BLASTX nr result
ID: Cornus23_contig00006716
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00006716
(2115 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ... 759 0.0
gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin... 728 0.0
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-... 728 0.0
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr... 724 0.0
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac... 722 0.0
ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-... 722 0.0
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ... 716 0.0
ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-... 715 0.0
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ... 707 0.0
ref|XP_011086680.1| PREDICTED: RNA polymerase sigma factor sigB ... 707 0.0
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor... 703 0.0
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ... 700 0.0
ref|XP_009599122.1| PREDICTED: RNA polymerase sigma factor sigB-... 699 0.0
emb|CDP07629.1| unnamed protein product [Coffea canephora] 699 0.0
ref|XP_009761599.1| PREDICTED: RNA polymerase sigma factor sigB-... 698 0.0
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 694 0.0
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB ... 694 0.0
gb|AKC88655.1| sigma factor [Francoa sonchifolia] 693 0.0
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-... 690 0.0
ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB ... 685 0.0
>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
gi|296090195|emb|CBI40014.3| unnamed protein product
[Vitis vinifera]
Length = 575
Score = 759 bits (1959), Expect = 0.0
Identities = 397/580 (68%), Positives = 443/580 (76%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXTVLD 1740
MSCLLPQFKC PD+FS H K H L KNRE +YFR QC VLD
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLHI-----LSKNREAIYFRVQCALSTTSPPLSTSTTAVLD 55
Query: 1739 MEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1560
+EKL+LP LE+HSN V A+RPWTYIG GPP
Sbjct: 56 IEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEA 115
Query: 1559 XXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVGVVGESK 1380
+V +NNS KS++KP + LS D QF + E R+G++G+S
Sbjct: 116 VALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSV 175
Query: 1379 EAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXX 1200
AET ++ SLQ +++DDLEPT EELELL+A+ SKSI VRSNRQ
Sbjct: 176 GAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEK 235
Query: 1199 XXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLK 1020
A +VSV+ GSTSRRKR SLQ++DYSDPLRYLRGTTS+SRLLTATEE +LSEGIQ LLK
Sbjct: 236 ASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLK 295
Query: 1019 LEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKN 840
LEKLQ++L ER G +PT AQWAAAAGVDQ+TLR R N+GIRCKDKMIKSNIRLVISIAKN
Sbjct: 296 LEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKN 355
Query: 839 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 660
YQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 356 YQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415
Query: 659 FHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGF 480
FHMVEATYRVKEARKQ SENGRHPNNEEVAEATGLSMKRL AVLLTPKAPRSLDQKIG
Sbjct: 416 FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGI 475
Query: 479 NQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTL 300
NQNLKPSEV ADP+AET+EELLIKQFM++DL+KVL++LNPRE+QVIRWR+G+EDGR KTL
Sbjct: 476 NQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTL 535
Query: 299 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL+S
Sbjct: 536 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
Length = 605
Score = 728 bits (1880), Expect = 0.0
Identities = 391/586 (66%), Positives = 434/586 (74%), Gaps = 3/586 (0%)
Frame = -2
Query: 1928 NRKMSCLLPQFKCLPDSFSIHVKT---HHQATTQLQKNREPVYFRTQCIXXXXXXXXXXX 1758
N+ MSCLLPQFKC PD+FSIH +T H ++ K++EP+ FRT C+
Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTA 80
Query: 1757 XXTVLDMEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXX 1578
TVLD+EKL+LP LEAHSN V ANR WTY GA GP
Sbjct: 81 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140
Query: 1577 XXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVG 1398
MV+ +NS K SKP I S AD +L E R
Sbjct: 141 ASAEAVALARAAVKVAKDAAL-MVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERAS 198
Query: 1397 VVGESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXX 1218
++G+S E E YS Q PL ++ DLEPTHEEL+LL+ Q+S+SIAVRS RQT
Sbjct: 199 IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258
Query: 1217 XXXXXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEG 1038
A+++SVK GSTSRRKR S+Q++DYSDPLRYLR TTSSSRLLTA EE LS G
Sbjct: 259 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318
Query: 1037 IQGLLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLV 858
IQ LLKLE L++ L ERCGG PT AQWAAAAGVDQR LR RLN+GI CKDKMI SNIRLV
Sbjct: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
Query: 857 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 678
ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
Query: 677 RTIRLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSL 498
RTIRLPFHMVEATYRVKEARKQ SENGRHPNNEEVAEATGLSMKRL AVLL+PKAPRSL
Sbjct: 439 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 498
Query: 497 DQKIGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMED 318
DQKIG NQNLKPSEV ADPEAET+E+LLIK+FMK+DL+KVLDTLNPRERQV+RWRFG+ED
Sbjct: 499 DQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558
Query: 317 GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
GRMKTLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY ++
Sbjct: 559 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
sinensis]
Length = 605
Score = 728 bits (1879), Expect = 0.0
Identities = 391/586 (66%), Positives = 433/586 (73%), Gaps = 3/586 (0%)
Frame = -2
Query: 1928 NRKMSCLLPQFKCLPDSFSIHVKT---HHQATTQLQKNREPVYFRTQCIXXXXXXXXXXX 1758
N+ MSCLLPQFKC PD+FSIH +T H ++ K++EP+ FRT C+
Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTA 80
Query: 1757 XXTVLDMEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXX 1578
TVLD+EKL+LP LEAHSN V ANR WTY GA GP
Sbjct: 81 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140
Query: 1577 XXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVG 1398
MV+ +NS K SKP LS AD +L E R
Sbjct: 141 ASAEAVALARAAVKVAKDAAL-MVNHHNSAKPKSKPAISLS-ADTNTSMWAQLTERERAS 198
Query: 1397 VVGESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXX 1218
++G+S E E YS Q PL ++ DLEPTHEEL+LL+ Q+S+SIAVRS RQT
Sbjct: 199 IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258
Query: 1217 XXXXXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEG 1038
A+++SVK GSTSRRKR S+Q++DYSDPLRYLR TTSSSRLLTA EE LS G
Sbjct: 259 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318
Query: 1037 IQGLLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLV 858
IQ LLKLE L++ L ERCGG PT AQWAAAAGVDQR LR RLN+GI CKDKMI SNIRLV
Sbjct: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
Query: 857 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 678
ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
Query: 677 RTIRLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSL 498
RTIRLPFHMVEATYRVKEARKQ SENGRHPNNEEVAEATGLSMKRL AVLLTPKAPRSL
Sbjct: 439 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSL 498
Query: 497 DQKIGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMED 318
DQK G NQNLKPSEV ADPEAET+E+LLIK+FMK+DL+KVLDTLNPRERQV+RWRFG+ED
Sbjct: 499 DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558
Query: 317 GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
GRMKTLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY ++
Sbjct: 559 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
gi|557539534|gb|ESR50578.1| hypothetical protein
CICLE_v10030998mg [Citrus clementina]
Length = 605
Score = 724 bits (1868), Expect = 0.0
Identities = 388/586 (66%), Positives = 432/586 (73%), Gaps = 3/586 (0%)
Frame = -2
Query: 1928 NRKMSCLLPQFKCLPDSFSIHVKT---HHQATTQLQKNREPVYFRTQCIXXXXXXXXXXX 1758
N+ MSCLLPQFKC PD+FSIH +T H ++ K++EP+ FRT C+
Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTA 80
Query: 1757 XXTVLDMEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXX 1578
TVLD+EKL+LP LEAHSN V ANR WTY GA GP
Sbjct: 81 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140
Query: 1577 XXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVG 1398
MV+ +NS K SKP LS AD +L E R
Sbjct: 141 ASAEAVALARAAVKVAKDAAL-MVNHHNSAKPKSKPAISLS-ADTSTSMWAQLTERERAS 198
Query: 1397 VVGESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXX 1218
++G+S E E YS Q PL ++ DLEPTHEEL+LL+ Q+S+SIAVRS RQT
Sbjct: 199 IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258
Query: 1217 XXXXXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEG 1038
A+++SVK GST+RRKR S+Q++DYSDPLRYLR TTSSSRLLTA EE LS G
Sbjct: 259 TRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318
Query: 1037 IQGLLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLV 858
IQ LLKLE L++ L ERCGG PT AQWAAAAGVDQR LR RLN+GI CKDKMI SNIRLV
Sbjct: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
Query: 857 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 678
ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
Query: 677 RTIRLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSL 498
RTIRLPFHMVEATYRVKEARKQ SENGRHPNNEEVA+ATGLSMKRL AVLL PKAPRSL
Sbjct: 439 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSL 498
Query: 497 DQKIGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMED 318
DQK G NQNLKPSEV ADPEAET+E+LLIK+FMK+DL+KVLDTLNPRERQV+RWRFG+ED
Sbjct: 499 DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558
Query: 317 GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
GRMKTLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY ++
Sbjct: 559 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
[Theobroma cacao]
Length = 623
Score = 722 bits (1864), Expect = 0.0
Identities = 391/621 (62%), Positives = 442/621 (71%), Gaps = 41/621 (6%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQ-----ATTQ--------------------------- 1836
MSCLLPQFKC PD+FSI +THH A T
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60
Query: 1835 -LQKNREPVYFRTQCIXXXXXXXXXXXXXTVLDMEKLKLPYLEAHSNPVTANRPWTYIGA 1659
L K++E + FRTQC+ VLD+EKL+LP EAH N V +RPWTYIGA
Sbjct: 61 VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120
Query: 1658 TGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSD 1479
TGPP +M N K++
Sbjct: 121 TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180
Query: 1478 SKPTTILSEADPFQFETDELAEIARVGVVGESKEAETEFLENYSLQYPLKEADDLEPTHE 1299
K + + D F + E R G++G+S E+E E+ S Q E+D+LEPT+E
Sbjct: 181 MK-SGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNE 239
Query: 1298 ELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASIVSVKPGSTSRRKRASLQDIDYS 1119
ELE L+ QLS+SIAVRS RQT A++VSVK GST+R++R +LQD+DYS
Sbjct: 240 ELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYS 299
Query: 1118 DPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQDELVERCGGQPTIAQWAAAAGV 939
DPLRYLRGTTS+SRLLTA EE +LSEGIQ LLKLE+LQ+EL ERCGGQPT AQWAAAAGV
Sbjct: 300 DPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGV 359
Query: 938 DQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 759
DQ+TLR+RLN+G+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD
Sbjct: 360 DQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 419
Query: 758 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFQSENGRHPNN 579
ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ SENGRHP+N
Sbjct: 420 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDN 479
Query: 578 EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLKPS--------EVTADPEAETSE 423
EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIG NQNLKPS EV ADPEAET+E
Sbjct: 480 EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAE 539
Query: 422 ELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES 243
++LIKQFM++DL+KVLD+L+ RERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES
Sbjct: 540 DMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES 599
Query: 242 CAFRKLKNKRRTKHLQQYLMS 180
CAFRKLKNK+RTKHLQQYL+S
Sbjct: 600 CAFRKLKNKKRTKHLQQYLLS 620
>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
Length = 572
Score = 722 bits (1863), Expect = 0.0
Identities = 391/584 (66%), Positives = 439/584 (75%), Gaps = 4/584 (0%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTH----HQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXX 1752
M+CLLPQFKC PD+ SIH KTH H + K R+ + FRTQCI
Sbjct: 1 MACLLPQFKCSPDTLSIHFKTHQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTT-- 58
Query: 1751 TVLDMEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXX 1572
V+D EKL++P LEAH V A+RP TYIGA PP
Sbjct: 59 -VVDDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAAA 117
Query: 1571 XXXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVGVV 1392
+MVS N S+KSD P I SE D + ET +L EI +V +V
Sbjct: 118 AVEAVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEIEQVDMV 177
Query: 1391 GESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXX 1212
S AE+ P +++D L+PT EEL+LLQ QLSKSIAVRS RQT
Sbjct: 178 HHSLGAESR---------PKEDSDYLDPTDEELKLLQMQLSKSIAVRSGRQTERRARRAR 228
Query: 1211 XXXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQ 1032
A++V+VK GS+SR+KR++LQD+DYSDPLRYLRGTTS+SRLLTATEE + SEGIQ
Sbjct: 229 AAEKVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQ 288
Query: 1031 GLLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVIS 852
LLKLEKL +EL ER GGQPT AQWAAAAG+DQ+TLR RLN+GI CKDKMIKSNIRLVIS
Sbjct: 289 DLLKLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVIS 348
Query: 851 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 672
IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 349 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 408
Query: 671 IRLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQ 492
IRLPFHMVEATYRV+EARKQ SENGRHP+NEEVAEATGLSMKRLTAVLLTPKAPRSLDQ
Sbjct: 409 IRLPFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQ 468
Query: 491 KIGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGR 312
KIG NQNLKPSEV ADP+AET+EELL+K+FMKQDL+KVLD+LNPRE+QVIRWRFG+EDGR
Sbjct: 469 KIGINQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDGR 528
Query: 311 MKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
MKTLQEIGELMGVSRERIRQIESCAFRKLKNK+RTK+LQQYL+S
Sbjct: 529 MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572
>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
EUGRSUZ_D01094 [Eucalyptus grandis]
Length = 588
Score = 716 bits (1849), Expect = 0.0
Identities = 382/584 (65%), Positives = 430/584 (73%), Gaps = 2/584 (0%)
Frame = -2
Query: 1925 RKMSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXT- 1749
R SCLLPQFKC PD+FSI +TH QKNRE YFR QC+ T
Sbjct: 12 RMSSCLLPQFKCQPDTFSIQFRTH------AQKNRETTYFRAQCLLSATSPSTLSSAATA 65
Query: 1748 -VLDMEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXX 1572
VLDMEKL+LP LE ++ T+NRPWTY GA GPP
Sbjct: 66 VVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEAVIAAA 125
Query: 1571 XXXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVGVV 1392
+M+ +S+ D+K + S + EL E+ ++
Sbjct: 126 ASEAVTLAKAALKSAKHAALMIRNESSSNIDNK-LELSSRTSTSLSKHAELLELEHSNIL 184
Query: 1391 GESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXX 1212
E E E E +QY +++DLEPTHEEL+LLQ QL KSIAVRS RQT
Sbjct: 185 TELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKEIRER 244
Query: 1211 XXXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQ 1032
A++VSVK GS S++KRA+LQ++DYSDPLRYLRGTTSSSRLLTATEE +LSEGIQ
Sbjct: 245 AAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELSEGIQ 304
Query: 1031 GLLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVIS 852
LLKLE+LQ EL ERCGG+P AQWAAAAGVDQ+TLR RLN+G CKDKMIKSNIRLVIS
Sbjct: 305 DLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIRLVIS 364
Query: 851 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 672
IAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 365 IAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 424
Query: 671 IRLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQ 492
IRLPFHMVEATYRVKEARKQ SENGR P+NEEVAEATGLSMKRL AVL+TPKAPRSLDQ
Sbjct: 425 IRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPRSLDQ 484
Query: 491 KIGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGR 312
KIG NQNLKPSEV ADP AETSE++L+KQFM+QDL+KVLDTLNPRE+QV+RWRFG+EDGR
Sbjct: 485 KIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGR 544
Query: 311 MKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
MKTLQEIGELMGVSRERIRQIESCAFRKLKNK+RTKHLQQY+++
Sbjct: 545 MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588
>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
nucifera]
Length = 584
Score = 715 bits (1846), Expect = 0.0
Identities = 376/586 (64%), Positives = 440/586 (75%), Gaps = 7/586 (1%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTH-------HQATTQLQKNREPVYFRTQCIXXXXXXXXXX 1761
M+CLLPQFKC PD+ SIH +TH H K+R+ + F+TQC+
Sbjct: 1 MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTT 60
Query: 1760 XXXTVLDMEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXX 1581
++D+EKL++P LE+HS V ++RP +YIGATGPP
Sbjct: 61 T---LVDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALI 117
Query: 1580 XXXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARV 1401
+MV+ +S++S++ P+ SE+ F+ E +L E V
Sbjct: 118 AAAAAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEV 177
Query: 1400 GVVGESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXX 1221
G + S E+ E S+Q+ K++D L+ + EE +LLQ QL KSIAVRS RQT
Sbjct: 178 GRIDHSVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQAR 237
Query: 1220 XXXXXXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSE 1041
+++SVK G +SR++RA+LQDIDYSDPLRYLRGTTS+SRLLTATEE +LSE
Sbjct: 238 RARAMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSE 297
Query: 1040 GIQGLLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRL 861
GIQ LLKLEKL +EL ERCGGQPT AQWAAAAGVDQ+TLR RLN+GI CKDKMIKSNIRL
Sbjct: 298 GIQDLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRL 357
Query: 860 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 681
VISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 358 VISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 417
Query: 680 SRTIRLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRS 501
SRTIRLPFHMVEATYRV+EA+KQ SENGRHP+NEEVAEATGLSMKRLTAVLLTPKAP S
Sbjct: 418 SRTIRLPFHMVEATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPIS 477
Query: 500 LDQKIGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGME 321
LDQKIG NQ++KPSE+ ADP+AET+EELLIKQFMKQDL+KVLD+LNPRE+QVIRWRFGME
Sbjct: 478 LDQKIGMNQDMKPSEIIADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 537
Query: 320 DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLM 183
DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK+LQQY++
Sbjct: 538 DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKNLQQYVI 583
>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
polymerase sigma factor sigB [Jatropha curcas]
gi|643732514|gb|KDP39610.1| hypothetical protein
JCGZ_02630 [Jatropha curcas]
Length = 577
Score = 707 bits (1826), Expect = 0.0
Identities = 377/583 (64%), Positives = 437/583 (74%), Gaps = 3/583 (0%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATT---QLQKNREPVYFRTQCIXXXXXXXXXXXXXT 1749
MSCLLPQFKC PD+FSIH +TH+ + Q K+REPV FR QCI
Sbjct: 1 MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTA--- 57
Query: 1748 VLDMEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXXX 1569
VLD+EKL+LP EAH + + AN PWTY+G+ GPP
Sbjct: 58 VLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKETFGSTLATETLITGDDAVIAAAAA 117
Query: 1568 XXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVGVVG 1389
+V S++++SK I S AD + E R ++G
Sbjct: 118 EAVALARAAAKVAKDAAI-LVKSFPSSEAESK-LEIPSIAD-VSSRWPQFTETDRARIIG 174
Query: 1388 ESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXX 1209
+S AET E + +Q+P KE+D LEPTHEELELLQ QLS+ IAVRS RQT
Sbjct: 175 DSVTAETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERRTRA 234
Query: 1208 XXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQG 1029
A+++S K GSTS++KR LQ++DYSDPLRYLRGTTS+S+LLTATEE +LSEGIQ
Sbjct: 235 AEKAAANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQD 294
Query: 1028 LLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISI 849
LLKLE+L +EL ERCGGQPT QWAAAAGVDQ+TLRTRLN+GI CKD+MIKSNIRLVISI
Sbjct: 295 LLKLERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISI 354
Query: 848 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 669
AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 355 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 414
Query: 668 RLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQK 489
RLPFHMVEATYRVKEARKQ SENGR+P++EEVAEATGLSMKRL+AVLLTPKAPRSLDQK
Sbjct: 415 RLPFHMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSLDQK 474
Query: 488 IGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRM 309
IG N +LKPSE+ ADP+AET+E+LL+KQFMKQDL+KVLD+L+PRE QVIRWRFG+EDGR+
Sbjct: 475 IGINMDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLEDGRI 534
Query: 308 KTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
KTLQEIGE+MGVSRERIRQIES AFRKLK K+RTK L+QYL++
Sbjct: 535 KTLQEIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLVA 577
>ref|XP_011086680.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Sesamum
indicum]
Length = 613
Score = 707 bits (1825), Expect = 0.0
Identities = 380/612 (62%), Positives = 438/612 (71%), Gaps = 33/612 (5%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXTVLD 1740
MSCLLPQFKC PD+F+++ K+ + K+RE FRTQCI TVLD
Sbjct: 1 MSCLLPQFKCSPDTFAVNFKSQSHTSVYSSKSREATSFRTQCILSTTPPPTLTATTTVLD 60
Query: 1739 MEKLKL---------------------------------PYLEAHSNPVTANRPWTYIGA 1659
EKL+L P L+AH AN+PWTY+GA
Sbjct: 61 FEKLQLSSLEAIPNQVPADRSWSTPTSSAKTAMLDLEGLPSLDAHPITTAANKPWTYVGA 120
Query: 1658 TGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSD 1479
PP +MVS + TKS+
Sbjct: 121 IAPPSEVTLGANLDTETLLTSEEAVIAAAASEALALAKAAVKVAKDAAMMVSHHKPTKSN 180
Query: 1478 SKPTTILSEADPFQFETDELAEIARVGVVGESKEAETEFLENYSLQYPLKEADDLEPTHE 1299
S T + ++ + FE ++LA +A + ++K AE ENY + L E+DD+EP+ E
Sbjct: 181 SSATGMFADVNTPIFEKNQLAHLAERVDIRDAKVAEVGLGENYPAAHSLTESDDVEPSAE 240
Query: 1298 ELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASIVSVKPGSTSRRKRASLQDIDYS 1119
ELE L+AQLSKSIAVRS RQT A+IVSVK GS+SR+KR+++QD+DYS
Sbjct: 241 ELEFLEAQLSKSIAVRSKRQTERRARRTRAAEKAAANIVSVKSGSSSRKKRSAVQDVDYS 300
Query: 1118 DPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQDELVERCGGQPTIAQWAAAAGV 939
DPLRYLRGTTSSSRLLTA+EE LS GIQ LLKLE+LQ EL +R GGQPT AQWAAAAGV
Sbjct: 301 DPLRYLRGTTSSSRLLTASEEQVLSSGIQVLLKLERLQMELTQRYGGQPTFAQWAAAAGV 360
Query: 938 DQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 759
DQ+TLR ++N+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD
Sbjct: 361 DQKTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 420
Query: 758 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFQSENGRHPNN 579
A+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ SENGRHP++
Sbjct: 421 ATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDD 480
Query: 578 EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLKPSEVTADPEAETSEELLIKQFM 399
EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIG NQ+LKPS+V ADPEAET+E+LLIKQFM
Sbjct: 481 EEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETAEDLLIKQFM 540
Query: 398 KQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 219
KQDL KVLD+LNPRE+QV+ WRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN
Sbjct: 541 KQDLAKVLDSLNPREKQVVIWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 600
Query: 218 KRRTKHLQQYLM 183
K+RTKHLQQY+M
Sbjct: 601 KKRTKHLQQYVM 612
>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
Length = 578
Score = 703 bits (1814), Expect = 0.0
Identities = 374/580 (64%), Positives = 427/580 (73%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXTVLD 1740
MSCLLPQFKC PD+FSI + HH + K++E + FR+QC+ VLD
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRAHH---SHHSKHKESICFRSQCVLSTTSSTSTATTA-VLD 56
Query: 1739 MEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1560
+EKL+LP EAHSN V +RPWTY GATGPP
Sbjct: 57 VEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEA 116
Query: 1559 XXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVGVVGESK 1380
+MV ++S K++ K S D + E R G+VG+
Sbjct: 117 VALARAAAKVAKDAAIMVKNHSSAKTEMKSPGS-SATDTLTSKWGLFTEAERAGIVGDYV 175
Query: 1379 EAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXX 1200
E E E+ Q KE+D+LEPT+EEL+LL+ QLS+SIAVRSNRQ
Sbjct: 176 SDELEMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKAKRTRAAEK 235
Query: 1199 XXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLK 1020
++VSVK GST+R++R +LQDIDYSDPLRYLRGTT++S+LLTA EE +LSEGIQ LLK
Sbjct: 236 AATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLK 295
Query: 1019 LEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKN 840
LE L +EL ERCG PT AQWAAAA VD++TLR RLN+G CKDKMIKSNIRLVISIAKN
Sbjct: 296 LEVLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIRLVISIAKN 355
Query: 839 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 660
YQGAGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 356 YQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415
Query: 659 FHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGF 480
FHMVEATYRVKEARKQ SENGR P+N EVAEATGLSMKRLTAVLL PKAPRSLDQKIG
Sbjct: 416 FHMVEATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGI 475
Query: 479 NQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTL 300
NQNLKPSEV ADPEA+++E++L+KQFMK+DL+KVLD+L+PRERQVIRWRFGMEDGRMKTL
Sbjct: 476 NQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRMKTL 535
Query: 299 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
QEIGE MGVSRERIRQIE CAFRKLKNKRRTKHLQQYL+S
Sbjct: 536 QEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575
>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
gi|763778947|gb|KJB46070.1| hypothetical protein
B456_007G347300 [Gossypium raimondii]
Length = 578
Score = 700 bits (1807), Expect = 0.0
Identities = 372/580 (64%), Positives = 427/580 (73%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXTVLD 1740
MSCLLPQFKC PD+FSI + HH + K++E + FR+QC+ VLD
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRAHH---SHHSKHKESICFRSQCVLSTTSSTSMATTA-VLD 56
Query: 1739 MEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1560
+EKL+LP EAHSN V +RPWTY GATGPP
Sbjct: 57 VEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEA 116
Query: 1559 XXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVGVVGESK 1380
+MV + S K++ K S D + E R G+VG+
Sbjct: 117 VALARAAAKVAKDAAIMVKNHGSAKTEMKSPGS-SATDTLTSKWGLFTEAERAGIVGDYV 175
Query: 1379 EAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXX 1200
E E E++ Q KE+D+LEPT+EEL+LL+ QLS+SIAVRS+RQT
Sbjct: 176 SDELELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEK 235
Query: 1199 XXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLK 1020
++VSVK GST+R++R +LQDIDYSDPLRYLRGTT++S+LLTA EE +LSEGIQ LLK
Sbjct: 236 AATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLK 295
Query: 1019 LEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKN 840
LE L +EL ERCG PT AQWAAAA VD++TLR RLN+G C DKMIKSNIRLVISIAKN
Sbjct: 296 LEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKN 355
Query: 839 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 660
YQGAGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 356 YQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415
Query: 659 FHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGF 480
FHMVEATYRVKEARKQ SENGR P+N EVAEATGLSMKRLTAVLL PKAPRSLDQKIG
Sbjct: 416 FHMVEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGI 475
Query: 479 NQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTL 300
NQNLKPSEV ADPEA+++E++L+KQFMK+DL+KVLD+L+PRERQVIRWRFGMEDGR+KTL
Sbjct: 476 NQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTL 535
Query: 299 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
QEIGE MGVSRERIRQIE CAFRKLKNKRRTKHLQQYL+S
Sbjct: 536 QEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575
>ref|XP_009599122.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nicotiana
tomentosiformis]
Length = 641
Score = 699 bits (1804), Expect = 0.0
Identities = 383/633 (60%), Positives = 441/633 (69%), Gaps = 37/633 (5%)
Frame = -2
Query: 1973 IHKYDMYIYKYI*VNNRKMSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQC 1794
+ YD I Y R MS LLPQFK LPD+F + KT+ +T QL K R+ ++ RTQC
Sbjct: 7 VSPYDPLIPVYDFRVERNMSYLLPQFKSLPDTFVLCFKTNQNSTIQLSKGRDHIHLRTQC 66
Query: 1793 IXXXXXXXXXXXXXTVLDMEKLKLPYLEAHSNPVTA------------------------ 1686
I TVLD+EKLKLP +E S+ V A
Sbjct: 67 ILATTSAATSTATSTVLDIEKLKLPSIEILSSSVAAERSWKPPSTATSAVLDIPRLKLLS 126
Query: 1685 ----------NRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1536
+RPWTY G GPP
Sbjct: 127 FEANPDSVAPDRPWTYTGPVGPPTEANTKSVLATENLVTSDEAVVAAAAAEAVALAKAAL 186
Query: 1535 XXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELA---EIARVGVVGESKEAETE 1365
++V NN SD LSEA FE+ LA E RVGV E K +E +
Sbjct: 187 KFAKDVVLLVGHNNLKNSDDAGRGTLSEARTTPFESVHLAQPSETGRVGVGAEFKGSEMK 246
Query: 1364 FLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASI 1185
+ E+ L+ L ++DDL+P+ EELE+LQ+QLS IAV+S RQT A++
Sbjct: 247 WSESSLLEDSLTDSDDLDPSPEELEILQSQLSNVIAVKSTRQTERKARRGRAAERAAANV 306
Query: 1184 VSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQ 1005
VSVK GSTSR+KR S+Q++DYSDPLRYLRGTT SSRLLTA+EE +LS GIQ LKLE+L+
Sbjct: 307 VSVKSGSTSRKKRTSVQEVDYSDPLRYLRGTTGSSRLLTASEEQELSRGIQDQLKLERLE 366
Query: 1004 DELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAG 825
EL +RCGGQPTIAQWAAAAGV+Q+TLR RLN+GI CKDKMIKSN+RLVISIAKNYQG G
Sbjct: 367 QELADRCGGQPTIAQWAAAAGVEQKTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVG 426
Query: 824 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 645
MNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE
Sbjct: 427 MNLQDLVQEGCRGLVRGAEKFDAAKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 486
Query: 644 ATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLK 465
ATYRVKEARKQ +ENGR PN+EEVAEATGLSMKRLTAV+LTPKAPRSLDQKIGFNQ+LK
Sbjct: 487 ATYRVKEARKQLFTENGRLPNDEEVAEATGLSMKRLTAVMLTPKAPRSLDQKIGFNQSLK 546
Query: 464 PSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGE 285
PSEV ADPEAETSEE+L+KQFM+QDL++VLDTLNPRE+QV++WRFG+ DGRMKTLQEIGE
Sbjct: 547 PSEVIADPEAETSEEMLMKQFMRQDLERVLDTLNPREKQVVKWRFGLADGRMKTLQEIGE 606
Query: 284 LMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 186
LMGVSRERIRQIESCAFRKLKNK+RTK LQQY+
Sbjct: 607 LMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 639
>emb|CDP07629.1| unnamed protein product [Coffea canephora]
Length = 615
Score = 699 bits (1803), Expect = 0.0
Identities = 379/615 (61%), Positives = 430/615 (69%), Gaps = 35/615 (5%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXT--- 1749
MSCLLPQF+CLPD+F + K+H + QL KNR+P++ RTQCI
Sbjct: 1 MSCLLPQFRCLPDAFGVAFKSHQHSAPQLSKNRDPIHVRTQCILSTTSAPTSAASTVLDI 60
Query: 1748 ------------------------------VLDMEKLKLPYLEAHSNPVTANRPWTYIGA 1659
VL MEKLKL LEAHS+ VTANRPWTY G
Sbjct: 61 EKLRLLSLEANSNSVSDGSWKAPKSPAMAAVLVMEKLKLISLEAHSDSVTANRPWTYNGP 120
Query: 1658 TGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSD 1479
+MV N T+ +
Sbjct: 121 VDSAIKPNLGATLATESLIANEEAVIAAAAAEAVALAKAALKVAKDAAMMVDHGNLTEPE 180
Query: 1478 SKPTTILSEADPFQFETDELAEIA-RVGVVGESKEAETEFLENYSLQYPLKEADDLEPTH 1302
SK LSE+ L ++ RV +GE A E EN+S+ YP E+DD+EPT+
Sbjct: 181 SKAMDTLSESSDVLSNRALLGQLEKRVSTIGEINIAGVELGENHSIWYPFTESDDMEPTN 240
Query: 1301 EELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASIVSVKP-GSTSRRKRASLQDID 1125
EELELLQ QL ++AVRS RQ AS VSVK GSTSR+KR+S+Q+ID
Sbjct: 241 EELELLQEQLLNNVAVRSKRQKERKARRARAAERAAASAVSVKSSGSTSRKKRSSIQEID 300
Query: 1124 YSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQDELVERCGGQPTIAQWAAAA 945
YSDPLRYLRGT ++SRLLTA+EE +LSEGIQ LLKLE L +EL +RCG +PT AQWAAAA
Sbjct: 301 YSDPLRYLRGTATTSRLLTASEEQELSEGIQDLLKLETLHEELAQRCGAEPTFAQWAAAA 360
Query: 944 GVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 765
GVDQ+TLR RLN+G KDKMI SNIRLVISIA+NYQGAGMNLQDLVQEGCRGLVRGAEK
Sbjct: 361 GVDQKTLRKRLNYGTLSKDKMIMSNIRLVISIARNYQGAGMNLQDLVQEGCRGLVRGAEK 420
Query: 764 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFQSENGRHP 585
FDA KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQ SENGRHP
Sbjct: 421 FDAKKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSENGRHP 480
Query: 584 NNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLKPSEVTADPEAETSEELLIKQ 405
++EEVAEA GLSMKRL+AV+LTPKAP+SLDQKIG NQNLKPSEV ADPEAETSE+LL+K+
Sbjct: 481 DDEEVAEAAGLSMKRLSAVMLTPKAPKSLDQKIGINQNLKPSEVIADPEAETSEDLLVKR 540
Query: 404 FMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKL 225
FM+QDL+KVL+TLNPRERQVIRWRFG+ DGRMKTLQEIGELMGVSRERIRQIESCAFRKL
Sbjct: 541 FMRQDLEKVLNTLNPRERQVIRWRFGLGDGRMKTLQEIGELMGVSRERIRQIESCAFRKL 600
Query: 224 KNKRRTKHLQQYLMS 180
KNKRRTKHLQQYL+S
Sbjct: 601 KNKRRTKHLQQYLLS 615
>ref|XP_009761599.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nicotiana
sylvestris]
Length = 629
Score = 698 bits (1802), Expect = 0.0
Identities = 384/628 (61%), Positives = 440/628 (70%), Gaps = 37/628 (5%)
Frame = -2
Query: 1958 MYIYKYI*VNNRKMSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXX 1779
M +Y++ V MS LLPQFK LPD+F + KT+ +T QL K R+ ++ RTQCI
Sbjct: 1 MPVYEFR-VERNSMSYLLPQFKSLPDTFVLCFKTNQNSTIQLSKGRDHIHLRTQCILATT 59
Query: 1778 XXXXXXXXXTVLDMEKLKLPYLEAHSNPVTA----------------------------- 1686
TVLD+EKLKLP +E S+ V A
Sbjct: 60 SAATSTATSTVLDIEKLKLPSIEILSSSVAAERSWKPPSTATSAVLDIPRLKLLSFEANP 119
Query: 1685 -----NRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1521
+RPWTY GA GPP
Sbjct: 120 DSVAPDRPWTYTGAVGPPTEANTKSALATENLVTSDEAVVAAAAAEAVALAKAALKFAKD 179
Query: 1520 XXVMVSQNNSTKSDSKPTTILSEADPFQFETDELA---EIARVGVVGESKEAETEFLENY 1350
++V NN SD LSEA FE+ LA E RV V E K +E ++ E+
Sbjct: 180 AVLLVGHNNLKNSDDAGRGTLSEARTTPFESVPLAQPSETGRVRVGAEFKGSEMKWSESS 239
Query: 1349 SLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASIVSVKP 1170
+ L ++DDLEP+ EELE+LQ+QLS IAV+S RQT A++VSVK
Sbjct: 240 LFEDSLTDSDDLEPSPEELEILQSQLSNVIAVKSTRQTERKARRGRAAERAAANVVSVKS 299
Query: 1169 GSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQDELVE 990
GSTSR+KR S+Q++DYSDPLRYLRGTT SSRLLTA+EE +LS GIQ LLKLE+L+ EL
Sbjct: 300 GSTSRKKRTSVQEVDYSDPLRYLRGTTGSSRLLTASEEQELSRGIQDLLKLERLEQELAA 359
Query: 989 RCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQD 810
RCGGQPTIAQWAAAAGV+Q+TLR RLN+GI CKDKMIKSNIRLVISIAKNYQG GMNLQD
Sbjct: 360 RCGGQPTIAQWAAAAGVEQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGVGMNLQD 419
Query: 809 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 630
LVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV
Sbjct: 420 LVQEGCRGLVRGAEKFDAAKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 479
Query: 629 KEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLKPSEVT 450
KEARKQ +ENGR PN+EEVAEATGLSMKRLTAV+LTPKAPRSLDQKIGFNQ+LKPSEV
Sbjct: 480 KEARKQLFTENGRLPNDEEVAEATGLSMKRLTAVMLTPKAPRSLDQKIGFNQSLKPSEVI 539
Query: 449 ADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGELMGVS 270
ADPEAETSEE+L+KQFM+QDL+KVLDTLNPRE+QV++WRFG+ DGRMKTLQEIGELMGVS
Sbjct: 540 ADPEAETSEEMLMKQFMRQDLEKVLDTLNPREKQVVKWRFGLADGRMKTLQEIGELMGVS 599
Query: 269 RERIRQIESCAFRKLKNKRRTKHLQQYL 186
RERIRQIESCAFRKLKNK+RTK LQQY+
Sbjct: 600 RERIRQIESCAFRKLKNKKRTKFLQQYI 627
>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
rpoD1, putative [Ricinus communis]
Length = 569
Score = 694 bits (1792), Expect = 0.0
Identities = 378/588 (64%), Positives = 431/588 (73%), Gaps = 8/588 (1%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKT---HHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXT 1749
MSCLLPQFKC PD+FSIH + H TQ K+REP+Y+R QCI
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58
Query: 1748 VLDMEKLKLPYLEAHSNPVTANRPWTY--IGATGPPXXXXXXXXXXXXXXXXXXXXXXXX 1575
VLD+EKL+LP EA S+ + N PWTY G+T
Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTYATFGST-----------LATETLITSDEAVIAA 107
Query: 1574 XXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSDSK---PTTILSEADPFQFETDELAEIAR 1404
++V S +++SK P+TI + P + E R
Sbjct: 108 AAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASRWP------QFTETER 161
Query: 1403 VGVVGESKEAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXX 1224
++G+S ET E S+Q +KE+D LE TH+ELELLQ QLS+ IAVRS RQT
Sbjct: 162 ARIIGDSVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKA 221
Query: 1223 XXXXXXXXXXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLS 1044
+S+VSVKPGSTS++KR SLQ++DYSDPLRYLRGTTS+SRLLTA+EE +LS
Sbjct: 222 RRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELS 281
Query: 1043 EGIQGLLKLEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIR 864
IQ LLKLE+LQ+EL ER GGQPT AQWAAAAGVDQRTLR R+NHG CKDKMIKSNIR
Sbjct: 282 AAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIR 341
Query: 863 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 684
LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 342 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 401
Query: 683 QSRTIRLPFHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPR 504
QSRTIRLPFHMVEATYRVKEARKQ SENGRHP++EEVAEA GLSMKRL+AVLLTPKAPR
Sbjct: 402 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPR 461
Query: 503 SLDQKIGFNQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGM 324
SLDQKIG N +LKPSEV ADPEAET+EELL+KQFMKQDL+KVL+TLNPRE QV+RWRFG+
Sbjct: 462 SLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGL 521
Query: 323 EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
EDGRMKTLQEIGE+MGVSRERIRQIES AFRKLKNK+RTK L+QYL++
Sbjct: 522 EDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB [Solanum lycopersicum]
Length = 613
Score = 694 bits (1792), Expect = 0.0
Identities = 381/615 (61%), Positives = 430/615 (69%), Gaps = 37/615 (6%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXTVLD 1740
MS LLPQF LPD+F I KT Q T QL K+R+ ++ RTQCI TVL
Sbjct: 1 MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLG 60
Query: 1739 MEKLKLPYLEAHSNPVTA----------------------------------NRPWTYIG 1662
+EKL+LP +E SN V A +RPWTY G
Sbjct: 61 IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTG 120
Query: 1661 ATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKS 1482
A GPP +V NN S
Sbjct: 121 AVGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVM----LVGYNNLKDS 176
Query: 1481 DSKPTTILSEADPFQFETDELA---EIARVGVVGESKEAETEFLENYSLQYPLKEADDLE 1311
D+ LSEA FE+ LA E VGV E +E ++ + + L ++DDLE
Sbjct: 177 DNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLE 236
Query: 1310 PTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASIVSVKPGSTSRRKRASLQD 1131
P+HEELE+LQ+QLS IAV+SNRQT A++VSVK GSTSR+KRAS+QD
Sbjct: 237 PSHEELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQD 296
Query: 1130 IDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQDELVERCGGQPTIAQWAA 951
+DYSDPLRYLRGTT SSRLLTA+EE +LS GIQ LLKLE+LQ EL ERCGGQPT QWAA
Sbjct: 297 VDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAA 356
Query: 950 AAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 771
AAGVDQ TLR RLN+GI CKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGA
Sbjct: 357 AAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA 416
Query: 770 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFQSENGR 591
EKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ +ENGR
Sbjct: 417 EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGR 476
Query: 590 HPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLKPSEVTADPEAETSEELLI 411
HPN+ EVAEATGLSMKRL AV+LTPKAPRSLDQK+GFN++LKPSEV ADP+AETSEE+L
Sbjct: 477 HPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILT 536
Query: 410 KQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFR 231
KQFM+QDL+KVLDTLNPRE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFR
Sbjct: 537 KQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 596
Query: 230 KLKNKRRTKHLQQYL 186
KLKNK+RTK LQQY+
Sbjct: 597 KLKNKKRTKFLQQYI 611
>gb|AKC88655.1| sigma factor [Francoa sonchifolia]
Length = 562
Score = 693 bits (1789), Expect = 0.0
Identities = 374/580 (64%), Positives = 430/580 (74%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXTVLD 1740
M+CLLPQF P++F IH T + L +NR+ +YFR QCI VLD
Sbjct: 1 MACLLPQFNRPPETFFIHSYTI--PLSLLPRNRQTLYFRAQCILSTTSPPTPT----VLD 54
Query: 1739 MEKLKLPYLEAHSNPVTANRPWTYIGATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1560
MEKL++P NRPWTYI + PP
Sbjct: 55 MEKLRMP----------VNRPWTYIPSIAPPTGPNIETTIASENLLTSNDALIAAAAAEV 104
Query: 1559 XXXXXXXXXXXXXXXVMVSQNNSTKSDSKPTTILSEADPFQFETDELAEIARVGVVGESK 1380
+MV+ NS + KP + S+ D + +L + R+G++GES
Sbjct: 105 VALARAAVKVANDAVLMVNSYNSANVEIKPQ-VSSKFDTLWSKV-QLTQAERIGIIGESI 162
Query: 1379 EAETEFLENYSLQYPLKEADDLEPTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXX 1200
A+T E S++ + E+D LE THE+LELLQ QLSK+IAVRS RQ
Sbjct: 163 GAKTGVGEVCSMENVITESDVLEQTHEKLELLQEQLSKTIAVRSRRQIERKARRGRAAEK 222
Query: 1199 XXASIVSVKPGSTSRRKRASLQDIDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLK 1020
A++VSVK GST+R+KR S+QD+DYSDPLRYLRGTTS+SRLLT+TEEH+LS GIQ LLK
Sbjct: 223 AAANVVSVKSGSTNRKKRGSIQDVDYSDPLRYLRGTTSTSRLLTSTEEHELSAGIQDLLK 282
Query: 1019 LEKLQDELVERCGGQPTIAQWAAAAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKN 840
LE+L++ELVERCG QPT AQWAAAA VD +TLR RLN+GI CKDKMIKSNIRLVISIAKN
Sbjct: 283 LERLEEELVERCGCQPTFAQWAAAARVDNKTLRRRLNYGIVCKDKMIKSNIRLVISIAKN 342
Query: 839 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 660
YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 343 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 402
Query: 659 FHMVEATYRVKEARKQFQSENGRHPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGF 480
FHMVEATYRVKEARKQ SENGRHPNNEEVA+ATGLSMKRLTAVLLTPKAPRSLDQKIG
Sbjct: 403 FHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLTAVLLTPKAPRSLDQKIGI 462
Query: 479 NQNLKPSEVTADPEAETSEELLIKQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTL 300
NQNLKPSE+ ADPEAET+E++L+KQFMK+DL KVL++LNPRE+QV+RWRFG+EDGRMKTL
Sbjct: 463 NQNLKPSEIIADPEAETTEDILMKQFMKEDLDKVLNSLNPREKQVVRWRFGLEDGRMKTL 522
Query: 299 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLMS 180
QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQY++S
Sbjct: 523 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYVVS 562
>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
Length = 613
Score = 690 bits (1780), Expect = 0.0
Identities = 380/615 (61%), Positives = 428/615 (69%), Gaps = 37/615 (6%)
Frame = -2
Query: 1919 MSCLLPQFKCLPDSFSIHVKTHHQATTQLQKNREPVYFRTQCIXXXXXXXXXXXXXTVLD 1740
MS LLPQF LPD+F I KT Q T QL K+R+ ++ RTQCI TVL
Sbjct: 1 MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLG 60
Query: 1739 MEKLKLPYLEAHSNPVTA----------------------------------NRPWTYIG 1662
+EKL+LP +E SN V A +RPWTY G
Sbjct: 61 IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTG 120
Query: 1661 ATGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKS 1482
A GPP +V NN S
Sbjct: 121 AVGPPAEANTKPENSLASEEAIVAAAAAEAVALAKAALKGAQDAVM----LVGYNNLNDS 176
Query: 1481 DSKPTTILSEADPFQFETDELA---EIARVGVVGESKEAETEFLENYSLQYPLKEADDLE 1311
D+ LSEA FE+ LA E RVGV E +E ++ + + L ++DDLE
Sbjct: 177 DNVGRGTLSEARTAPFESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDLE 236
Query: 1310 PTHEELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASIVSVKPGSTSRRKRASLQD 1131
P+ EELE+LQ+QLS IAV+SNRQT A++V+VK GSTSR+KRAS+QD
Sbjct: 237 PSPEELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQD 296
Query: 1130 IDYSDPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQDELVERCGGQPTIAQWAA 951
+DYSDPLRYLRGTT SSRLLTA+EE +LS GIQ LLKLE+LQ EL ERCGGQPT QWAA
Sbjct: 297 VDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAA 356
Query: 950 AAGVDQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 771
AAGVDQ TLR RLN+GI CKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGA
Sbjct: 357 AAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA 416
Query: 770 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFQSENGR 591
EKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQ +ENGR
Sbjct: 417 EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGR 476
Query: 590 HPNNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLKPSEVTADPEAETSEELLI 411
HPN+ EVAEA GLSMKRL AV+LTPKAPRSLDQKIGFN++LKPSEV ADPEAETSEE+L
Sbjct: 477 HPNDAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILT 536
Query: 410 KQFMKQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFR 231
KQFM+QDL+KVLDTLNPRE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFR
Sbjct: 537 KQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 596
Query: 230 KLKNKRRTKHLQQYL 186
KLKNK+RTK LQQY+
Sbjct: 597 KLKNKKRTKFLQQYI 611
>ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Eucalyptus
grandis]
Length = 601
Score = 685 bits (1768), Expect = 0.0
Identities = 364/553 (65%), Positives = 411/553 (74%), Gaps = 2/553 (0%)
Frame = -2
Query: 1832 QKNREPVYFRTQCIXXXXXXXXXXXXXT--VLDMEKLKLPYLEAHSNPVTANRPWTYIGA 1659
+KNRE YFR QC+ T VLDMEKL+LP LE ++ T+NRPWTY GA
Sbjct: 50 EKNRETTYFRAQCLLSATSPSTLSSAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGA 109
Query: 1658 TGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMVSQNNSTKSD 1479
GPP +M+ +S+ D
Sbjct: 110 VGPPAEVNLGATLATETLLTSDEAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSNID 169
Query: 1478 SKPTTILSEADPFQFETDELAEIARVGVVGESKEAETEFLENYSLQYPLKEADDLEPTHE 1299
+K + S + EL E+ ++ E E E E +QY +++DLEPTHE
Sbjct: 170 NK-LELSSRTSTSLSKHAELLELEHSNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHE 228
Query: 1298 ELELLQAQLSKSIAVRSNRQTXXXXXXXXXXXXXXASIVSVKPGSTSRRKRASLQDIDYS 1119
EL+LLQ QL KSIAVRS RQT A++VSVK GS S++KRA+LQ++DYS
Sbjct: 229 ELQLLQVQLFKSIAVRSRRQTERKEIRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYS 288
Query: 1118 DPLRYLRGTTSSSRLLTATEEHDLSEGIQGLLKLEKLQDELVERCGGQPTIAQWAAAAGV 939
DPLRYLRGTTSSSRLLTATEE +LSEGIQ LLKLE+LQ EL ERCGG+P AQWAAAAGV
Sbjct: 289 DPLRYLRGTTSSSRLLTATEETELSEGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGV 348
Query: 938 DQRTLRTRLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 759
DQ+TLR RLN+G CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFD
Sbjct: 349 DQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFD 408
Query: 758 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFQSENGRHPNN 579
ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ SENGR P+N
Sbjct: 409 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDN 468
Query: 578 EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGFNQNLKPSEVTADPEAETSEELLIKQFM 399
EEVAEATGLSMKRL AVL+TPKAPRSLDQKIG NQNLKPSEV ADP AETSE++L+KQFM
Sbjct: 469 EEVAEATGLSMKRLNAVLMTPKAPRSLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFM 528
Query: 398 KQDLQKVLDTLNPRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 219
+QDL+KVLDTLNPRE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN
Sbjct: 529 RQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 588
Query: 218 KRRTKHLQQYLMS 180
K+RTKHLQQY+++
Sbjct: 589 KKRTKHLQQYVLA 601