAGTLAET AATSRWG+QPS E++E+M
Sbjct: 566  QKSRNLQQEEEEKARERVLALVGSNAKASKLPLVAGTLAETTAATSRWGHQPSIEEVEEM 625

Query: 1153 MRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFL 974
             ++SAL + ASLVRY                       + LEPA+LPTDLET+SDEER L
Sbjct: 626  KKNSALTQQASLVRYLEKKLALAIGKLRKANKALAKVQKHLEPADLPTDLETLSDEERIL 685

Query: 973  FRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAES 794
            FRK+GLSMKPYLLLGRRG++DGTIENMHLHWK+RELVKI V+ ++F+QVK IAISLEAES
Sbjct: 686  FRKIGLSMKPYLLLGRRGVYDGTIENMHLHWKYRELVKIIVKGENFAQVKHIAISLEAES 745

Query: 793  GGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILE 614
            GG+LVSLDKTTKGYAII+YRGKNY RP  +RPKNLLT+RQALARS+ELQRREALKHH+L+
Sbjct: 746  GGLLVSLDKTTKGYAIIIYRGKNYMRPCVLRPKNLLTRRQALARSVELQRREALKHHVLD 805

Query: 613  LQERFEKLKSELE 575
            LQE+ E +KSEL+
Sbjct: 806  LQEKIELMKSELK 818


>ref|XP_007012816.1| CRS1 / YhbY domain-containing protein, putative isoform 5 [Theobroma
            cacao] gi|590575903|ref|XP_007012817.1| CRS1 / YhbY
            domain-containing protein, putative isoform 5 [Theobroma
            cacao] gi|508783179|gb|EOY30435.1| CRS1 / YhbY
            domain-containing protein, putative isoform 5 [Theobroma
            cacao] gi|508783180|gb|EOY30436.1| CRS1 / YhbY
            domain-containing protein, putative isoform 5 [Theobroma
            cacao]
          Length = 822

 Score =  864 bits (2232), Expect = 0.0
 Identities = 484/852 (56%), Positives = 592/852 (69%), Gaps = 10/852 (1%)
 Frame = -3

Query: 3103 MVLTPFPLDLYXXXXXXXXXXXSLYFLTHHPQTHS-SIRFLTLKFRP-CCSHHAVQLHTR 2930
            M L+PFP++             SLYFL    QTH  +  F  LKF+P CCSH  +++   
Sbjct: 1    MELSPFPVN----HQTFPTSSRSLYFLLLQAQTHCPNNSFRALKFKPSCCSHQTIKVGVE 56

Query: 2929 QFNPTKKKRKPKPSFFEEIRDKWSVKPT-SLREKLPWKEQQQREPIKEVQEQS-QKQFSA 2756
                  +KRKPKPSF ++I+DKWS+KP  S REK PW+E+++ E  +  ++QS     S 
Sbjct: 57   ----ITRKRKPKPSFLDQIKDKWSLKPIISTREKFPWQEKEEFEEEEVERKQSFGGAISE 112

Query: 2755 SELETDKNYPVSDPVSFGFSNRIISPPWVHGSNPTKTQFDFETRNS------QDSCEKGE 2594
            SE + D     SDPVS  F +R+IS PW HGS   +  FDF    S      +DS    +
Sbjct: 113  SERDEDPQVEGSDPVSSSFPSRVISAPWSHGSEFNEPHFDFVPEISNFESKIEDSFASEK 172

Query: 2593 IVNGFGRNSEKNYHNVGQESKNLERGSNYNGECKEKIQISSNPVGLQEKNEAELVGADNG 2414
             +   G N  +    +  +S++L    N N   K+KI +   PVG   K  A + G ++ 
Sbjct: 173  TIEFPGGNKAEVVGGLIDKSESLNEEVNIN---KQKIGL---PVG---KEVAAVEGLNDV 223

Query: 2413 VSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPEN 2234
            VS         RE  +FE S+ D +           V+   G   K S+T++ +++IPE+
Sbjct: 224  VS--------SRE--NFEVSNSDDEG--------GSVEGDSGRSKKRSNTEMVDRMIPEH 265

Query: 2233 ELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEIL 2054
            E +RLRNVALRMVER KVG AG+TQ LV+ IHE+WK DEVVKLKFE P ++NM+RTHEIL
Sbjct: 266  ESQRLRNVALRMVERTKVGVAGITQALVEYIHERWKMDEVVKLKFEEPLSLNMKRTHEIL 325

Query: 2053 EIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFK 1874
            E RTGGLVIWRSGSS+VLYRGM+YKLHCVQSYT QN VDM     S     + TQ +  K
Sbjct: 326  EQRTGGLVIWRSGSSLVLYRGMAYKLHCVQSYTSQNKVDMNALDCSTNVESDTTQNIVVK 385

Query: 1873 GSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXX 1694
             SVRT E     S+  LKDLS++ELMDL ELNHLL+ELGPR+KDWSGR            
Sbjct: 386  ESVRTMECFMPSSSEYLKDLSKEELMDLCELNHLLDELGPRYKDWSGREPLPVDADLLPP 445

Query: 1693 XXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEK 1514
              PGY+ PFR LPY +RH L+D +MT FRR ART+PPHFALGRNRELQGLA A+VKLWE 
Sbjct: 446  VVPGYQPPFRRLPYGIRHCLKDHEMTTFRRLARTVPPHFALGRNRELQGLAEAIVKLWES 505

Query: 1513 SAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEA 1334
            SAIAKIAIKRGVQNT NERMAEELK LTGGTLLSRNK++IVFYRGNDFLPPVVT+ L E 
Sbjct: 506  SAIAKIAIKRGVQNTRNERMAEELKQLTGGTLLSRNKEFIVFYRGNDFLPPVVTKTLKER 565

Query: 1333 QKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKM 1154
            QK   L+Q++EE+AR+    ++ SNAKA+K PLVAGTLAET AATSRWG+QPS E++E+M
Sbjct: 566  QKSRNLQQEEEEKARERVLALVGSNAKASKLPLVAGTLAETTAATSRWGHQPSIEEVEEM 625

Query: 1153 MRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFL 974
             ++SAL + ASLVRY                       + LEPA+LPTDLET+SDEER L
Sbjct: 626  KKNSALTQQASLVRYLEKKLALAIGKLRKANKALAKVQKHLEPADLPTDLETLSDEERIL 685

Query: 973  FRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAES 794
            FRK+GLSMKPYLLLGRRG++DGTIENMHLHWK+RELVKI V+ ++F+QVK IAISLEAES
Sbjct: 686  FRKIGLSMKPYLLLGRRGVYDGTIENMHLHWKYRELVKIIVKGENFAQVKHIAISLEAES 745

Query: 793  GGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILE 614
            GG+LVSLDKTTKGYAII+YRGKNY RP  +RPKNLLT+RQALARS+ELQRREALKHH+L+
Sbjct: 746  GGLLVSLDKTTKGYAIIIYRGKNYMRPCVLRPKNLLTRRQALARSVELQRREALKHHVLD 805

Query: 613  LQERFEKLKSEL 578
            LQE+ E +KSEL
Sbjct: 806  LQEKIELMKSEL 817


>ref|XP_009799178.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana sylvestris]
          Length = 827

 Score =  860 bits (2222), Expect = 0.0
 Identities = 469/832 (56%), Positives = 574/832 (68%), Gaps = 1/832 (0%)
 Frame = -3

Query: 3013 PQTHSSIRFLTLKFRPCCSHHAVQLHTR-QFNPTKKKRKPKPSFFEEIRDKWSVKPTSLR 2837
            P+  S   F     R  CS   +      Q N TKKK+KP+PSF E+++DKWSVK TSLR
Sbjct: 33   PKIQSLQNFRAKSIRIYCSSQTIHSDKENQTNQTKKKQKPRPSFLEQVQDKWSVKTTSLR 92

Query: 2836 EKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPVSDPVSFGFSNRIISPPWVHGSN 2657
            EK PW+E         ++E +++   +S  +T++N  V++ VS G   ++   PWVHG+ 
Sbjct: 93   EKFPWQELNS----VSIEEVAEQDLLSSVSKTEENPVVNESVSSGSRIKVNLAPWVHGNQ 148

Query: 2656 PTKTQFDFETRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESKNLERGSNYNGECKEKIQI 2477
            P K+Q D                                E++N E+ +N+     E++ I
Sbjct: 149  PKKSQLD------------------------------SFEARNFEKNANWENNVSEELDI 178

Query: 2476 SSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDVKS 2297
             S   G  EK+    +  +  VS   +     +   +F+      +S RLPW+ E DV  
Sbjct: 179  ES---GKDEKD----IKLETKVSHRYEV----QSSSNFDKGITYANSDRLPWQGERDVGP 227

Query: 2296 VEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKEDE 2117
              G++ + S+T++AEK+IPE +LK+LRN ALRMVERIKVG+AGVTQELVDSIHEKWK DE
Sbjct: 228  ASGDKLRKSNTEMAEKMIPEPQLKKLRNAALRMVERIKVGSAGVTQELVDSIHEKWKVDE 287

Query: 2116 VVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVD 1937
            +VKL+FEGPP+ NM+RTHEILE RTGGLVIWRSGSS+VLYRG+ YKL CVQS+T +N  D
Sbjct: 288  IVKLRFEGPPSHNMKRTHEILEHRTGGLVIWRSGSSIVLYRGIPYKLPCVQSFTTRN-DD 346

Query: 1936 MKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNELG 1757
            +  S SSK   ++  Q    K     TE    G      +LS  E+ DLSELN LL+E+G
Sbjct: 347  IDESESSK---NDNGQSFGVKSLNEATERPRNG----FSNLSGAEIRDLSELNMLLDEVG 399

Query: 1756 PRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHF 1577
            PRFKDWSGR              PGY  PFR LPY  +  L++K+MTY RRTAR MPPHF
Sbjct: 400  PRFKDWSGREPLPVDADMLPAVVPGYRPPFRRLPYGAKLNLKNKEMTYLRRTARIMPPHF 459

Query: 1576 ALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKDY 1397
            ALGRNRELQGLA AM KLW  SAIAKIAIKRGVQNTSNERMAEELK+LTGGTL+SRNKDY
Sbjct: 460  ALGRNRELQGLAAAMAKLWRGSAIAKIAIKRGVQNTSNERMAEELKVLTGGTLISRNKDY 519

Query: 1396 IVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLA 1217
            IVFYRGNDFLPP VTEALVEA+  +A  QD EEQARQ A+T+I+S+ KA K PL+AGTL+
Sbjct: 520  IVFYRGNDFLPPRVTEALVEAESKSAFLQDQEEQARQRAATLIHSDTKAPKRPLIAGTLS 579

Query: 1216 ETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXE 1037
            ET+AATSRWGNQPS E+ EKMMRD+A+ARHASLV++                       E
Sbjct: 580  ETIAATSRWGNQPSIEEREKMMRDAAIARHASLVKHLEQKLAHAKGKIKKAENLLRKLQE 639

Query: 1036 CLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKI 857
              EP+ELPTDLE +S EERFLFRKMGLSMKP+LLLGRR +FDGTIEN+HLHWK+RELVKI
Sbjct: 640  NREPSELPTDLEILSAEERFLFRKMGLSMKPFLLLGRRDVFDGTIENIHLHWKYRELVKI 699

Query: 856  FVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKR 677
              ER++ +Q+K IA++LEAESGG+LVS+DKTT+GYAII+YRGKNYQRP   RPKNLLTKR
Sbjct: 700  IAERRNAAQIKHIAVTLEAESGGLLVSIDKTTQGYAIILYRGKNYQRPSEFRPKNLLTKR 759

Query: 676  QALARSIELQRREALKHHILELQERFEKLKSELEKMKNVNEIDGENLYSRMD 521
            QALARSIELQRREALKHHI ELQ++ + LKS+LE M  V EID E LYSR+D
Sbjct: 760  QALARSIELQRREALKHHITELQDKLQNLKSDLEDMNMVEEIDEETLYSRLD 811


>ref|XP_008242355.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Prunus mume]
            gi|645274471|ref|XP_008242356.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Prunus mume]
          Length = 930

 Score =  858 bits (2216), Expect = 0.0
 Identities = 490/907 (54%), Positives = 611/907 (67%), Gaps = 38/907 (4%)
 Frame = -3

Query: 3034 LYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHTRQ--------FNPTKKKRKPKPSFFE 2879
            L FL  H QTHS      L+FR  C    VQ+ T++        F  T+KKRKPKPSFF 
Sbjct: 26   LCFLLLHHQTHSFKSCRALRFRVSCK--TVQVDTQEQPQRIKVAFEATRKKRKPKPSFFV 83

Query: 2878 EIRDKWSVKPTSLREKLPWKEQ-----QQREPIKEVQEQSQKQFSASEL----ETDKNY- 2729
            +I+DKWS+K  S R+K PW++Q     +++E ++E  E+ +++    ++    E  K Y 
Sbjct: 84   QIQDKWSMKVNSPRDKFPWQKQNELVQEEKEEVEEDDEEEEEEVFEPKISKQEEGQKCYG 143

Query: 2728 -----PVSDPVSFGFSNRIISPPWVHGSNPTKTQFDFETRNSQDSCEKGEIVNGFGRNSE 2564
                 PV+  VSF   NRII  PW HGS     Q D E   SQ S  +G+ ++GF  +SE
Sbjct: 144  ERVAEPVNQKVSFSLPNRIIYAPWAHGSKRITPQVDSEPETSQHSGAQGKNLDGFAGHSE 203

Query: 2563 -KNYHNVGQESKNLER--GSNYNGECKEKIQISSNPVGLQEKNEAELVGADNGVSFNGKP 2393
                    ++ K+ ER   SN   E +   ++    +G+ +K E  +    NGVS +   
Sbjct: 204  IDTTSGAVKKEKSFERRFDSNRKLERERAGEVGIISIGVSKKEEKMISKGLNGVSLD--- 260

Query: 2392 SRVDREFHSFEGSSDDR---------DSMRLPWKRESDVKSVEGE--RFKNSSTKLAEKL 2246
                 E  S +G +D++          S+RLPWKRES++ S EG+  R + S+T+LAE++
Sbjct: 261  -----ETLSGDGENDEKVENFVYSGSGSIRLPWKRESELSSEEGDKTRKRRSNTELAERM 315

Query: 2245 IPENELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRT 2066
            +P++EL+RLRNV+LRM+ERIKVG  G+TQ LV++IHEKWK DEVVKLKFE P ++NM+RT
Sbjct: 316  LPDHELRRLRNVSLRMLERIKVGVTGITQALVNTIHEKWKIDEVVKLKFEEPFSLNMKRT 375

Query: 2065 HEILEIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQR 1886
            HEILE +TGGLVIWRSGSSVVLYRGM+Y L CVQ+Y +Q+  +      S+    +    
Sbjct: 376  HEILESKTGGLVIWRSGSSVVLYRGMTYNLPCVQTYAKQSQTNSHMMQHSENATSDSMHN 435

Query: 1885 VEFKGSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXX 1706
            V  K   RTT+  +  SA  LKDLS++ELM L++LNHLL+ELGPRFKDW GR        
Sbjct: 436  VGVKDVSRTTDFPSLESAEYLKDLSQQELMALNDLNHLLDELGPRFKDWIGREPLPVDAD 495

Query: 1705 XXXXXXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVK 1526
                  PGY+TPFRLLPY  R  LRDKDMT +RR ART+PPHFALGRNRELQGLA AM+K
Sbjct: 496  LLPSVVPGYKTPFRLLPYGFRPCLRDKDMTKYRRLARTVPPHFALGRNRELQGLANAMMK 555

Query: 1525 LWEKSAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEA 1346
            LWEKSAIAKIAIKRGVQNT NERMAEELK LTGGTLLSRNKD+IVFYRGND+LP VVT  
Sbjct: 556  LWEKSAIAKIAIKRGVQNTCNERMAEELKRLTGGTLLSRNKDFIVFYRGNDYLPSVVTGV 615

Query: 1345 LVEAQKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSED 1166
            L E +KL  L+QD+EEQARQ A+  + SN++A+K   VAGTLAETMAAT+ W NQ + + 
Sbjct: 616  LEERRKLRDLQQDEEEQARQMAADYVVSNSEASKRQFVAGTLAETMAATTHWRNQLTIDR 675

Query: 1165 IEKMMRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDE 986
            +EKM RDS  AR ASLVR+                       E LEP++LP DLET++DE
Sbjct: 676  VEKMRRDSTFARRASLVRHLEKKLALAKGKLRKAEKALARVQESLEPSDLPDDLETLTDE 735

Query: 985  ERFLFRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISL 806
            +RFLFRK+GLSMKP+LLLGRR ++ GTIENMHLHWK +ELVKI V  KSF QVK IAISL
Sbjct: 736  DRFLFRKIGLSMKPFLLLGRREVYSGTIENMHLHWKHKELVKIIVRGKSFEQVKHIAISL 795

Query: 805  EAESGGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKH 626
            EAESGG+LVSLDKTTKGYAII+YRGKNYQ P  +RP+NLLT+RQALARS+ELQRREALKH
Sbjct: 796  EAESGGVLVSLDKTTKGYAIILYRGKNYQCPLPLRPRNLLTRRQALARSVELQRREALKH 855

Query: 625  HILELQERFEKLKSELEKMKNVNEI-DGENLYSRMDNAYSSXXXXXXXXXXXEAFPYVYD 449
            HI +LQE+   LKSELE+M N   + DG  L+S  D+               EA+  VYD
Sbjct: 856  HISDLQEKVGLLKSELEEMGNGRMVDDGRTLHSTGDDPL-IPSDDSEEDEGEEAYLEVYD 914

Query: 448  SENEDVN 428
            S NED N
Sbjct: 915  SGNEDNN 921


>ref|XP_009602353.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Nicotiana tomentosiformis]
          Length = 830

 Score =  855 bits (2210), Expect = 0.0
 Identities = 469/833 (56%), Positives = 580/833 (69%), Gaps = 2/833 (0%)
 Frame = -3

Query: 3013 PQTHSSIRFLTLKFRPCCSHHAVQLHTR-QFNPTKKKRKPKPSFFEEIRDKWSVKPTSLR 2837
            P+  S   F     R  CS   +      Q N +KKK+KP+PSF E++++KWSVK TSLR
Sbjct: 33   PKIQSLHNFRAKNIRIYCSSQTIHSDKENQTNQSKKKQKPRPSFLEQVQNKWSVKTTSLR 92

Query: 2836 EKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPVSDPVSFGFSNRIISPPWVHGSN 2657
            EK PW+E      I+EV EQ   QFS ++  T++N  V++ VS G   ++   PWVHG+ 
Sbjct: 93   EKFPWQELNSVS-IEEVAEQDL-QFSVAK--TEENPVVNESVSSGSRIKVNLAPWVHGNQ 148

Query: 2656 PTKTQFD-FETRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESKNLERGSNYNGECKEKIQ 2480
            P K+Q D FE RN             F +N+  N+ N   +  ++E G +     ++ I+
Sbjct: 149  PKKSQLDSFEARN-------------FEKNA--NWENNVSQELDIEPGKD-----EKDIK 188

Query: 2479 ISSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDVK 2300
            + +  +   E  +      + G SF                 S  ++S+RLPW+ E DV 
Sbjct: 189  LETKVLHRYEVQD------NKGGSFT---------------ESSSKNSVRLPWQGERDVG 227

Query: 2299 SVEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKED 2120
             V G++ + S+ ++AEK+IPE +LK+LRN ALR+VERIKVG+AG+TQELVDSIHEKWK D
Sbjct: 228  PVGGDKLRKSNAEMAEKMIPEPQLKKLRNAALRLVERIKVGSAGITQELVDSIHEKWKVD 287

Query: 2119 EVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLV 1940
            E+VKL+FEGPP+ NM+RTHEILE RTGGLVIWRSGSS+VLYRG+SYKL CVQS+T +N  
Sbjct: 288  EIVKLRFEGPPSHNMKRTHEILEHRTGGLVIWRSGSSIVLYRGISYKLPCVQSFTTRN-D 346

Query: 1939 DMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNEL 1760
            D+  S SSK    +          V++    T        +LS  E+MDLSELN LL+E+
Sbjct: 347  DIDESESSKNANGQ-------SFGVKSLNEATERPRNGFSNLSGAEIMDLSELNMLLDEV 399

Query: 1759 GPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPH 1580
            GPRFKDWSGR              PGY  PFR LPY  +  L++K+MTY RRTAR MPPH
Sbjct: 400  GPRFKDWSGREPLPVDADLLPAVVPGYRPPFRRLPYGAKLNLKNKEMTYLRRTARIMPPH 459

Query: 1579 FALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKD 1400
            FALGRNRELQGLA AM KLW ++AIAKIAIKRGV NTSNERMAEELK+LTGGTL+SRNKD
Sbjct: 460  FALGRNRELQGLAAAMAKLWRRNAIAKIAIKRGVHNTSNERMAEELKVLTGGTLVSRNKD 519

Query: 1399 YIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTL 1220
            YIVFYRGNDFLPP VTEALVEA+  +A  QD EEQARQ A+T+I+S+ KA K PL+AGTL
Sbjct: 520  YIVFYRGNDFLPPRVTEALVEAESKSAFLQDQEEQARQRAATLIHSDTKAPKRPLIAGTL 579

Query: 1219 AETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXX 1040
            +ET+AATSRWGNQPS E+ EKMMRD+A+ARHASLV++                       
Sbjct: 580  SETIAATSRWGNQPSIEEREKMMRDAAVARHASLVKHLEQKLAHAKGKIKKAENMLRKLQ 639

Query: 1039 ECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVK 860
            E  EP+ELPTDLE +S EERFLFRKMGLSMKP+LLLGRR +FDGTIEN+HLHWK+RELVK
Sbjct: 640  ENREPSELPTDLEILSAEERFLFRKMGLSMKPFLLLGRRDVFDGTIENIHLHWKYRELVK 699

Query: 859  IFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTK 680
            I  ER++ +Q+K IA++LE ESGG+LVS+DKTT+GYAII+YRGKNYQRP   RPKNLLTK
Sbjct: 700  IIAERRNAAQIKHIAVTLETESGGLLVSIDKTTQGYAIILYRGKNYQRPSEFRPKNLLTK 759

Query: 679  RQALARSIELQRREALKHHILELQERFEKLKSELEKMKNVNEIDGENLYSRMD 521
            RQAL RSIELQRREALKHHI ELQ++ + LKS+LE M  V EID E LYSR+D
Sbjct: 760  RQALTRSIELQRREALKHHITELQDKLQNLKSDLEDMNMVEEIDEETLYSRLD 812


>ref|XP_009602352.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nicotiana tomentosiformis]
          Length = 832

 Score =  855 bits (2210), Expect = 0.0
 Identities = 469/833 (56%), Positives = 580/833 (69%), Gaps = 2/833 (0%)
 Frame = -3

Query: 3013 PQTHSSIRFLTLKFRPCCSHHAVQLHTR-QFNPTKKKRKPKPSFFEEIRDKWSVKPTSLR 2837
            P+  S   F     R  CS   +      Q N +KKK+KP+PSF E++++KWSVK TSLR
Sbjct: 33   PKIQSLHNFRAKNIRIYCSSQTIHSDKENQTNQSKKKQKPRPSFLEQVQNKWSVKTTSLR 92

Query: 2836 EKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPVSDPVSFGFSNRIISPPWVHGSN 2657
            EK PW+E      I+EV EQ   QFS ++  T++N  V++ VS G   ++   PWVHG+ 
Sbjct: 93   EKFPWQELNSVS-IEEVAEQDL-QFSVAK--TEENPVVNESVSSGSRIKVNLAPWVHGNQ 148

Query: 2656 PTKTQFD-FETRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESKNLERGSNYNGECKEKIQ 2480
            P K+Q D FE RN             F +N+  N+ N   +  ++E G +     ++ I+
Sbjct: 149  PKKSQLDSFEARN-------------FEKNA--NWENNVSQELDIEPGKD-----EKDIK 188

Query: 2479 ISSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRDSMRLPWKRESDVK 2300
            + +  +   E  +      + G SF                 S  ++S+RLPW+ E DV 
Sbjct: 189  LETKVLHRYEVQD------NKGGSFT---------------ESSSKNSVRLPWQGERDVG 227

Query: 2299 SVEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKED 2120
             V G++ + S+ ++AEK+IPE +LK+LRN ALR+VERIKVG+AG+TQELVDSIHEKWK D
Sbjct: 228  PVGGDKLRKSNAEMAEKMIPEPQLKKLRNAALRLVERIKVGSAGITQELVDSIHEKWKVD 287

Query: 2119 EVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLV 1940
            E+VKL+FEGPP+ NM+RTHEILE RTGGLVIWRSGSS+VLYRG+SYKL CVQS+T +N  
Sbjct: 288  EIVKLRFEGPPSHNMKRTHEILEHRTGGLVIWRSGSSIVLYRGISYKLPCVQSFTTRN-D 346

Query: 1939 DMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNEL 1760
            D+  S SSK    +          V++    T        +LS  E+MDLSELN LL+E+
Sbjct: 347  DIDESESSKNANGQ-------SFGVKSLNEATERPRNGFSNLSGAEIMDLSELNMLLDEV 399

Query: 1759 GPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPH 1580
            GPRFKDWSGR              PGY  PFR LPY  +  L++K+MTY RRTAR MPPH
Sbjct: 400  GPRFKDWSGREPLPVDADLLPAVVPGYRPPFRRLPYGAKLNLKNKEMTYLRRTARIMPPH 459

Query: 1579 FALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKD 1400
            FALGRNRELQGLA AM KLW ++AIAKIAIKRGV NTSNERMAEELK+LTGGTL+SRNKD
Sbjct: 460  FALGRNRELQGLAAAMAKLWRRNAIAKIAIKRGVHNTSNERMAEELKVLTGGTLVSRNKD 519

Query: 1399 YIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTL 1220
            YIVFYRGNDFLPP VTEALVEA+  +A  QD EEQARQ A+T+I+S+ KA K PL+AGTL
Sbjct: 520  YIVFYRGNDFLPPRVTEALVEAESKSAFLQDQEEQARQRAATLIHSDTKAPKRPLIAGTL 579

Query: 1219 AETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXX 1040
            +ET+AATSRWGNQPS E+ EKMMRD+A+ARHASLV++                       
Sbjct: 580  SETIAATSRWGNQPSIEEREKMMRDAAVARHASLVKHLEQKLAHAKGKIKKAENMLRKLQ 639

Query: 1039 ECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVK 860
            E  EP+ELPTDLE +S EERFLFRKMGLSMKP+LLLGRR +FDGTIEN+HLHWK+RELVK
Sbjct: 640  ENREPSELPTDLEILSAEERFLFRKMGLSMKPFLLLGRRDVFDGTIENIHLHWKYRELVK 699

Query: 859  IFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTK 680
            I  ER++ +Q+K IA++LE ESGG+LVS+DKTT+GYAII+YRGKNYQRP   RPKNLLTK
Sbjct: 700  IIAERRNAAQIKHIAVTLETESGGLLVSIDKTTQGYAIILYRGKNYQRPSEFRPKNLLTK 759

Query: 679  RQALARSIELQRREALKHHILELQERFEKLKSELEKMKNVNEIDGENLYSRMD 521
            RQAL RSIELQRREALKHHI ELQ++ + LKS+LE M  V EID E LYSR+D
Sbjct: 760  RQALTRSIELQRREALKHHITELQDKLQNLKSDLEDMNMVEEIDEETLYSRLD 812


>ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
            gi|223546576|gb|EEF48074.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 930

 Score =  841 bits (2173), Expect = 0.0
 Identities = 458/858 (53%), Positives = 582/858 (67%), Gaps = 26/858 (3%)
 Frame = -3

Query: 3010 QTHSSIRFLTLKFRPCCSHHAVQLHTRQFNPTKKKRKPKPSFFEEIRDKWSVKPTSLREK 2831
            Q  S   F    F   CS+      + Q + TK KRKP+PSFFE+IRDKWS+K  S R+ 
Sbjct: 50   QARSHSPFKAFNFETNCSYS----RSIQVSATKTKRKPRPSFFEQIRDKWSLKVPSTRDT 105

Query: 2830 LPWKEQQQREPIKEVQEQSQKQF----------SASELETDKNYPVSDPVSFGFSNRIIS 2681
             PW+E +Q++  +   +  +++           S +E++ + +    D VS    N + +
Sbjct: 106  FPWQEPEQQQEHQGQGKNDEEEIERCEISGVTLSKAEIDANPSSIDDDSVSVSLPNHLTT 165

Query: 2680 PPWVHGSNPTKTQFDFETRNSQDSCEKG-----EIVNGFGRN--------SEKNYHNVGQ 2540
             PWVHG+ P K  F    +  ++  +       +IV    +          E N  +V  
Sbjct: 166  APWVHGTRPKKNHFSSRPKIGENVVQNDVHTVVDIVENLEKEVTCNDKFKKEDNILHV-D 224

Query: 2539 ESKNLERGSNYNGECKE-KIQISSNPVGLQEKNEAELVGADNGVSF-NGKPSRVDREFHS 2366
             ++ L +  NY+ + KE K+Q+    V L+  NE          S+ N KP   +  +  
Sbjct: 225  NAERLVKEVNYDKKFKEAKVQVGGFSVELKRDNEIARAKYSKSPSYINEKPFGANGGYGV 284

Query: 2365 FEGSSDDRDSMRLPWKRESDVKSVEGE-RFKNSSTKLAEKLIPENELKRLRNVALRMVER 2189
                 D+  S+ LPW++E  ++SVEG  R K S+T+LAE+++PE+ELKRLRNVALRM ER
Sbjct: 285  QVSYDDNSSSIELPWEKERVMESVEGYLRGKRSNTELAERMLPEHELKRLRNVALRMYER 344

Query: 2188 IKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSS 2009
            IKVGAAG+ Q+LVD++HEKW+ DEVVKLKFE P + NMRRTHEILE RTGGLVIWRSGSS
Sbjct: 345  IKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSFNMRRTHEILENRTGGLVIWRSGSS 404

Query: 2008 VVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAG 1829
            VVLYRG+SYKLHCV+S+++Q+    +     +E     T  +  K  + TTES     A 
Sbjct: 405  VVLYRGISYKLHCVRSFSKQDEAGKEILAHPEEVTSNATLNIGVKHFIGTTESYIPDRAK 464

Query: 1828 RLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYR 1649
             LKDLS +EL D +ELN  L+ELGPRF+DW GR              PGY+ PFRLLPY 
Sbjct: 465  YLKDLSREELTDFTELNQFLDELGPRFEDWCGREPLPVDADLLLAVDPGYKPPFRLLPYG 524

Query: 1648 LRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNT 1469
            +RH L DK+MT FRR ART+PPHFALGRNR+LQGLA A+VKLWE+SAI KIAIKRGVQNT
Sbjct: 525  VRHCLTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNT 584

Query: 1468 SNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQAR 1289
             NERMAEELK+LTGG LLSRNK+YIVFYRGNDFLPP + + L E +KLT L+QD+EEQAR
Sbjct: 585  RNERMAEELKVLTGGILLSRNKEYIVFYRGNDFLPPAIVKTLKERKKLTYLKQDEEEQAR 644

Query: 1288 QNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRY 1109
            Q A   + S+AK +K PLVAGTLAET+AATS W +Q  S DI++M+R++ LA+ ASLV++
Sbjct: 645  QMALASVESSAKTSKVPLVAGTLAETVAATSHWRDQRGSPDIDEMLREAVLAKRASLVKH 704

Query: 1108 XXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLG 929
                                   E L+P+ LPTDLETISDEERFLFRK+GLSMKPYL LG
Sbjct: 705  LENKLALAKGKLRKAEKALAKVHEHLDPSGLPTDLETISDEERFLFRKIGLSMKPYLFLG 764

Query: 928  RRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYA 749
            +RG++DGTIENMHLHWK+RELVK+ V  KSF+QVK IAISLEAESGG+LVS+++TTKGYA
Sbjct: 765  KRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKGYA 824

Query: 748  IIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSELEKM 569
            IIVYRGKNY  P+ +RPKNLLTKRQAL RSIELQRREALKHHI +LQER E LK ELE M
Sbjct: 825  IIVYRGKNYLHPEVMRPKNLLTKRQALVRSIELQRREALKHHISDLQERIELLKLELEDM 884

Query: 568  KNVNEIDGENLYSRMDNA 515
            ++  EID + + SR+D++
Sbjct: 885  ESGKEIDVDKMSSRLDDS 902


>gb|KDO48172.1| hypothetical protein CISIN_1g003573mg [Citrus sinensis]
            gi|641829043|gb|KDO48173.1| hypothetical protein
            CISIN_1g003573mg [Citrus sinensis]
            gi|641829044|gb|KDO48174.1| hypothetical protein
            CISIN_1g003573mg [Citrus sinensis]
          Length = 810

 Score =  837 bits (2163), Expect = 0.0
 Identities = 470/831 (56%), Positives = 576/831 (69%), Gaps = 8/831 (0%)
 Frame = -3

Query: 3034 LYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHTRQFNPTKKKRKPKPSFFEEIRDKWSV 2855
            +++L   PQ+  S  F +++   C SH  +Q    Q   T+ KRK KPSFFE+IR KWS 
Sbjct: 19   VHYLPLKPQSQCSNSFRSIRIGICFSHLTIQA---QLGTTRTKRKVKPSFFEQIRHKWSH 75

Query: 2854 KPTSLREKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPV-SDPVSFGFSNRIISP 2678
            K  S REK PW+E+++ E  +EVQ         +E ETD    V S+P S    NR +S 
Sbjct: 76   KVISPREKFPWQEEEEEE--EEVQ---------NEPETDVESRVRSEPFSSALPNRFVSA 124

Query: 2677 PWVHGSNPTKTQFDFE----TRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESK--NLERG 2516
            PW+HG++  + +FD      T   +D  + G +    G   +   H+  +E     L++ 
Sbjct: 125  PWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLL----GSFEKTVVHSAVKEKTVIELDKE 180

Query: 2515 SNYNGECK-EKIQISSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRD 2339
             +YN E K ++++I +NP+ L +    E VG+ N     G        +H  +      D
Sbjct: 181  GDYNKELKTDEVKIDANPIELSKDRHRE-VGSLNQKQIKG--------YHEVD------D 225

Query: 2338 SMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQ 2159
               LPWKR +D       R + S+T+LAEK+IPE+EL+RLRN++LRM+ER KVG+AG+TQ
Sbjct: 226  PSVLPWKRNTD-------RRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQ 278

Query: 2158 ELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYK 1979
             LVDSIHEKWK DEVVKLKFE P ++ M+RTHEILE RTGGLVIWRSGSSVVL+RGM+YK
Sbjct: 279  ALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYK 338

Query: 1978 LHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDLSEKEL 1799
            L CVQS+T+ N     ++  +++  +EV + V         ES    SA  L++LS++EL
Sbjct: 339  LPCVQSFTKHN-----HTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEEL 393

Query: 1798 MDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDM 1619
            MDL ELN+LL+ELGPRFKDW GR              P Y+ P RLLPY ++ GLRD + 
Sbjct: 394  MDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCET 453

Query: 1618 TYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELK 1439
            T FRR AR  PPHFALGRNRELQGLA AMVKLWEKSAIAKIAIKR V NT NERMAEELK
Sbjct: 454  TEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELK 513

Query: 1438 ILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSN 1259
             LTGGTLL RNKDYIVFYRGNDFLPPVVT+A+ E  KLT +RQD+EE+AR  AS +I   
Sbjct: 514  KLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELK 573

Query: 1258 AKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXX 1079
            AK   G LVAGTLAET+AATSRWG QPS ED+EKMMRDS L+RHASL+RY          
Sbjct: 574  AKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKR 633

Query: 1078 XXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIE 899
                         E L+PAELP+DLETI++EERFL RKMGLSMKPYLLLGRRGI+DGTIE
Sbjct: 634  KLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIE 693

Query: 898  NMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQ 719
            NMHLHWK+RELVKI V+ KSF+QVKQIAISLEAESGG+LVSLDKT KG AIIVYRGKNY 
Sbjct: 694  NMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYV 753

Query: 718  RPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSELEKMK 566
            RP  +RP+NLLT+RQALARS+ELQRRE LKHHIL+LQER E +KSELE+++
Sbjct: 754  RPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELEEIE 804


>ref|XP_006475466.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Citrus sinensis]
            gi|568843115|ref|XP_006475467.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Citrus sinensis]
            gi|568843117|ref|XP_006475468.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X3 [Citrus sinensis]
            gi|568843119|ref|XP_006475469.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X4 [Citrus sinensis]
          Length = 812

 Score =  836 bits (2159), Expect = 0.0
 Identities = 469/831 (56%), Positives = 575/831 (69%), Gaps = 8/831 (0%)
 Frame = -3

Query: 3034 LYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHTRQFNPTKKKRKPKPSFFEEIRDKWSV 2855
            +++L   PQ+  S  F +++   C SH  +Q    Q   T+ KRK KPSFFE+IR KWS 
Sbjct: 21   VHYLPLKPQSQCSNSFRSIRIGICFSHLTIQA---QLGTTRTKRKVKPSFFEQIRHKWSH 77

Query: 2854 KPTSLREKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPV-SDPVSFGFSNRIISP 2678
            K  S REK PW+E+++ E  +EVQ         +E ETD    V S+P S    NR +S 
Sbjct: 78   KVISPREKFPWQEEEEEE--EEVQ---------NEPETDVESRVRSEPFSSALPNRFVSA 126

Query: 2677 PWVHGSNPTKTQFDFE----TRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESK--NLERG 2516
            PW+HG++  + +FD      T   +D  + G +    G   +   H+  +E     L++ 
Sbjct: 127  PWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLL----GSFEKTVVHSAVKEKTVIELDKE 182

Query: 2515 SNYNGECK-EKIQISSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRD 2339
             +YN E K ++++I +NP+ L +    E VG+ N     G        +H  +      D
Sbjct: 183  GDYNKELKTDEVKIDANPIELSKDRHRE-VGSLNQKQIKG--------YHEVD------D 227

Query: 2338 SMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQ 2159
               LPWKR +D       R + S+T+LAEK+IPE+EL+RLRN++LRM+ER KVG+AG+TQ
Sbjct: 228  PSVLPWKRNTD-------RRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQ 280

Query: 2158 ELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYK 1979
             LVDSIHEKWK DEVVKLKFE P ++ M+RTHEILE RTGGLVIWRSGSSVVL+RGM+YK
Sbjct: 281  ALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYK 340

Query: 1978 LHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDLSEKEL 1799
            L CVQS+T+ N     ++  +++  +EV + V         ES    SA  L++LS++EL
Sbjct: 341  LPCVQSFTKHN-----HTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEEL 395

Query: 1798 MDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDM 1619
            MDL ELN+LL+ELGPRFKDW GR              P Y+ P RLLPY ++ GLRD + 
Sbjct: 396  MDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCET 455

Query: 1618 TYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELK 1439
            T FRR AR  PPHFALGRNRELQGLA AMVKLWEKSAIAKIAIKR V NT NERMAEELK
Sbjct: 456  TEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELK 515

Query: 1438 ILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSN 1259
             LTGGTLL RNKDYIVFYRGNDFLPPVVT+A+ E  KLT +RQD+EEQAR  AS +I   
Sbjct: 516  KLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEEQARHVASALIELK 575

Query: 1258 AKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXX 1079
            AK   G LVAGTLAET+AATSRWG QPS ED+EKMMRDS L+RHASL+RY          
Sbjct: 576  AKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKR 635

Query: 1078 XXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIE 899
                         E L+PAELP+DLETI++EERFL RKMGLSMKPYLLLGRRGI+DGTIE
Sbjct: 636  KLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIE 695

Query: 898  NMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQ 719
            NMHLHWK+RELVKI V+ KSF+QVKQIAISLEAESGG+LVSLDKT KG AIIVYRGKNY 
Sbjct: 696  NMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYV 755

Query: 718  RPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSELEKMK 566
            RP  +RP+NLL +RQALARS+ELQRRE LKHHIL+L+ER E +KSELE+++
Sbjct: 756  RPLKLRPQNLLNRRQALARSVELQRREGLKHHILDLEERIELVKSELEEIE 806


>ref|XP_006451488.1| hypothetical protein CICLE_v10007477mg [Citrus clementina]
            gi|557554714|gb|ESR64728.1| hypothetical protein
            CICLE_v10007477mg [Citrus clementina]
          Length = 810

 Score =  836 bits (2159), Expect = 0.0
 Identities = 469/831 (56%), Positives = 575/831 (69%), Gaps = 8/831 (0%)
 Frame = -3

Query: 3034 LYFLTHHPQTHSSIRFLTLKFRPCCSHHAVQLHTRQFNPTKKKRKPKPSFFEEIRDKWSV 2855
            +++L   PQ+  S  F +++   C SH  +Q    Q   T+ KRK KPSFFE+IR KWS 
Sbjct: 19   VHYLPLKPQSQCSNSFRSIRIGICFSHLTIQA---QLGTTRTKRKVKPSFFEQIRHKWSH 75

Query: 2854 KPTSLREKLPWKEQQQREPIKEVQEQSQKQFSASELETDKNYPV-SDPVSFGFSNRIISP 2678
            K  S REK PW+E+++ E  +EVQ         +E ETD    V S+P S    NR +S 
Sbjct: 76   KVISPREKFPWQEEEEEE--EEVQ---------NEPETDVESRVRSEPFSSALPNRFVSA 124

Query: 2677 PWVHGSNPTKTQFDFE----TRNSQDSCEKGEIVNGFGRNSEKNYHNVGQESK--NLERG 2516
            PW+HG++  + +FD      T   +D  + G +    G   +   H+  +E     L++ 
Sbjct: 125  PWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLL----GSFEKTVVHSAVKEKTVIELDKE 180

Query: 2515 SNYNGECK-EKIQISSNPVGLQEKNEAELVGADNGVSFNGKPSRVDREFHSFEGSSDDRD 2339
             +YN E K ++++I +NP+ L +    E VG+ N     G        +H  +      D
Sbjct: 181  GDYNKELKTDEVKIDANPIELSKDRHRE-VGSLNQKQIKG--------YHEVD------D 225

Query: 2338 SMRLPWKRESDVKSVEGERFKNSSTKLAEKLIPENELKRLRNVALRMVERIKVGAAGVTQ 2159
               LPWKR +D       R + S+T+LAEK+IPE+EL+RLRN++LRM+ER KVG+AG+TQ
Sbjct: 226  PSVLPWKRNTD-------RRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQ 278

Query: 2158 ELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHEILEIRTGGLVIWRSGSSVVLYRGMSYK 1979
             LVDSIHEKWK DEVVKLKFE P ++ M+RTHEILE RTGGLVIWRSGSSVVL+RGM+YK
Sbjct: 279  ALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYK 338

Query: 1978 LHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVEFKGSVRTTESITTGSAGRLKDLSEKEL 1799
            L CVQS+T+ N     ++  +++  +EV + V         ES    SA  L++LS++EL
Sbjct: 339  LPCVQSFTKHN-----HTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEEL 393

Query: 1798 MDLSELNHLLNELGPRFKDWSGRXXXXXXXXXXXXXXPGYETPFRLLPYRLRHGLRDKDM 1619
            MDL ELN+LL+ELGPRFKDW GR              P Y+ P RLLPY ++ GLRD + 
Sbjct: 394  MDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCET 453

Query: 1618 TYFRRTARTMPPHFALGRNRELQGLAMAMVKLWEKSAIAKIAIKRGVQNTSNERMAEELK 1439
            T FRR AR  PPHFALGRNRELQGLA AMVKLWEKSAIAKIAIKR V NT NERMAEELK
Sbjct: 454  TEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELK 513

Query: 1438 ILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALVEAQKLTALRQDDEEQARQNASTMIYSN 1259
             LTGGTLL RNKDYIVFYRGNDFLPPVVT+A+ E  KLT +RQD+EEQAR  AS +I   
Sbjct: 514  KLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEEQARHVASALIELK 573

Query: 1258 AKAAKGPLVAGTLAETMAATSRWGNQPSSEDIEKMMRDSALARHASLVRYXXXXXXXXXX 1079
            AK   G LVAGTLAET+AATSRWG QPS ED+EKMMRDS L+RHASL+RY          
Sbjct: 574  AKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKR 633

Query: 1078 XXXXXXXXXXXXXECLEPAELPTDLETISDEERFLFRKMGLSMKPYLLLGRRGIFDGTIE 899
                         E L+PAELP+DLETI++EERFL RKMGLSMKPYLLLGRRGI+DGTIE
Sbjct: 634  KLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIE 693

Query: 898  NMHLHWKFRELVKIFVERKSFSQVKQIAISLEAESGGILVSLDKTTKGYAIIVYRGKNYQ 719
            NMHLHWK+RELVKI V+ KSF+QVKQIAISLEAESGG+LVSLDKT KG AIIVYRGKNY 
Sbjct: 694  NMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYV 753

Query: 718  RPDAVRPKNLLTKRQALARSIELQRREALKHHILELQERFEKLKSELEKMK 566
            RP  +RP+NLL +RQALARS+ELQRRE LKHHIL+L+ER E +KSELE+++
Sbjct: 754  RPLKLRPQNLLNRRQALARSVELQRREGLKHHILDLEERIELVKSELEEIE 804


>ref|XP_012449426.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii]
          Length = 883

 Score =  835 bits (2158), Expect = 0.0
 Identities = 472/879 (53%), Positives = 604/879 (68%), Gaps = 13/879 (1%)
 Frame = -3

Query: 3103 MVLTPFPLDLYXXXXXXXXXXXSLYFLTHHPQTHSSIRFLTLKFRP-CCSHHAVQLHTRQ 2927
            M L+PFP+              SLY+L    +T ++  F  LKF+  C SH  V++    
Sbjct: 1    MALSPFPVT---HQACPLSSSHSLYYLILQTKTQNN-SFRALKFKSYCVSHQTVKVG--- 53

Query: 2926 FNPTKKKRKPKPSFFEEIRDKWSVKP-TSLREKLPWKEQQQREPIKEVQEQSQKQFSASE 2750
             + +KKKRKPKPSF ++I+DKWS KP  S REKLPW+E+++ E  +EV+++   + +ASE
Sbjct: 54   IDISKKKRKPKPSFLDQIKDKWSQKPIISTREKLPWQEKEELEEQEEVEKEQTFEATASE 113

Query: 2749 LETDKN--YPVSDPVSFGFSNRIISPPWVHGSNPTKTQFDFETRNSQDSCEKGEIVNGFG 2576
             E+D++    VSDPVS    +++I+ PW HG    +  FDF   + +           F 
Sbjct: 114  TESDEDPRVEVSDPVSIPLPSQVIAAPWSHGRKFNEPHFDFVPESPE-----------FE 162

Query: 2575 RNSEKNYHNVGQESKNLERGSNYNGECKEKIQISSNPVGLQEKNEAELVGADNGVSFN-G 2399
               E ++ N        E+  ++ G+  EK ++                  D  +SFN  
Sbjct: 163  SQIEVSFAN--------EKPIDFVGDRIEKPEL-----------------LDEEISFNKQ 197

Query: 2398 KP-SRVDREFHSFEGSSD---DRDSMRLPWKRESDVKSVEGE---RFKNSSTKLAEKLIP 2240
            KP     ++  + EG ++    R ++ +     ++  S+EG+     K S+T++AE++IP
Sbjct: 198  KPILSAHKKIAAVEGINEVVSSRQNLEVSTSGSNEGGSIEGDGKRGKKKSNTEMAERMIP 257

Query: 2239 ENELKRLRNVALRMVERIKVGAAGVTQELVDSIHEKWKEDEVVKLKFEGPPAMNMRRTHE 2060
            E+EL+RLRN+ALRMVER KVGAAG+TQ LV+ I+E+WK DEV+KLKFE P ++NM+RTHE
Sbjct: 258  EHELRRLRNIALRMVERTKVGAAGITQALVEHIYERWKLDEVIKLKFEEPLSLNMKRTHE 317

Query: 2059 ILEIRTGGLVIWRSGSSVVLYRGMSYKLHCVQSYTEQNLVDMKNSHSSKEFVHEVTQRVE 1880
            +LE RTGGLVIWRSG SVVLYRGM+YKLHCVQSY+ Q+  D     S+ + +   T+ + 
Sbjct: 318  VLEKRTGGLVIWRSGGSVVLYRGMAYKLHCVQSYSGQDQADT----SALDVLTTNTETMV 373

Query: 1879 FKGSVRTTESITTGSAGRLKDLSEKELMDLSELNHLLNELGPRFKDWSGRXXXXXXXXXX 1700
             K SVRT ES    S   LKDLS++ELMDL ELNHLL+ELGPR+KDWSGR          
Sbjct: 374  VKDSVRTEESFMLSSLEYLKDLSKEELMDLCELNHLLDELGPRYKDWSGREPLPVDADLL 433

Query: 1699 XXXXPGYETPFRLLPYRLRHGLRDKDMTYFRRTARTMPPHFALGRNRELQGLAMAMVKLW 1520
                PGY+ PFR LPY +R  L+D++MT FRR AR+MPPHFALGRNRELQGLA A+VKLW
Sbjct: 434  PPVVPGYQLPFRRLPYGVRQCLKDREMTTFRRLARSMPPHFALGRNRELQGLAQAIVKLW 493

Query: 1519 EKSAIAKIAIKRGVQNTSNERMAEELKILTGGTLLSRNKDYIVFYRGNDFLPPVVTEALV 1340
            E++AIAKIA+KRGV+NT NERMAEELK LTGGTLLSRNK++IVFYRGNDFLPPVVT  L 
Sbjct: 494  ERTAIAKIAVKRGVENTRNERMAEELKRLTGGTLLSRNKEFIVFYRGNDFLPPVVTNTLK 553

Query: 1339 EAQKLTALRQDDEEQARQNASTMIYSNAKAAKGPLVAGTLAETMAATSRWGNQPSSEDIE 1160
            E QK   LRQ++EE+AR  A  ++ SN KA+  PLVAGTLAET AATSRWG+QPS +++E
Sbjct: 554  EMQKSRNLRQEEEEEARGRALALVGSNVKASTLPLVAGTLAETTAATSRWGHQPSPDEVE 613

Query: 1159 KMMRDSALARHASLVRYXXXXXXXXXXXXXXXXXXXXXXXECLEPAELPTDLETISDEER 980
            +M R+SAL + ASLVR+                       E L+P +LPTDLET+S+EER
Sbjct: 614  EMKRNSALTQQASLVRHLEKKLAHAKGKLTKANKALAKVQEHLDPTDLPTDLETLSEEER 673

Query: 979  FLFRKMGLSMKPYLLLGRRGIFDGTIENMHLHWKFRELVKIFVERKSFSQVKQIAISLEA 800
             LFRK+GLSMKPYLLLG+RG++DGTIENMHLHWK+RELVKI V+R+S +QVK IAISLEA
Sbjct: 674  ILFRKIGLSMKPYLLLGKRGVYDGTIENMHLHWKYRELVKILVKRESLAQVKHIAISLEA 733

Query: 799  ESGGILVSLDKTTKGYAIIVYRGKNYQRPDAVRPKNLLTKRQALARSIELQRREALKHHI 620
            ESGG+LVSLDKTTKGYAII+YRGKNY RP  VRPKNLLTKRQALARS+ELQR EALKHHI
Sbjct: 734  ESGGVLVSLDKTTKGYAIIIYRGKNYLRPLEVRPKNLLTKRQALARSVELQRCEALKHHI 793

Query: 619  LELQERFEKLKSELEKMKNVNEIDGENL-YSRMDNAYSS 506
              L E+ E +KSELE+MK  NE+   N  YSR++ A  S
Sbjct: 794  SYLLEKIELMKSELEEMKAGNEVGAVNTPYSRLNEALLS 832