BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00008203
         (2648 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   667   0.0  
ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III s...   631   0.0  
ref|XP_009800353.1| PREDICTED: DNA-directed RNA polymerase III s...   637   0.0  
ref|XP_009610317.1| PREDICTED: DNA-directed RNA polymerase III s...   640   0.0  
ref|XP_009610319.1| PREDICTED: DNA-directed RNA polymerase III s...   632   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   635   0.0  
ref|XP_010033188.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   609   0.0  
gb|KCW52757.1| hypothetical protein EUGRSUZ_J02108 [Eucalyptus g...   609   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   633   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   614   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   615   0.0  
gb|KDO73040.1| hypothetical protein CISIN_1g000828mg [Citrus sin...   612   0.0  
ref|XP_008222562.1| PREDICTED: DNA-directed RNA polymerase III s...   603   0.0  
ref|XP_012064930.1| PREDICTED: DNA-directed RNA polymerase III s...   588   0.0  
ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III s...   600   0.0  
ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III s...   600   0.0  
gb|KDP44150.1| hypothetical protein JCGZ_05617 [Jatropha curcas]      588   0.0  
ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   600   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   600   0.0  
ref|XP_010092991.1| DNA-directed RNA polymerase III subunit RPC1...   619   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Vitis
            vinifera]
          Length = 1383

 Score =  667 bits (1722), Expect(2) = 0.0
 Identities = 362/519 (69%), Positives = 413/519 (79%), Gaps = 1/519 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            L+KALEDLS+ YD TVRNA+G IVQF+YGDDGMDP++MEGKDG PLNFNRLF KVKATCP
Sbjct: 872  LMKALEDLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKDGFPLNFNRLFLKVKATCP 931

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
            AG++AS+   +I   V KRL EH+ TS  GCS AFK ++  FLE+C ++F++TR AL + 
Sbjct: 932  AGENASLSALQIEETV-KRLKEHN-TSAEGCSDAFKTNLSGFLEECKEKFKNTREALGLH 989

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
             +          E  A+ ISG+TS+QL+VFL+TCISRY LKR               GEP
Sbjct: 990  GEHVGEENLDIQEKFAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEP 1049

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITA LEC++  KTA MVKGR
Sbjct: 1050 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGR 1109

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKEQ 933
            IE+T LGQVAKSIKIVLT+RLA I V LDME IQASQLSID++ V+ESILR  +IKLK+Q
Sbjct: 1110 IERTTLGQVAKSIKIVLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQ 1169

Query: 932  HVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVINXXXXXXXXXXX 753
            H+KVLD  KLEV PQ D++ +HFELH+LKN LPTVVVKGI TVERAVIN           
Sbjct: 1170 HIKVLDAGKLEVHPQGDRSTIHFELHALKNLLPTVVVKGIETVERAVIN------KDNKV 1223

Query: 752  XYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKSHGMT 573
             YNLLVEGTGL+ VMGTEGV G +TTSNHI+EVQQTLG           IQYTM SHGM+
Sbjct: 1224 KYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMS 1283

Query: 572  IDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRDDKIE 393
            ID+RHMMLLADLMTF+GEVLGITRFGIQKM  SVLMLASFEKTADHLFNASV+GRDDKIE
Sbjct: 1284 IDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIE 1343

Query: 392  GVSECIIMGIPMQIGTGILKVRQRVPPV-QLSKGLEPLI 279
            GVSECIIMGIPMQ+GTGILKVRQR+  V +LS GL+P+I
Sbjct: 1344 GVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLDPII 1382



 Score =  484 bits (1246), Expect(2) = 0.0
 Identities = 234/271 (86%), Positives = 251/271 (92%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDPETMCPNDGFVYFRNSELVSGQLG 2468
            LWTGKQLF+VLLRPHA++RVYLNLTV EKTYNK    ETMCP+DGFVYFRNSEL+SGQLG
Sbjct: 589  LWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLG 648

Query: 2467 KATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESLND 2288
            KATLGNGNKDGL+SVLLRDYN+HAAA CMNRLAKLSARWIGN+GFSIGIDDVQPG  LND
Sbjct: 649  KATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLND 708

Query: 2287 SKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMKEL 2108
             K  RI EGY  C ELI+ YN+G+L LQPGC+AAQTLEAEITGVLN IRET ANVCM+EL
Sbjct: 709  QKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEEL 768

Query: 2107 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 1928
            HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPRKSKTP AK
Sbjct: 769  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAK 828

Query: 1927 GFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            GFVA+SFY+GLTATEFFFHTMGGREGLVDTA
Sbjct: 829  GFVASSFYTGLTATEFFFHTMGGREGLVDTA 859


>ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nelumbo
            nucifera]
          Length = 1392

 Score =  631 bits (1628), Expect(2) = 0.0
 Identities = 345/522 (66%), Positives = 402/522 (77%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDL+V+YD+TVRNASG +VQF+YGDDG+DP+ MEGK G+PLN  R++ K KATCP
Sbjct: 879  LIKALEDLAVYYDDTVRNASGGVVQFLYGDDGLDPANMEGKKGIPLNLERVYLKTKATCP 938

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
            +G +AS+ PSEI   +  R+S +DMT DGGCS AFK  + +F++  I    +TR+AL +D
Sbjct: 939  SGTNASLCPSEIVKILDDRISRYDMTPDGGCSSAFKKLLVDFIQNRISILRNTRKALGLD 998

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
            E+ +    +  LE+IA  ISG+T+QQLKVFLETCISRYHLKR               GEP
Sbjct: 999  EEYAKKDNSDILEHIAANISGITTQQLKVFLETCISRYHLKRIEAGAAIGAIGAQSIGEP 1058

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK ISTPIITATLECDD  K+A +VKG 
Sbjct: 1059 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNISTPIITATLECDDNVKSARIVKGC 1118

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILR--TPKIKLK 939
            IEKT+LG+VAKSIKIV+T R ASIV++LDM RI+A+QL I A +VKESIL+   PK K K
Sbjct: 1119 IEKTVLGEVAKSIKIVMTQRQASIVISLDMARIEAAQLKISADSVKESILKHLNPKFKPK 1178

Query: 938  EQHVKVLDVRKLEVIP-QTDKNRLHFELHSLKNKLPTVVVKGINTVERAVINXXXXXXXX 762
               + V    KL VIP ++D+++LHFELH+LK  LP V+VKGI+TV+RAVIN        
Sbjct: 1179 ---IVVDKGYKLIVIPTESDRSKLHFELHNLKAVLPQVIVKGISTVQRAVINKSKDGKY- 1234

Query: 761  XXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKSH 582
                 NLLVEGT L  VMGT GVDGCKTTSNHI+EVQ TLG           IQYTM  H
Sbjct: 1235 -----NLLVEGTNLLGVMGTPGVDGCKTTSNHIIEVQGTLGIEAARRCIIDEIQYTMGKH 1289

Query: 581  GMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRDD 402
            GM ID+RHMMLLADLMT+KGEVLGITR GIQKMK+SVLMLASFEKTADHLFNASVNGRDD
Sbjct: 1290 GMDIDIRHMMLLADLMTYKGEVLGITRTGIQKMKESVLMLASFEKTADHLFNASVNGRDD 1349

Query: 401  KIEGVSECIIMGIPMQIGTGILKVRQRVPPV-QLSKGLEPLI 279
            KIEGVSECII+GIPMQIGTGILKV QR P V QLS   +P+I
Sbjct: 1350 KIEGVSECIILGIPMQIGTGILKVIQRYPQVPQLSYKPDPII 1391



 Score =  468 bits (1203), Expect(2) = 0.0
 Identities = 229/271 (84%), Positives = 244/271 (90%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDPETMCPNDGFVYFRNSELVSGQLG 2468
            LWTGKQLFSVL+RPHA MRVYLNLTV EK   K    ETMCPNDGFVYFRNSEL+ GQLG
Sbjct: 598  LWTGKQLFSVLVRPHAHMRVYLNLTVLEKNCVKQ--KETMCPNDGFVYFRNSELICGQLG 655

Query: 2467 KATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESLND 2288
            KATLGNGNKDGL+SVLLRDYN+HAAA+CMNR+AKLSARWIGN+GFSIGIDDVQPGE L D
Sbjct: 656  KATLGNGNKDGLFSVLLRDYNAHAAASCMNRIAKLSARWIGNHGFSIGIDDVQPGELLKD 715

Query: 2287 SKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMKEL 2108
             K+  I +GY  CDELI +YN+G L L+PGCDAAQTLEA+IT  LN IRE  A VCM+EL
Sbjct: 716  KKKETIEDGYKACDELIHSYNKGNLELEPGCDAAQTLEAQITRKLNEIREETAAVCMQEL 775

Query: 2107 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 1928
            HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK
Sbjct: 776  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 835

Query: 1927 GFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            GFVANSFY+GLTATEFFFHTMGGREGLVDTA
Sbjct: 836  GFVANSFYTGLTATEFFFHTMGGREGLVDTA 866


>ref|XP_009800353.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nicotiana
            sylvestris] gi|698510366|ref|XP_009800354.1| PREDICTED:
            DNA-directed RNA polymerase III subunit rpc1 [Nicotiana
            sylvestris]
          Length = 1390

 Score =  637 bits (1643), Expect(2) = 0.0
 Identities = 345/522 (66%), Positives = 396/522 (75%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            L+KALEDL+V+YDNTVRNAS  I+QF+YGDDGMDPSQME K G PLNF+RLF KVKATCP
Sbjct: 868  LMKALEDLAVYYDNTVRNASASIIQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCP 927

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCI-QRFESTRRALKM 1476
                  +  SEI   V +RLS HDM+ +GGCS AF+ S+ +FL K + +  +  R AL +
Sbjct: 928  PRGEKGLSYSEICEIVNERLSYHDMSPEGGCSEAFRASLSDFLIKNLAETLKRLREALLL 987

Query: 1475 DEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGE 1296
             E+Q   G  ++LEN+A  ISG+T +QL+VFL  CISRYHLKR               GE
Sbjct: 988  GEEQYAGGDREYLENVALNISGITKKQLQVFLNMCISRYHLKRLESGTAIGAIGAQSIGE 1047

Query: 1295 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKG 1116
            PGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AK+I+TPIITA L        A M+K 
Sbjct: 1048 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKINTPIITAKLLSAANLTAARMIKA 1107

Query: 1115 RIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKE 936
            RIEKT+LGQVAKS+KIV+ +RLASI +TLDME IQ SQL IDA+TVK+SIL+TPKIKLKE
Sbjct: 1108 RIEKTLLGQVAKSVKIVMASRLASIAITLDMETIQVSQLCIDAYTVKQSILQTPKIKLKE 1167

Query: 935  QHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN---XXXXXXX 765
            Q VKVL+ RKLEV PQ +K++LHFELH LKNKLP VVVKGI TV+RAV+N          
Sbjct: 1168 QQVKVLNPRKLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQERDRKSD 1227

Query: 764  XXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKS 585
                 Y LLVEGTGL AVMG +GVDG  T SNHIMEVQQ LG           I YTM S
Sbjct: 1228 VKGETYELLVEGTGLLAVMGIDGVDGRNTKSNHIMEVQQRLGIEAARISIIDEINYTMSS 1287

Query: 584  HGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRD 405
            HGMTIDLRHMMLLADLMT+KGEVLGITR G+QKMKDSVLMLASFEKT DHLF+ASVNGRD
Sbjct: 1288 HGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFSASVNGRD 1347

Query: 404  DKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSKGLEPLI 279
            DKIEGVSECIIMGIPMQIGTG+ K+RQ V  V+L+   EP++
Sbjct: 1348 DKIEGVSECIIMGIPMQIGTGMFKLRQCVQQVELNYQSEPML 1389



 Score =  451 bits (1160), Expect(2) = 0.0
 Identities = 217/271 (80%), Positives = 242/271 (89%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDPETMCPNDGFVYFRNSELVSGQLG 2468
            LWTGKQLF VLLRP++ MRVY+NLTVTEK+Y  SG  ETMCP+DGFVYFRNSEL+SGQLG
Sbjct: 587  LWTGKQLFGVLLRPYSKMRVYVNLTVTEKSY--SGKGETMCPSDGFVYFRNSELISGQLG 644

Query: 2467 KATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESLND 2288
            KATLGNGNKDGLYSVLLRDY SHAAATCMNRLAKLSARWIGN+GFSIGIDDV PGE+L  
Sbjct: 645  KATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVK 704

Query: 2287 SKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMKEL 2108
             K+  I + Y KC++ I+ +NEG+L++QPGCDAAQTLEAE+T  LN +R+    +CMK L
Sbjct: 705  QKQEEIYQNYKKCEDRIQQFNEGKLAVQPGCDAAQTLEAEVTMALNKVRDDIGKICMKAL 764

Query: 2107 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 1928
            HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAK
Sbjct: 765  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPTKSKFPAAK 824

Query: 1927 GFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            GFVA+SF+ GL+ATEFFFHTMGGREGLVDTA
Sbjct: 825  GFVAHSFFDGLSATEFFFHTMGGREGLVDTA 855


>ref|XP_009610317.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Nicotiana tomentosiformis]
            gi|697112870|ref|XP_009610318.1| PREDICTED: DNA-directed
            RNA polymerase III subunit rpc1 isoform X1 [Nicotiana
            tomentosiformis]
          Length = 1390

 Score =  640 bits (1650), Expect(2) = 0.0
 Identities = 348/522 (66%), Positives = 397/522 (76%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            L+KALEDL+V+YDNTVRNAS  I+QF+YGDDGMDPSQME K G PLNF+RLF KVKATCP
Sbjct: 868  LMKALEDLAVYYDNTVRNASTSIIQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCP 927

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCI-QRFESTRRALKM 1476
                 S+  SEI   V +RLS HDM+ +GGCS AF+ S+ +FL K + +  +  R AL +
Sbjct: 928  PRGEKSLSYSEICEIVNERLSYHDMSPEGGCSEAFRASLSDFLIKHLAETLKRLREALLL 987

Query: 1475 DEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGE 1296
            D +Q   G  ++LENIA  ISG+T +QL+VFL  CISRYHLKR               GE
Sbjct: 988  DGEQYAGGDREYLENIALNISGITKKQLQVFLNMCISRYHLKRLESGTAIGAIGAQSIGE 1047

Query: 1295 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKG 1116
            PGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AK+I+TPIITA L        A M+K 
Sbjct: 1048 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKINTPIITAKLLSAANLTAARMIKA 1107

Query: 1115 RIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKE 936
            RIEKT+LGQVAKS+KIV+ +RLASI +TLDME IQ SQL IDA+TVK+SIL+TPKIKLKE
Sbjct: 1108 RIEKTLLGQVAKSVKIVMASRLASIAITLDMETIQVSQLCIDAYTVKQSILQTPKIKLKE 1167

Query: 935  QHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN---XXXXXXX 765
            Q VKVL+ RKLEV PQ +K++LHFELH LKNKLP VVVKGI TV+RAV+N          
Sbjct: 1168 QQVKVLNHRKLEVFPQANKDKLHFELHRLKNKLPVVVVKGITTVQRAVVNKEQERDRKSD 1227

Query: 764  XXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKS 585
                 Y LLVEGTGL AVMG +GVDG  T SNHIMEVQQ LG           I YTM S
Sbjct: 1228 VKGETYELLVEGTGLLAVMGIDGVDGRNTKSNHIMEVQQRLGIEAARISIIDEINYTMSS 1287

Query: 584  HGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRD 405
            HGMTIDLRHMMLLADLMT+KGEVLGITR G+QKMKDSVLMLASFEKT DHLFNASVNGRD
Sbjct: 1288 HGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRD 1347

Query: 404  DKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSKGLEPLI 279
            DKIEGVSECIIMGIPMQIGTG+ K+RQ V  V+L+   EP++
Sbjct: 1348 DKIEGVSECIIMGIPMQIGTGMFKLRQCVQQVELNYQSEPML 1389



 Score =  447 bits (1150), Expect(2) = 0.0
 Identities = 217/271 (80%), Positives = 240/271 (88%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDPETMCPNDGFVYFRNSELVSGQLG 2468
            LWTGKQLF VLLRP++ MRVY+NLTVTEK+Y  SG  ETMCP+DGFVYFRNSEL+SGQLG
Sbjct: 587  LWTGKQLFGVLLRPYSKMRVYVNLTVTEKSY--SGKGETMCPSDGFVYFRNSELISGQLG 644

Query: 2467 KATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESLND 2288
            KATLGNGNKDGLYSVLLRDY SHAAATCMNRLAKLSARWIGN+GFSIGIDDV PGE L  
Sbjct: 645  KATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGEILVK 704

Query: 2287 SKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMKEL 2108
             K   I + Y KC++ I+ +NEG+L++QPGCDAAQTLEAE+T  LN +R+    +CMK L
Sbjct: 705  QKLEEIHQNYKKCEDRIQQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL 764

Query: 2107 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 1928
            HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAK
Sbjct: 765  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPTKSKFPAAK 824

Query: 1927 GFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            GFVA+SF+ GL+ATEFFFHTMGGREGLVDTA
Sbjct: 825  GFVAHSFFDGLSATEFFFHTMGGREGLVDTA 855


>ref|XP_009610319.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Nicotiana tomentosiformis]
            gi|697112874|ref|XP_009610320.1| PREDICTED: DNA-directed
            RNA polymerase III subunit rpc1 isoform X2 [Nicotiana
            tomentosiformis]
          Length = 1375

 Score =  632 bits (1630), Expect(2) = 0.0
 Identities = 343/507 (67%), Positives = 388/507 (76%), Gaps = 4/507 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            L+KALEDL+V+YDNTVRNAS  I+QF+YGDDGMDPSQME K G PLNF+RLF KVKATCP
Sbjct: 868  LMKALEDLAVYYDNTVRNASTSIIQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCP 927

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCI-QRFESTRRALKM 1476
                 S+  SEI   V +RLS HDM+ +GGCS AF+ S+ +FL K + +  +  R AL +
Sbjct: 928  PRGEKSLSYSEICEIVNERLSYHDMSPEGGCSEAFRASLSDFLIKHLAETLKRLREALLL 987

Query: 1475 DEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGE 1296
            D +Q   G  ++LENIA  ISG+T +QL+VFL  CISRYHLKR               GE
Sbjct: 988  DGEQYAGGDREYLENIALNISGITKKQLQVFLNMCISRYHLKRLESGTAIGAIGAQSIGE 1047

Query: 1295 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKG 1116
            PGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AK+I+TPIITA L        A M+K 
Sbjct: 1048 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKINTPIITAKLLSAANLTAARMIKA 1107

Query: 1115 RIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKE 936
            RIEKT+LGQVAKS+KIV+ +RLASI +TLDME IQ SQL IDA+TVK+SIL+TPKIKLKE
Sbjct: 1108 RIEKTLLGQVAKSVKIVMASRLASIAITLDMETIQVSQLCIDAYTVKQSILQTPKIKLKE 1167

Query: 935  QHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN---XXXXXXX 765
            Q VKVL+ RKLEV PQ +K++LHFELH LKNKLP VVVKGI TV+RAV+N          
Sbjct: 1168 QQVKVLNHRKLEVFPQANKDKLHFELHRLKNKLPVVVVKGITTVQRAVVNKEQERDRKSD 1227

Query: 764  XXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKS 585
                 Y LLVEGTGL AVMG +GVDG  T SNHIMEVQQ LG           I YTM S
Sbjct: 1228 VKGETYELLVEGTGLLAVMGIDGVDGRNTKSNHIMEVQQRLGIEAARISIIDEINYTMSS 1287

Query: 584  HGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRD 405
            HGMTIDLRHMMLLADLMT+KGEVLGITR G+QKMKDSVLMLASFEKT DHLFNASVNGRD
Sbjct: 1288 HGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRD 1347

Query: 404  DKIEGVSECIIMGIPMQIGTGILKVRQ 324
            DKIEGVSECIIMGIPMQIGTG+ K+RQ
Sbjct: 1348 DKIEGVSECIIMGIPMQIGTGMFKLRQ 1374



 Score =  447 bits (1150), Expect(2) = 0.0
 Identities = 217/271 (80%), Positives = 240/271 (88%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDPETMCPNDGFVYFRNSELVSGQLG 2468
            LWTGKQLF VLLRP++ MRVY+NLTVTEK+Y  SG  ETMCP+DGFVYFRNSEL+SGQLG
Sbjct: 587  LWTGKQLFGVLLRPYSKMRVYVNLTVTEKSY--SGKGETMCPSDGFVYFRNSELISGQLG 644

Query: 2467 KATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESLND 2288
            KATLGNGNKDGLYSVLLRDY SHAAATCMNRLAKLSARWIGN+GFSIGIDDV PGE L  
Sbjct: 645  KATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGEILVK 704

Query: 2287 SKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMKEL 2108
             K   I + Y KC++ I+ +NEG+L++QPGCDAAQTLEAE+T  LN +R+    +CMK L
Sbjct: 705  QKLEEIHQNYKKCEDRIQQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL 764

Query: 2107 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 1928
            HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAK
Sbjct: 765  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPTKSKFPAAK 824

Query: 1927 GFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            GFVA+SF+ GL+ATEFFFHTMGGREGLVDTA
Sbjct: 825  GFVAHSFFDGLSATEFFFHTMGGREGLVDTA 855


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  635 bits (1639), Expect(2) = 0.0
 Identities = 345/522 (66%), Positives = 395/522 (75%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            L+KALEDL+V+YD+TVRNAS CIVQF+YGDDGMDPSQME K G PLNF+RLF KVKATCP
Sbjct: 867  LMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCP 926

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCI-QRFESTRRALKM 1476
             G   S+  SEI   V +RLS HDMT +GGCS AF+ S+ +FL K + +  ++ R +L +
Sbjct: 927  PGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAFRSSLSDFLIKNLAETLKNLRESLLL 986

Query: 1475 DEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGE 1296
             E+Q       +LE IA  ISG+T +QL+VFL TCISRYHLKR               GE
Sbjct: 987  GEEQYEGDDRGYLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGE 1046

Query: 1295 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKG 1116
            PGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AK+I+TPIIT  L        A M+K 
Sbjct: 1047 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKA 1106

Query: 1115 RIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKE 936
            RIEKT+LGQVAKS+KIVL +RLASI ++LDME IQ SQL IDA+TVK+SIL+T KIKLKE
Sbjct: 1107 RIEKTLLGQVAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKE 1166

Query: 935  QHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN---XXXXXXX 765
              +KVL+ RKLEV PQ +K++LHFELH LKNKLP VVVKGI TV+RAV+N          
Sbjct: 1167 HQIKVLNPRKLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKND 1226

Query: 764  XXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKS 585
                 Y LLVEGTGL AVMG EGVDG  T SNHIMEVQ TLG           I YTM S
Sbjct: 1227 VKGETYELLVEGTGLLAVMGIEGVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSS 1286

Query: 584  HGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRD 405
            HGMTIDLRHMMLLADLMT+KGEVLGITR G+QKMKDSVLMLASFEKT DHLFNASVNGRD
Sbjct: 1287 HGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRD 1346

Query: 404  DKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSKGLEPLI 279
            DKIEGV+ECIIMGIPM IGTG+ K+RQRV  V+L+   +P+I
Sbjct: 1347 DKIEGVTECIIMGIPMTIGTGMFKLRQRVEQVELNYQPDPII 1388



 Score =  443 bits (1139), Expect(2) = 0.0
 Identities = 215/271 (79%), Positives = 239/271 (88%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDPETMCPNDGFVYFRNSELVSGQLG 2468
            LWTGKQLF +LLRP++ MRVY+NLTVTEK+Y  SG  ETMCP+DGFVYFRNSEL+SGQLG
Sbjct: 586  LWTGKQLFHMLLRPYSKMRVYVNLTVTEKSY--SGKGETMCPSDGFVYFRNSELISGQLG 643

Query: 2467 KATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESLND 2288
            KATLGNGNKDGLYSVLLRDY SHAAATCMNRLAKLSARWIGN+GFSIGIDDV PGE+L  
Sbjct: 644  KATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVK 703

Query: 2287 SKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMKEL 2108
             K+  I   Y KC++ I  +NEG+L++QPGCDAAQTLEAE+T  LN +R+    +CMK L
Sbjct: 704  QKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL 763

Query: 2107 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 1928
             WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAK
Sbjct: 764  DWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAK 823

Query: 1927 GFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            GFVA+SF+ GL+ATEFFFHTMGGREGLVDTA
Sbjct: 824  GFVAHSFFDGLSATEFFFHTMGGREGLVDTA 854


>ref|XP_010033188.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1 [Eucalyptus grandis]
          Length = 1402

 Score =  609 bits (1571), Expect(2) = 0.0
 Identities = 325/527 (61%), Positives = 394/527 (74%), Gaps = 9/527 (1%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS+HYDNTVRNASGCIVQF+YGDDGMDP+ MEGK+G PLNF+RLF KVKATCP
Sbjct: 876  LIKALEDLSIHYDNTVRNASGCIVQFLYGDDGMDPALMEGKNGFPLNFDRLFMKVKATCP 935

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGG---CSMAFKDSIENFLEKCIQRFESTRRAL 1482
            + +H  + P EI   + ++L E + T DGG    S AFK S++ FL +  +  + +   +
Sbjct: 936  SREHKYLSPVEISALIEQKLPESESTPDGGLSDASKAFKKSVKAFLLE--EHEKGSEIIM 993

Query: 1481 KMDEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXX 1302
            K  ED +V  +   +  +A+ I G+T  QL+ F++TC+SRYHLKR               
Sbjct: 994  KFGEDATVENQETVIR-VAQKIGGITEGQLRAFIDTCMSRYHLKRIEAGSAIGAIGAQSI 1052

Query: 1301 GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMV 1122
            GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK+I TPIITA L+ DD    A MV
Sbjct: 1053 GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKILTPIITAELDRDDNVNIARMV 1112

Query: 1121 KGRIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKL 942
            K RI+KT+LGQ+AKSIK V+T+RL SIV+TLDM RI+ SQL IDA+TV+ESI++TPKIK 
Sbjct: 1113 KARIDKTVLGQIAKSIKTVMTSRLGSIVITLDMNRIEDSQLCIDANTVRESIMQTPKIKP 1172

Query: 941  KEQHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN------XX 780
            K+  + VLDV KLEV+P  D+ +LHFELHSLKN LP V+VKGI TVERAV+N        
Sbjct: 1173 KQLQINVLDVTKLEVVPLVDRGKLHFELHSLKNMLPNVIVKGIKTVERAVVNKGKEKYKD 1232

Query: 779  XXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQ 600
                      Y+L+VEGTGL+ VMGTEGVDG KT SNHI+E+QQTLG           IQ
Sbjct: 1233 KEGKVKEREKYSLVVEGTGLQEVMGTEGVDGRKTKSNHIIEIQQTLGIEAARWCIIEEIQ 1292

Query: 599  YTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNAS 420
            + M +HGM+ID+RHMMLLADLMTF+GEVLGITRFGIQKM  SVLMLASFEKT+DHLF+AS
Sbjct: 1293 FIMSNHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTSDHLFHAS 1352

Query: 419  VNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSKGLEPLI 279
             +G+ DKIEGVSECIIMG+PMQ+GTGILKV QR    +L+   +P+I
Sbjct: 1353 ASGKADKIEGVSECIIMGVPMQLGTGILKVIQRDEKPELTYASDPII 1399



 Score =  468 bits (1204), Expect(2) = 0.0
 Identities = 227/276 (82%), Positives = 246/276 (89%), Gaps = 5/276 (1%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDP-----ETMCPNDGFVYFRNSELV 2483
            LWTGKQ+FSVLLRP+A MRV++NLT+ EK Y+K  +      ETMCPNDGFVYFRNSEL+
Sbjct: 588  LWTGKQIFSVLLRPNARMRVFVNLTLKEKNYSKPKNASERELETMCPNDGFVYFRNSELI 647

Query: 2482 SGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPG 2303
            SGQLGKATLGNGNKDGLYS+LLRDYN+HAAA+CMNRLAKLSARWIGN+GFSIGIDDVQP 
Sbjct: 648  SGQLGKATLGNGNKDGLYSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPD 707

Query: 2302 ESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANV 2123
              LN+ KR  IL GY  CDE I+ YN+G+L LQPGCDAAQTLEA ITG+LN IR     V
Sbjct: 708  NDLNERKRETILNGYNSCDEKIELYNKGKLDLQPGCDAAQTLEAVITGILNQIRNETGQV 767

Query: 2122 CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSK 1943
            CMK+LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPR+SK
Sbjct: 768  CMKKLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRQSK 827

Query: 1942 TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 828  TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 863


>gb|KCW52757.1| hypothetical protein EUGRSUZ_J02108 [Eucalyptus grandis]
          Length = 1184

 Score =  609 bits (1571), Expect(2) = 0.0
 Identities = 325/527 (61%), Positives = 394/527 (74%), Gaps = 9/527 (1%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS+HYDNTVRNASGCIVQF+YGDDGMDP+ MEGK+G PLNF+RLF KVKATCP
Sbjct: 658  LIKALEDLSIHYDNTVRNASGCIVQFLYGDDGMDPALMEGKNGFPLNFDRLFMKVKATCP 717

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGG---CSMAFKDSIENFLEKCIQRFESTRRAL 1482
            + +H  + P EI   + ++L E + T DGG    S AFK S++ FL +  +  + +   +
Sbjct: 718  SREHKYLSPVEISALIEQKLPESESTPDGGLSDASKAFKKSVKAFLLE--EHEKGSEIIM 775

Query: 1481 KMDEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXX 1302
            K  ED +V  +   +  +A+ I G+T  QL+ F++TC+SRYHLKR               
Sbjct: 776  KFGEDATVENQETVIR-VAQKIGGITEGQLRAFIDTCMSRYHLKRIEAGSAIGAIGAQSI 834

Query: 1301 GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMV 1122
            GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK+I TPIITA L+ DD    A MV
Sbjct: 835  GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKILTPIITAELDRDDNVNIARMV 894

Query: 1121 KGRIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKL 942
            K RI+KT+LGQ+AKSIK V+T+RL SIV+TLDM RI+ SQL IDA+TV+ESI++TPKIK 
Sbjct: 895  KARIDKTVLGQIAKSIKTVMTSRLGSIVITLDMNRIEDSQLCIDANTVRESIMQTPKIKP 954

Query: 941  KEQHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN------XX 780
            K+  + VLDV KLEV+P  D+ +LHFELHSLKN LP V+VKGI TVERAV+N        
Sbjct: 955  KQLQINVLDVTKLEVVPLVDRGKLHFELHSLKNMLPNVIVKGIKTVERAVVNKGKEKYKD 1014

Query: 779  XXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQ 600
                      Y+L+VEGTGL+ VMGTEGVDG KT SNHI+E+QQTLG           IQ
Sbjct: 1015 KEGKVKEREKYSLVVEGTGLQEVMGTEGVDGRKTKSNHIIEIQQTLGIEAARWCIIEEIQ 1074

Query: 599  YTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNAS 420
            + M +HGM+ID+RHMMLLADLMTF+GEVLGITRFGIQKM  SVLMLASFEKT+DHLF+AS
Sbjct: 1075 FIMSNHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTSDHLFHAS 1134

Query: 419  VNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSKGLEPLI 279
             +G+ DKIEGVSECIIMG+PMQ+GTGILKV QR    +L+   +P+I
Sbjct: 1135 ASGKADKIEGVSECIIMGVPMQLGTGILKVIQRDEKPELTYASDPII 1181



 Score =  468 bits (1204), Expect(2) = 0.0
 Identities = 227/276 (82%), Positives = 246/276 (89%), Gaps = 5/276 (1%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDP-----ETMCPNDGFVYFRNSELV 2483
            LWTGKQ+FSVLLRP+A MRV++NLT+ EK Y+K  +      ETMCPNDGFVYFRNSEL+
Sbjct: 370  LWTGKQIFSVLLRPNARMRVFVNLTLKEKNYSKPKNASERELETMCPNDGFVYFRNSELI 429

Query: 2482 SGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPG 2303
            SGQLGKATLGNGNKDGLYS+LLRDYN+HAAA+CMNRLAKLSARWIGN+GFSIGIDDVQP 
Sbjct: 430  SGQLGKATLGNGNKDGLYSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPD 489

Query: 2302 ESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANV 2123
              LN+ KR  IL GY  CDE I+ YN+G+L LQPGCDAAQTLEA ITG+LN IR     V
Sbjct: 490  NDLNERKRETILNGYNSCDEKIELYNKGKLDLQPGCDAAQTLEAVITGILNQIRNETGQV 549

Query: 2122 CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSK 1943
            CMK+LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPR+SK
Sbjct: 550  CMKKLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRQSK 609

Query: 1942 TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 610  TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 645


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Solanum
            lycopersicum]
          Length = 1390

 Score =  633 bits (1632), Expect(2) = 0.0
 Identities = 343/522 (65%), Positives = 395/522 (75%), Gaps = 4/522 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            L+KALEDL+V+YD+TVRNAS CIVQF+YGDDGMDPS+ME K G PLNF+RLF KVKATCP
Sbjct: 867  LMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSRMEEKKGRPLNFSRLFMKVKATCP 926

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCI-QRFESTRRALKM 1476
             G   S+  SEI   V +RLS HDMT +GGCS AF+ S+ +FL K + +  ++ R +L +
Sbjct: 927  PGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAFRASLSDFLIKSLAETLKNLRESLLL 986

Query: 1475 DEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGE 1296
             E+Q       +LE I   ISG+T +QL+VFL TCISRYHLKR               GE
Sbjct: 987  GEEQYEGDDRGYLEKIVLNISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGE 1046

Query: 1295 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKG 1116
            PGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AK+I+TPIITA L        A M+K 
Sbjct: 1047 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKA 1106

Query: 1115 RIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKE 936
            RIEKT+LGQVAKS+KIVL +RLASI ++LDME IQ SQL IDA+TVK+SIL+T KIKLKE
Sbjct: 1107 RIEKTLLGQVAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKE 1166

Query: 935  QHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN---XXXXXXX 765
              +KVL+ RKLEV PQ +K++LHFELH LKNKLP VVVKGI TV+RAV+N          
Sbjct: 1167 HQIKVLNPRKLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKND 1226

Query: 764  XXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKS 585
                 Y LLVEGTGL AVMG EGVDG  T SNHIMEVQ TLG           I YTM S
Sbjct: 1227 VKGETYELLVEGTGLLAVMGIEGVDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSS 1286

Query: 584  HGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRD 405
            HGMTIDLRHMMLLADLMT+KGEVLGITR G+QKMKDSVLMLASFEKT DHLFNASVNGRD
Sbjct: 1287 HGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRD 1346

Query: 404  DKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSKGLEPLI 279
            DKIEGV+ECIIMGIPM IGTG+ K+RQRV  V+L+   +P++
Sbjct: 1347 DKIEGVTECIIMGIPMTIGTGMFKLRQRVEHVELNYQPDPMM 1388



 Score =  440 bits (1131), Expect(2) = 0.0
 Identities = 214/271 (78%), Positives = 238/271 (87%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKSGDPETMCPNDGFVYFRNSELVSGQLG 2468
            LWTGKQLF VLLRP++ MRVY+NLT+TEK+Y  SG  ETMC +DGFVYFRNSEL+SGQLG
Sbjct: 586  LWTGKQLFHVLLRPYSKMRVYVNLTLTEKSY--SGKGETMCSSDGFVYFRNSELISGQLG 643

Query: 2467 KATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESLND 2288
            KATLGNGNKDGLYSVLLRDY SHAAATCMNRLAKLSARWIGN+GFSIGIDDV PGE+L  
Sbjct: 644  KATLGNGNKDGLYSVLLRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVK 703

Query: 2287 SKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMKEL 2108
             K+  I   Y KC++ I  +NEG+L++QPGCDAAQTLEAE+T  LN +R+    +CMK L
Sbjct: 704  QKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKAL 763

Query: 2107 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAK 1928
             WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAK
Sbjct: 764  DWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAK 823

Query: 1927 GFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            GFVA+SF+ GL+ATEFFFHTMGGREGLVDTA
Sbjct: 824  GFVAHSFFDGLSATEFFFHTMGGREGLVDTA 854


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  614 bits (1584), Expect(2) = 0.0
 Identities = 331/530 (62%), Positives = 394/530 (74%), Gaps = 12/530 (2%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIK LEDLS+ YDNTVRNASGCIVQF+YGDDG+DP+ MEGK GVPLN +RLFSKVKATCP
Sbjct: 853  LIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLNLDRLFSKVKATCP 912

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
              +   + P +I + V   L +HDM   G CS AFK S+ +FL    +R ES  +     
Sbjct: 913  VREEDYLSPLDISDVVENLLLKHDMALGGICSEAFKKSLTSFLGSHAKRLESMMKLADGV 972

Query: 1472 EDQS--------VNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXX 1317
            ED +        + G +K +E +A  I GV+ +Q++VF++TCI+RY  KR          
Sbjct: 973  EDPTSENIQTGGIRGNSKIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAI 1032

Query: 1316 XXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPK 1137
                 GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK+ISTPIITA LE +    
Sbjct: 1033 GAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTNVT 1092

Query: 1136 TATMVKGRIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRT 957
             A + KGRI+KT+LGQVAKSIKIV+T+R AS+V+TLDM+ IQ +QLS+DA+ VKE+ILRT
Sbjct: 1093 AARIAKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAILRT 1152

Query: 956  PKIKLKEQHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVI---N 786
            P+IKLK QH+KVLD RKLEVIP  D+ R+HFELH+LKN LP+++V+GI TVERAVI    
Sbjct: 1153 PRIKLKPQHIKVLDTRKLEVIPLGDRERVHFELHNLKNLLPSIIVQGIKTVERAVIAQKK 1212

Query: 785  XXXXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXX 606
                        YN+LVEG GL  VMGTEGVDGCKTTSNH+MEVQ+ LG           
Sbjct: 1213 HDGKANDQELPTYNMLVEGMGLDLVMGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDE 1272

Query: 605  IQYTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFN 426
            I  TM+ HGM+ID+RHMMLL DLMTFKGEVLGITRFGIQKM  SVLMLASFEKTADHL++
Sbjct: 1273 INQTMEHHGMSIDIRHMMLLGDLMTFKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYH 1332

Query: 425  ASVNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRV-PPVQLSKGLEPLI 279
            A+V GRDDKIEGVSECIIMGIPMQIGTGILKV+QRV PP  L+ G + +I
Sbjct: 1333 AAVFGRDDKIEGVSECIIMGIPMQIGTGILKVQQRVDPPPVLNYGSDSII 1382



 Score =  449 bits (1155), Expect(2) = 0.0
 Identities = 224/278 (80%), Positives = 243/278 (87%), Gaps = 7/278 (2%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNK--SGDP---ETMCPNDGFVYFRNSELV 2483
            LWTGKQLFSVLLRP+A++RVY+NL V EK Y+K   GD    ETMCPNDGFVY RNSEL+
Sbjct: 563  LWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKGDKREKETMCPNDGFVYIRNSELI 622

Query: 2482 SGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLS--ARWIGNNGFSIGIDDVQ 2309
            SGQLGKATLGNGNKDGLYS+LLRDYN HAAATCMNRLAKL   ARWIGN+GFSIGIDDVQ
Sbjct: 623  SGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGIDDVQ 682

Query: 2308 PGESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAA 2129
            PG+ L D K   I  GY +CD+LI+ YNEG+L L+PGCDA QTLE+EIT  LN +RE A 
Sbjct: 683  PGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLREEAG 742

Query: 2128 NVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRK 1949
            +VCMKELHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDRSLPHFPRK
Sbjct: 743  DVCMKELHWRNSPLIMSQCGSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRK 802

Query: 1948 SKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            SKTPAAKGFVANSFYSGL ATEFFFHTM GREGLVDTA
Sbjct: 803  SKTPAAKGFVANSFYSGLMATEFFFHTMAGREGLVDTA 840


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  615 bits (1586), Expect(2) = 0.0
 Identities = 329/525 (62%), Positives = 387/525 (73%), Gaps = 7/525 (1%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS+ YDN+VRNA GCIVQF+YGDDGMDP+ MEGK G PLNF+RL  KVKATCP
Sbjct: 885  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCP 944

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
                  + P ++   V K+L+ +   S   CS AF +S+  F E    + +   + +K  
Sbjct: 945  PAGQRYLSPQQVSEIVEKQLAAYGKES---CSEAFLNSLRKFFEGQQDKLD---KKIKFV 998

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
            ED   + K++ LE +    SG+T +QL+VF++TC SRYH+KR               GEP
Sbjct: 999  EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEP 1058

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMN+T GVPRIKEIINGAKRISTPIITA LEC+D    A +VKGR
Sbjct: 1059 GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGR 1118

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKEQ 933
            IEKT+LGQVAKSIKIV+T+RLASIV+ LDME IQ + L I+A  VKESI++TPKIKLK+Q
Sbjct: 1119 IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQ 1178

Query: 932  HVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVI-----NXXXXXX 768
            H+KVLD RKLE+ P  DK+++HFEL+SLKN LP V+VKGI TVER VI            
Sbjct: 1179 HIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKE 1238

Query: 767  XXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMK 588
                  Y LLVEGTGL+AVMG EG+DGCKT SNHI EVQQTLG           I  TMK
Sbjct: 1239 NGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1298

Query: 587  SHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGR 408
            +HGM+ID RHMMLLADLMTF+GEVLGITRFGIQKM  SVLMLASFEKTADHLFNASVNGR
Sbjct: 1299 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1358

Query: 407  DDKIEGVSECIIMGIPMQIGTGILKVRQR--VPPVQLSKGLEPLI 279
            DD+IEGVSECIIMGIPM +GTGILK+RQR  VPP+      +P++
Sbjct: 1359 DDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1403



 Score =  447 bits (1151), Expect(2) = 0.0
 Identities = 222/280 (79%), Positives = 239/280 (85%), Gaps = 9/280 (3%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS-----GDPE----TMCPNDGFVYFRN 2495
            LWTGKQLFSVL+RPHA+MRVY+NLTV EKTY+       GD E    TMCPNDGFVYFRN
Sbjct: 593  LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRN 652

Query: 2494 SELVSGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDD 2315
            SEL+SGQLGKATLGNGNKDGLYSVLLRDY +HA + CMNRLAKLSARWIGN+GFSIGIDD
Sbjct: 653  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 712

Query: 2314 VQPGESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRET 2135
            VQP + L+D K   I E Y  C+  IK YNEG+L L+PGCDAAQTLEA IT +LN IRE 
Sbjct: 713  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 772

Query: 2134 AANVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 1955
            A   CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFP
Sbjct: 773  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 832

Query: 1954 RKSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            RK+K PAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDTA
Sbjct: 833  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 872


>gb|KDO73040.1| hypothetical protein CISIN_1g000828mg [Citrus sinensis]
            gi|641854233|gb|KDO73041.1| hypothetical protein
            CISIN_1g000828mg [Citrus sinensis]
          Length = 1265

 Score =  612 bits (1578), Expect(2) = 0.0
 Identities = 328/525 (62%), Positives = 386/525 (73%), Gaps = 7/525 (1%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS+ YDN+VRNA GCIVQF+YGDDGMDP+ MEGK G PLNF+RL  KVKATCP
Sbjct: 746  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCP 805

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
                  + P ++   V K+L+ +   S   CS AF +S+  F E    + +   + +K  
Sbjct: 806  PAGQRYLSPQQVSEIVEKQLAAYGKES---CSEAFLNSLRKFFEGQQDKLD---KKIKFV 859

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
            ED   + K++ LE +    SG+T +QL+VF++TC SRY +KR               GEP
Sbjct: 860  EDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYRVKRVEAGTAIGAIGAQSIGEP 919

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMN+T GVPRIKEIINGAKRISTPIITA LEC+D    A +VKGR
Sbjct: 920  GTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGR 979

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKEQ 933
            IEKT+LGQVAKSIKIV+T+RLASIV+ LDME IQ + L I+A  VKESI++TPKIKLK+Q
Sbjct: 980  IEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQ 1039

Query: 932  HVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVI-----NXXXXXX 768
            H+KVLD RKLE+ P  DK+++HFEL+SLKN LP V+VKGI TVER VI            
Sbjct: 1040 HIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKE 1099

Query: 767  XXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMK 588
                  Y LLVEGTGL+AVMG EG+DGCKT SNHI EVQQTLG           I  TMK
Sbjct: 1100 NGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMK 1159

Query: 587  SHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGR 408
            +HGM+ID RHMMLLADLMTF+GEVLGITRFGIQKM  SVLMLASFEKTADHLFNASVNGR
Sbjct: 1160 AHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR 1219

Query: 407  DDKIEGVSECIIMGIPMQIGTGILKVRQR--VPPVQLSKGLEPLI 279
            DD+IEGVSECIIMGIPM +GTGILK+RQR  VPP+      +P++
Sbjct: 1220 DDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1264



 Score =  447 bits (1151), Expect(2) = 0.0
 Identities = 222/280 (79%), Positives = 239/280 (85%), Gaps = 9/280 (3%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS-----GDPE----TMCPNDGFVYFRN 2495
            LWTGKQLFSVL+RPHA+MRVY+NLTV EKTY+       GD E    TMCPNDGFVYFRN
Sbjct: 454  LWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRN 513

Query: 2494 SELVSGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDD 2315
            SEL+SGQLGKATLGNGNKDGLYSVLLRDY +HA + CMNRLAKLSARWIGN+GFSIGIDD
Sbjct: 514  SELISGQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDD 573

Query: 2314 VQPGESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRET 2135
            VQP + L+D K   I E Y  C+  IK YNEG+L L+PGCDAAQTLEA IT +LN IRE 
Sbjct: 574  VQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIRED 633

Query: 2134 AANVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 1955
            A   CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFP
Sbjct: 634  AGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFP 693

Query: 1954 RKSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            RK+K PAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDTA
Sbjct: 694  RKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTA 733


>ref|XP_008222562.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Prunus mume]
          Length = 1425

 Score =  603 bits (1556), Expect(2) = 0.0
 Identities = 324/519 (62%), Positives = 382/519 (73%), Gaps = 14/519 (2%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            L K LEDLSV YDNTVRNASGCIVQF YGDDGMDP+ MEG+ G PL+F RLF K KATCP
Sbjct: 880  LSKILEDLSVQYDNTVRNASGCIVQFCYGDDGMDPAMMEGEGGAPLDFRRLFLKAKATCP 939

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
            AG++ S+   E+   V  RLS+ DMT D GCS  FK S+E FL+K  +    T     +D
Sbjct: 940  AGENESLSLEEVSEIVKDRLSKQDMTPDRGCSAGFKSSLEEFLDKYAKELRKTHDTFVLD 999

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
            +  +   K+  LE I + ISGVT +QL+VFL TCISRYH K+               GEP
Sbjct: 1000 QSPAWKEKSASLEKIVQNISGVTCKQLEVFLNTCISRYHSKKVEAGTAIGVIGAQSIGEP 1059

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK+ISTPI+TA LE ++  K A +V GR
Sbjct: 1060 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIVTAILEHNNNAKFARVVAGR 1119

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKEQ 933
            IEKTMLGQV+KSIKIV+T+R ASIV+TLDM  IQ + LSIDA+ VKESILRTP+IKLK++
Sbjct: 1120 IEKTMLGQVSKSIKIVMTSRSASIVITLDMVMIQDAHLSIDANVVKESILRTPRIKLKQE 1179

Query: 932  HVKVLDVRKLEVIPQ-TDKNRLHFELHSLKNKLPTVVVKGINTVERAVIN---------- 786
            HVKVLD+RKLE++PQ  D++RLHF L+ LK+ LP V+V+GI+TV+R VI+          
Sbjct: 1180 HVKVLDIRKLEILPQEADRSRLHFNLYYLKSVLPKVIVRGISTVQRVVIDAKEVKKNKKD 1239

Query: 785  ---XXXXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXX 615
                           Y L  EGTGL +VMGTEGVDGCKTTSN +MEVQ+TLG        
Sbjct: 1240 LEVTCADGDKREEKEYKLFAEGTGLLSVMGTEGVDGCKTTSNDVMEVQRTLGIEAARVCI 1299

Query: 614  XXXIQYTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADH 435
               I++TMKSHGM ID RHM+ LAD+MT++GEVLGITRFG+QKM  SVLM+ASFE+T D 
Sbjct: 1300 IEEIKHTMKSHGMNIDDRHMIFLADVMTYRGEVLGITRFGVQKMDKSVLMMASFERTDDI 1359

Query: 434  LFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRV 318
            LFNA VNGR DK+EGVSE IIMGIPMQIGTGI KVRQRV
Sbjct: 1360 LFNACVNGRVDKVEGVSESIIMGIPMQIGTGIFKVRQRV 1398



 Score =  451 bits (1159), Expect(2) = 0.0
 Identities = 217/273 (79%), Positives = 243/273 (89%), Gaps = 2/273 (0%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS--GDPETMCPNDGFVYFRNSELVSGQ 2474
            LWTGKQLFSVL+RP++++RVYLN TV EK+Y+K+  G PE MCPNDGFVYFRNSEL++GQ
Sbjct: 595  LWTGKQLFSVLVRPNSNVRVYLNFTVNEKSYSKTEDGGPEAMCPNDGFVYFRNSELIAGQ 654

Query: 2473 LGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGESL 2294
            LGK TLGNGNKDGLYSVLLRDY +HAAA+CMNRLAKLSARWIGN+GFSIGI DVQP ++L
Sbjct: 655  LGKGTLGNGNKDGLYSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPSDNL 714

Query: 2293 NDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVCMK 2114
             + K   I EGY KC   IK YNEG+L L+PGCDAAQ+LE+ IT +LN IR+    +CM+
Sbjct: 715  YNEKEKIIKEGYNKCAGKIKLYNEGQLPLEPGCDAAQSLESGITKILNNIRDQTGKLCMQ 774

Query: 2113 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPA 1934
             LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRK+KTPA
Sbjct: 775  TLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPA 834

Query: 1933 AKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            AKGFVA+SFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 835  AKGFVASSFYSGLTATEFFFHTMGGREGLVDTA 867


>ref|XP_012064930.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha
            curcas]
          Length = 1413

 Score =  588 bits (1517), Expect(2) = 0.0
 Identities = 317/531 (59%), Positives = 390/531 (73%), Gaps = 13/531 (2%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIK LEDL + YDN V +A+G +VQF+YGDDG+DP++MEGK GVPLN +RLF KVKATCP
Sbjct: 882  LIKGLEDLFIDYDNKVLSANGSVVQFVYGDDGLDPAKMEGKGGVPLNLDRLFMKVKATCP 941

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFEST------- 1494
            AG+   + PS+I + V   L ++D   D  CS AFK ++  FL   ++R E+        
Sbjct: 942  AGEGDYLSPSDISSWVKTLLDDYDKAFDSVCSEAFKQNLSFFLGNHVKRLETMLKLDNGV 1001

Query: 1493 --RRALKMDEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXX 1320
              + +  M+E   V G T  +E +A  I G+T +QL+VFL+TCI RY  KR         
Sbjct: 1002 EEQNSENMEEVGGVRGNTTNIEKLAHKIYGITKRQLEVFLKTCIVRYLWKRIEPGTAIGA 1061

Query: 1319 XXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKP 1140
                  GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK+ISTPIIT  LE +   
Sbjct: 1062 IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKKISTPIITTELENNTNV 1121

Query: 1139 KTATMVKGRIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILR 960
              A +VK RIEKT+LGQ+AKSIKIV+T+R AS+VVTLDM+ IQ +QLS+DA+TV+ESIL+
Sbjct: 1122 NAARIVKTRIEKTVLGQIAKSIKIVMTSRSASVVVTLDMKTIQEAQLSLDANTVRESILQ 1181

Query: 959  TPKIKLKEQHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVI--- 789
            TP+ KLK Q++KVLD+RKLEVIP  D+ ++HFELHSLKN LP++ VKGI TVERAVI   
Sbjct: 1182 TPRTKLKPQNIKVLDIRKLEVIPLGDREKVHFELHSLKNMLPSITVKGIKTVERAVIAQK 1241

Query: 788  NXXXXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXX 609
                         YN+ VEG GL+ VMGTEGVDG KTTSNH+ME+ + LG          
Sbjct: 1242 KREGKASIQELPTYNMFVEGMGLQEVMGTEGVDGRKTTSNHVMEIFKYLGIEAARKCIID 1301

Query: 608  XIQYTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLF 429
             I+  M+ HGM+ID RHMMLLADLMTFKGEVLGITRFGIQKM  SVLMLASFEKT+DHL+
Sbjct: 1302 EIKNVMEGHGMSIDTRHMMLLADLMTFKGEVLGITRFGIQKMDKSVLMLASFEKTSDHLY 1361

Query: 428  NASVNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRVPP-VQLSKGLEPLI 279
             A+V+GRDD+IEGVSECIIMGIPM++GTGILKV+QRV P   L+KGL+P++
Sbjct: 1362 TAAVHGRDDRIEGVSECIIMGIPMRLGTGILKVQQRVDPRPMLTKGLDPIM 1412



 Score =  466 bits (1198), Expect(2) = 0.0
 Identities = 229/276 (82%), Positives = 247/276 (89%), Gaps = 5/276 (1%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS--GDP---ETMCPNDGFVYFRNSELV 2483
            LWTGKQLFSVLLRP+A++RVYLNLTV EK Y+K   GD    ETMCPNDGFVY RNSEL+
Sbjct: 594  LWTGKQLFSVLLRPNANVRVYLNLTVKEKIYSKPKPGDKREKETMCPNDGFVYIRNSELI 653

Query: 2482 SGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPG 2303
            SGQLGKAT+GNGNKDGLYS+LLRDYN HAAA CMNRLAKLSARWIGN+GFSIGIDDVQPG
Sbjct: 654  SGQLGKATIGNGNKDGLYSILLRDYNPHAAAICMNRLAKLSARWIGNHGFSIGIDDVQPG 713

Query: 2302 ESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANV 2123
            + L D K   I  GY  CD+LI+ YNEG+L+L+PGCDA QTLEAEIT  LN +RE A +V
Sbjct: 714  KKLIDEKAKTISNGYQHCDKLIQEYNEGKLALKPGCDAIQTLEAEITETLNKLREQAGDV 773

Query: 2122 CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSK 1943
            CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GF+DRSLPHFPRKSK
Sbjct: 774  CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFPRKSK 833

Query: 1942 TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 834  TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 869


>ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Gossypium raimondii] gi|763752836|gb|KJB20224.1|
            hypothetical protein B456_003G139100 [Gossypium
            raimondii]
          Length = 1398

 Score =  600 bits (1546), Expect(2) = 0.0
 Identities = 325/523 (62%), Positives = 385/523 (73%), Gaps = 5/523 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS+HYDNT RNASGCIVQFIYGDDGMDP+ MEGK G PLNF+RL  KVKATCP
Sbjct: 882  LIKALEDLSIHYDNTCRNASGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCP 941

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
                  +    I   + +++ +HD   DG CS AFK S++ FLE    +    +R +++ 
Sbjct: 942  PVDQKYLPADAIPQMLEEQVVKHD--PDGVCSEAFKKSLKGFLEG---QKNELKRVMQLV 996

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
             + +   K++ LE+++  I G+T +QL+VF+  CI RY  K                GEP
Sbjct: 997  SNSAQ--KSEILEDVSHKICGITDRQLEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEP 1054

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMN+T GVPRIKEIIN AK+ISTPIITA LE D     A MVKGR
Sbjct: 1055 GTQMTLKTFHFAGVASMNITQGVPRIKEIINAAKKISTPIITAELEFDSNVNVARMVKGR 1114

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKEQ 933
            IEKT+LGQVAKSIKIV+T+RLAS+V++LDMERIQ +QL IDA+ VKESIL+TPK+KLKEQ
Sbjct: 1115 IEKTVLGQVAKSIKIVMTSRLASVVISLDMERIQDAQLHIDANVVKESILQTPKLKLKEQ 1174

Query: 932  HVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVI----NXXXXXXX 765
            HVKVLDV+KLEV+P  D++R+HFELHSLKN LP VVVKGI TVER VI            
Sbjct: 1175 HVKVLDVKKLEVVPPADRSRIHFELHSLKNLLPLVVVKGIKTVERVVIAEKKKDNKSQNK 1234

Query: 764  XXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKS 585
                 Y L VEG GL+ VMG EG+DG KT SNH+ME+ Q LG           I  TM S
Sbjct: 1235 EAKKLYQLFVEGMGLQTVMGVEGIDGRKTMSNHVMEMLQILGIEAARSCIINEIAATMAS 1294

Query: 584  HGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRD 405
            HGM+ID+RHMMLL D+MTF+GEVLGITRFGIQKM  S+LMLASFEKT DHLFNASVNGRD
Sbjct: 1295 HGMSIDIRHMMLLGDVMTFRGEVLGITRFGIQKMDKSILMLASFEKTGDHLFNASVNGRD 1354

Query: 404  DKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSK-GLEPLI 279
            DKIEGV+ECIIMGIPMQ+GTGILKV QRV P+ L + G +P++
Sbjct: 1355 DKIEGVTECIIMGIPMQLGTGILKVMQRVDPLPLLQYGADPVL 1397



 Score =  454 bits (1169), Expect(2) = 0.0
 Identities = 224/280 (80%), Positives = 243/280 (86%), Gaps = 9/280 (3%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS-----GDPE----TMCPNDGFVYFRN 2495
            LWTGKQLF+VLLRPHA +RVYLNLTV E+ Y++      GD E    TMCPNDGFVY RN
Sbjct: 590  LWTGKQLFNVLLRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRN 649

Query: 2494 SELVSGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDD 2315
            SEL+ GQLGKATLGNGNKDGLYS+LLRDYN+HAAATCMNRLAK+SARWIGN+GFSIGIDD
Sbjct: 650  SELLCGQLGKATLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDD 709

Query: 2314 VQPGESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRET 2135
            VQPG+ LND+K   +   Y KCDE I+ +NEG+L L+PGCDAAQTLEA IT VLN IR+ 
Sbjct: 710  VQPGKRLNDAKGVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDE 769

Query: 2134 AANVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 1955
               VCM+ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF 
Sbjct: 770  TGKVCMRELHWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFH 829

Query: 1954 RKSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            R SKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 830  RGSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 869


>ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Gossypium raimondii]
          Length = 1395

 Score =  600 bits (1546), Expect(2) = 0.0
 Identities = 325/523 (62%), Positives = 385/523 (73%), Gaps = 5/523 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS+HYDNT RNASGCIVQFIYGDDGMDP+ MEGK G PLNF+RL  KVKATCP
Sbjct: 879  LIKALEDLSIHYDNTCRNASGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCP 938

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
                  +    I   + +++ +HD   DG CS AFK S++ FLE    +    +R +++ 
Sbjct: 939  PVDQKYLPADAIPQMLEEQVVKHD--PDGVCSEAFKKSLKGFLEG---QKNELKRVMQLV 993

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
             + +   K++ LE+++  I G+T +QL+VF+  CI RY  K                GEP
Sbjct: 994  SNSAQ--KSEILEDVSHKICGITDRQLEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEP 1051

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMN+T GVPRIKEIIN AK+ISTPIITA LE D     A MVKGR
Sbjct: 1052 GTQMTLKTFHFAGVASMNITQGVPRIKEIINAAKKISTPIITAELEFDSNVNVARMVKGR 1111

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKEQ 933
            IEKT+LGQVAKSIKIV+T+RLAS+V++LDMERIQ +QL IDA+ VKESIL+TPK+KLKEQ
Sbjct: 1112 IEKTVLGQVAKSIKIVMTSRLASVVISLDMERIQDAQLHIDANVVKESILQTPKLKLKEQ 1171

Query: 932  HVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVI----NXXXXXXX 765
            HVKVLDV+KLEV+P  D++R+HFELHSLKN LP VVVKGI TVER VI            
Sbjct: 1172 HVKVLDVKKLEVVPPADRSRIHFELHSLKNLLPLVVVKGIKTVERVVIAEKKKDNKSQNK 1231

Query: 764  XXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKS 585
                 Y L VEG GL+ VMG EG+DG KT SNH+ME+ Q LG           I  TM S
Sbjct: 1232 EAKKLYQLFVEGMGLQTVMGVEGIDGRKTMSNHVMEMLQILGIEAARSCIINEIAATMAS 1291

Query: 584  HGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRD 405
            HGM+ID+RHMMLL D+MTF+GEVLGITRFGIQKM  S+LMLASFEKT DHLFNASVNGRD
Sbjct: 1292 HGMSIDIRHMMLLGDVMTFRGEVLGITRFGIQKMDKSILMLASFEKTGDHLFNASVNGRD 1351

Query: 404  DKIEGVSECIIMGIPMQIGTGILKVRQRVPPVQLSK-GLEPLI 279
            DKIEGV+ECIIMGIPMQ+GTGILKV QRV P+ L + G +P++
Sbjct: 1352 DKIEGVTECIIMGIPMQLGTGILKVMQRVDPLPLLQYGADPVL 1394



 Score =  454 bits (1169), Expect(2) = 0.0
 Identities = 224/280 (80%), Positives = 243/280 (86%), Gaps = 9/280 (3%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS-----GDPE----TMCPNDGFVYFRN 2495
            LWTGKQLF+VLLRPHA +RVYLNLTV E+ Y++      GD E    TMCPNDGFVY RN
Sbjct: 587  LWTGKQLFNVLLRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRN 646

Query: 2494 SELVSGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDD 2315
            SEL+ GQLGKATLGNGNKDGLYS+LLRDYN+HAAATCMNRLAK+SARWIGN+GFSIGIDD
Sbjct: 647  SELLCGQLGKATLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDD 706

Query: 2314 VQPGESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRET 2135
            VQPG+ LND+K   +   Y KCDE I+ +NEG+L L+PGCDAAQTLEA IT VLN IR+ 
Sbjct: 707  VQPGKRLNDAKGVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDE 766

Query: 2134 AANVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFP 1955
               VCM+ELHWRNSPLIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF 
Sbjct: 767  TGKVCMRELHWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFH 826

Query: 1954 RKSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            R SKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 827  RGSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 866


>gb|KDP44150.1| hypothetical protein JCGZ_05617 [Jatropha curcas]
          Length = 1275

 Score =  588 bits (1517), Expect(2) = 0.0
 Identities = 317/531 (59%), Positives = 390/531 (73%), Gaps = 13/531 (2%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIK LEDL + YDN V +A+G +VQF+YGDDG+DP++MEGK GVPLN +RLF KVKATCP
Sbjct: 744  LIKGLEDLFIDYDNKVLSANGSVVQFVYGDDGLDPAKMEGKGGVPLNLDRLFMKVKATCP 803

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFEST------- 1494
            AG+   + PS+I + V   L ++D   D  CS AFK ++  FL   ++R E+        
Sbjct: 804  AGEGDYLSPSDISSWVKTLLDDYDKAFDSVCSEAFKQNLSFFLGNHVKRLETMLKLDNGV 863

Query: 1493 --RRALKMDEDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXX 1320
              + +  M+E   V G T  +E +A  I G+T +QL+VFL+TCI RY  KR         
Sbjct: 864  EEQNSENMEEVGGVRGNTTNIEKLAHKIYGITKRQLEVFLKTCIVRYLWKRIEPGTAIGA 923

Query: 1319 XXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKP 1140
                  GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK+ISTPIIT  LE +   
Sbjct: 924  IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKKISTPIITTELENNTNV 983

Query: 1139 KTATMVKGRIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILR 960
              A +VK RIEKT+LGQ+AKSIKIV+T+R AS+VVTLDM+ IQ +QLS+DA+TV+ESIL+
Sbjct: 984  NAARIVKTRIEKTVLGQIAKSIKIVMTSRSASVVVTLDMKTIQEAQLSLDANTVRESILQ 1043

Query: 959  TPKIKLKEQHVKVLDVRKLEVIPQTDKNRLHFELHSLKNKLPTVVVKGINTVERAVI--- 789
            TP+ KLK Q++KVLD+RKLEVIP  D+ ++HFELHSLKN LP++ VKGI TVERAVI   
Sbjct: 1044 TPRTKLKPQNIKVLDIRKLEVIPLGDREKVHFELHSLKNMLPSITVKGIKTVERAVIAQK 1103

Query: 788  NXXXXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXX 609
                         YN+ VEG GL+ VMGTEGVDG KTTSNH+ME+ + LG          
Sbjct: 1104 KREGKASIQELPTYNMFVEGMGLQEVMGTEGVDGRKTTSNHVMEIFKYLGIEAARKCIID 1163

Query: 608  XIQYTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLF 429
             I+  M+ HGM+ID RHMMLLADLMTFKGEVLGITRFGIQKM  SVLMLASFEKT+DHL+
Sbjct: 1164 EIKNVMEGHGMSIDTRHMMLLADLMTFKGEVLGITRFGIQKMDKSVLMLASFEKTSDHLY 1223

Query: 428  NASVNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRVPP-VQLSKGLEPLI 279
             A+V+GRDD+IEGVSECIIMGIPM++GTGILKV+QRV P   L+KGL+P++
Sbjct: 1224 TAAVHGRDDRIEGVSECIIMGIPMRLGTGILKVQQRVDPRPMLTKGLDPIM 1274



 Score =  466 bits (1198), Expect(2) = 0.0
 Identities = 229/276 (82%), Positives = 247/276 (89%), Gaps = 5/276 (1%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS--GDP---ETMCPNDGFVYFRNSELV 2483
            LWTGKQLFSVLLRP+A++RVYLNLTV EK Y+K   GD    ETMCPNDGFVY RNSEL+
Sbjct: 456  LWTGKQLFSVLLRPNANVRVYLNLTVKEKIYSKPKPGDKREKETMCPNDGFVYIRNSELI 515

Query: 2482 SGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPG 2303
            SGQLGKAT+GNGNKDGLYS+LLRDYN HAAA CMNRLAKLSARWIGN+GFSIGIDDVQPG
Sbjct: 516  SGQLGKATIGNGNKDGLYSILLRDYNPHAAAICMNRLAKLSARWIGNHGFSIGIDDVQPG 575

Query: 2302 ESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANV 2123
            + L D K   I  GY  CD+LI+ YNEG+L+L+PGCDA QTLEAEIT  LN +RE A +V
Sbjct: 576  KKLIDEKAKTISNGYQHCDKLIQEYNEGKLALKPGCDAIQTLEAEITETLNKLREQAGDV 635

Query: 2122 CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSK 1943
            CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GF+DRSLPHFPRKSK
Sbjct: 636  CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFPRKSK 695

Query: 1942 TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 696  TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 731


>ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1 [Cucumis melo]
          Length = 1400

 Score =  600 bits (1547), Expect(2) = 0.0
 Identities = 325/524 (62%), Positives = 383/524 (73%), Gaps = 11/524 (2%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS++YD++VRNA GCIVQF YGDDGMDP+QMEGK G PLNF RLF K KATCP
Sbjct: 872  LIKALEDLSIYYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCP 931

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
            +  +  + PSE    V  RLS+ D + + GCS AF  S++ FL K I+  + +   L  D
Sbjct: 932  SDGNKILSPSEFSETVEDRLSKDDASPECGCSPAFIGSLKIFLNKYIEAQKKSWSTLLAD 991

Query: 1472 EDQSV---------NGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXX 1320
             + +V         N       N+ + I+GVT +QL+VFL+TC+SRYH K+         
Sbjct: 992  NETAVDKSIISSSDNDNIVIRNNVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGA 1051

Query: 1319 XXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKP 1140
                  GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPI+TA L  DD  
Sbjct: 1052 IGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNV 1111

Query: 1139 KTATMVKGRIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILR 960
              A MVK RIEKT LGQ+AK I+IV+++R A I + LDME+I+ ++L +DA+ VK++IL 
Sbjct: 1112 NIARMVKARIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILV 1171

Query: 959  TPKIKLKEQHVKVLDVRKLEVIPQ-TDKNRLHFELHSLKNKLPTVVVKGINTVERAVINX 783
            TPK+KLK +H+ VLD RKL V+PQ  D+N+LHF LH LKN LP VVVKGI TV RAVI  
Sbjct: 1172 TPKLKLKHEHINVLDDRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKE 1231

Query: 782  XXXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXI 603
                        +LLVEGTGL+AVMGTEGVDGC T SNHI+EVQQ LG           I
Sbjct: 1232 EKDKARNAKKF-SLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEI 1290

Query: 602  QYTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNA 423
            +YTM+SHGM+ID+RHMMLL DLMTF+GEVLGITRFGIQKM  SVLMLASFEKTADHLFNA
Sbjct: 1291 KYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1350

Query: 422  SVNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRVP-PVQLSKG 294
            SVNGRDDKIEGVSEC+IMGIPM +GTG+LKVRQRV  P QL  G
Sbjct: 1351 SVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPRQLPYG 1394



 Score =  453 bits (1165), Expect(2) = 0.0
 Identities = 221/275 (80%), Positives = 242/275 (88%), Gaps = 4/275 (1%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNK----SGDPETMCPNDGFVYFRNSELVS 2480
            LWTGKQLFSVL+RPHA M+VYLNLTV EK+Y+K      + ETMCPNDGFVYFRNSEL+S
Sbjct: 585  LWTGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELIS 644

Query: 2479 GQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGE 2300
            GQ+GKATLGNGNKDGLYSVLLRDY +HAAA CMNRLAKLSARWIGN+GFSIGIDDVQPG+
Sbjct: 645  GQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGD 704

Query: 2299 SLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVC 2120
             L   K+  ILEGY  CD+ I  +N G L  + GCDAAQ+LEA+IT +LN IRE  ANVC
Sbjct: 705  QLVXKKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVC 764

Query: 2119 MKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKT 1940
            M+ LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF RK+KT
Sbjct: 765  MQNLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKT 824

Query: 1939 PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 825  PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 859


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis
            sativus]
          Length = 1400

 Score =  600 bits (1548), Expect(2) = 0.0
 Identities = 324/524 (61%), Positives = 382/524 (72%), Gaps = 11/524 (2%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDLS+HYD++VRNA GCIVQF YGDDGMDP+QMEGK G PLNF RLF K KATCP
Sbjct: 872  LIKALEDLSIHYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCP 931

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
            +  +  + PSE    V  RLS+ D + + GCS AF  S++ FL K ++  + +   L  D
Sbjct: 932  SDGNKILSPSEFSETVEDRLSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLAD 991

Query: 1472 EDQSV---------NGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXX 1320
             + +V         N        + + I+GVT +QL+VFL+TC+SRYH K+         
Sbjct: 992  NESAVDKSIISSSDNDNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGA 1051

Query: 1319 XXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKP 1140
                  GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPI+TA L  DD  
Sbjct: 1052 IGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNV 1111

Query: 1139 KTATMVKGRIEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILR 960
              A MVK RIEKT LGQ+AK I+IV+++R A I + LDME+I+ ++L +DA+ VK++IL 
Sbjct: 1112 NIARMVKARIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILV 1171

Query: 959  TPKIKLKEQHVKVLDVRKLEVIPQ-TDKNRLHFELHSLKNKLPTVVVKGINTVERAVINX 783
            TPK+KLK +H+ VLD RKL V+PQ  D+N+LHF LH LKN LP VVVKGI TV RAVI  
Sbjct: 1172 TPKLKLKHEHINVLDDRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKE 1231

Query: 782  XXXXXXXXXXXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXI 603
                        +LLVEGTGL+AVMGTEGVDGC T SNHI+EVQQ LG           I
Sbjct: 1232 EKDKARNAKKF-SLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEI 1290

Query: 602  QYTMKSHGMTIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNA 423
            +YTM+SHGM+ID+RHMMLL DLMTF+GEVLGITRFGIQKM  SVLMLASFEKTADHLFNA
Sbjct: 1291 KYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1350

Query: 422  SVNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRVP-PVQLSKG 294
            SVNGRDDKIEGVSEC+IMGIPM +GTG+LKVRQRV  P QL  G
Sbjct: 1351 SVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYG 1394



 Score =  452 bits (1162), Expect(2) = 0.0
 Identities = 220/275 (80%), Positives = 242/275 (88%), Gaps = 4/275 (1%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNK----SGDPETMCPNDGFVYFRNSELVS 2480
            LWTGKQLFSVL+RPHA M+VYLNLTV EK+Y+K      + ETMCPNDGFVYFRNSEL+S
Sbjct: 585  LWTGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELIS 644

Query: 2479 GQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPGE 2300
            GQ+GKATLGNGNKDGLYSVLLRDY +HAAA CMNRLAKLSARWIGN+GFSIGIDDVQPG+
Sbjct: 645  GQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGD 704

Query: 2299 SLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANVC 2120
             L   K+  ILEGY  CD+ I  +N G L  + GCDAAQ+LE++IT +LN IRE  ANVC
Sbjct: 705  QLVKKKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVC 764

Query: 2119 MKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKT 1940
            M+ LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF RK+KT
Sbjct: 765  MQNLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKT 824

Query: 1939 PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA
Sbjct: 825  PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 859


>ref|XP_010092991.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
            gi|587863463|gb|EXB53229.1| DNA-directed RNA polymerase
            III subunit RPC1 [Morus notabilis]
          Length = 1179

 Score =  619 bits (1597), Expect(2) = 0.0
 Identities = 326/520 (62%), Positives = 396/520 (76%), Gaps = 2/520 (0%)
 Frame = -1

Query: 1832 LIKALEDLSVHYDNTVRNASGCIVQFIYGDDGMDPSQMEGKDGVPLNFNRLFSKVKATCP 1653
            LIKALEDL VHYDNTVRNAS CI+QF YGDDGMDP+ MEGK+G PLNF RLF K KATCP
Sbjct: 658  LIKALEDLFVHYDNTVRNASACIIQFCYGDDGMDPAHMEGKNGAPLNFERLFLKAKATCP 717

Query: 1652 AGQHASMFPSEIRNAVCKRLSEHDMTSDGGCSMAFKDSIENFLEKCIQRFESTRRALKMD 1473
            AG    + P ++   V  RLS+ DMT +GGCS AFK+S+++FL+  ++ F+ T    +  
Sbjct: 718  AGGTEKLSPEKVSELVESRLSKKDMTPEGGCSAAFKNSLKSFLDNYVKAFKRTWDPCEST 777

Query: 1472 EDQSVNGKTKFLENIAEAISGVTSQQLKVFLETCISRYHLKRXXXXXXXXXXXXXXXGEP 1293
            E  +    +   +NI   +SG T++QL+VFL+TCISRYH K+               GEP
Sbjct: 778  EGHAKMENSATTKNIVLQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEP 837

Query: 1292 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITATLECDDKPKTATMVKGR 1113
            GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK+ISTPIITA LECD+    A +V+GR
Sbjct: 838  GTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITAILECDNNVNFARIVRGR 897

Query: 1112 IEKTMLGQVAKSIKIVLTARLASIVVTLDMERIQASQLSIDAHTVKESILRTPKIKLKEQ 933
            IEK  LGQVAKSIK V+T+R+AS+V+TLDMERIQ + LSIDA+ V++SIL+TP+IKLK++
Sbjct: 898  IEKISLGQVAKSIKTVMTSRVASVVITLDMERIQDALLSIDANVVRDSILQTPRIKLKKE 957

Query: 932  HVKVLDVRKLEVIP-QTDKNRLHFELHSLKNKLPTVVVKGINTVERAVINXXXXXXXXXX 756
            H++VLD +KLE++P ++++++L+  L  L   L  ++VKGI TVERAVI+          
Sbjct: 958  HIRVLDFKKLEILPYESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSEKDKKTDIS 1017

Query: 755  XXYNLLVEGTGLRAVMGTEGVDGCKTTSNHIMEVQQTLGXXXXXXXXXXXIQYTMKSHGM 576
              Y LLVEGTGL  VMGTEGVDG  T +NHI+EVQQTLG           I+YTMKSHGM
Sbjct: 1018 KKYKLLVEGTGLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGM 1077

Query: 575  TIDLRHMMLLADLMTFKGEVLGITRFGIQKMKDSVLMLASFEKTADHLFNASVNGRDDKI 396
            +ID RHMMLLAD+MT +GEVLGITRFGIQKM  SVLMLASFEKTADHLFNASVNGR+DKI
Sbjct: 1078 SIDTRHMMLLADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKI 1137

Query: 395  EGVSECIIMGIPMQIGTGILKVRQRVP-PVQLSKGLEPLI 279
            EGVSECIIMGIPMQIGTG++KVRQRV  P  LS G +P++
Sbjct: 1138 EGVSECIIMGIPMQIGTGMIKVRQRVDVPPMLSYGPKPIL 1177



 Score =  431 bits (1107), Expect(2) = 0.0
 Identities = 211/276 (76%), Positives = 234/276 (84%), Gaps = 5/276 (1%)
 Frame = -2

Query: 2647 LWTGKQLFSVLLRPHADMRVYLNLTVTEKTYNKS-----GDPETMCPNDGFVYFRNSELV 2483
            LWTGKQLFSVL+RP+A++RV+LNLTV EK Y+        + ETMCP DGFV FRNSEL+
Sbjct: 370  LWTGKQLFSVLVRPNANVRVFLNLTVREKNYSNKLQENEREFETMCPADGFVCFRNSELI 429

Query: 2482 SGQLGKATLGNGNKDGLYSVLLRDYNSHAAATCMNRLAKLSARWIGNNGFSIGIDDVQPG 2303
            SGQLGK TLGNGNKDGLYS+LLRDY +HAAA CMNRLAKLSARWIGN+GFSIGIDDVQP 
Sbjct: 430  SGQLGKGTLGNGNKDGLYSILLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPS 489

Query: 2302 ESLNDSKRARILEGYGKCDELIKNYNEGRLSLQPGCDAAQTLEAEITGVLNTIRETAANV 2123
            + L D K  +I EG   CD+ IK+Y EG L  +PGCDAAQ+LEA ITG+LN IRE    +
Sbjct: 490  DKLRDEKDQKINEGAKDCDDKIKSYKEGNLPPEPGCDAAQSLEAVITGILNKIREETGKL 549

Query: 2122 CMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSK 1943
            CMK L WRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK K
Sbjct: 550  CMKALPWRNSPLIMSQCGSKGSLINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKDK 609

Query: 1942 TPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTA 1835
            TPAAKGFV++SFY GL+ATEFFFHTMGGREGLVDTA
Sbjct: 610  TPAAKGFVSHSFYDGLSATEFFFHTMGGREGLVDTA 645