BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00006431
         (2683 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein...   724   0.0  
ref|XP_009799534.1| PREDICTED: RNA polymerase-associated protein...   721   0.0  
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   721   0.0  
ref|XP_009623037.1| PREDICTED: RNA polymerase-associated protein...   719   0.0  
ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein...   719   0.0  
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   716   0.0  
emb|CDO99584.1| unnamed protein product [Coffea canephora]            708   0.0  
ref|XP_011027887.1| PREDICTED: RNA polymerase-associated protein...   702   0.0  
ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like ...   701   0.0  
ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   700   0.0  
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   700   0.0  
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   700   0.0  
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   699   0.0  
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   699   0.0  
ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein...   698   0.0  
ref|XP_011047833.1| PREDICTED: RNA polymerase-associated protein...   697   0.0  
ref|XP_011047832.1| PREDICTED: RNA polymerase-associated protein...   697   0.0  
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   697   0.0  
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   696   0.0  
ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein...   694   0.0  

>ref|XP_010646904.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Vitis
            vinifera]
          Length = 658

 Score =  724 bits (1870), Expect = 0.0
 Identities = 412/667 (61%), Positives = 451/667 (67%), Gaps = 2/667 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                         RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRREGSYSDDGSDSKDDDSDEDRGYSSRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKLAQM 2072
            GSQVPLKKRLDPT                         D+D VGSDLYK+++DRQ+LAQ+
Sbjct: 61   GSQVPLKKRLDPTERDDDHGSPEEGDDDGSDHEGDSSDDSD-VGSDLYKNEDDRQQLAQL 119

Query: 2071 SELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXXX 1892
            +EL+REMIL +R+TKK DKKL + L+ K      ++TQ RK SP   LSRGV        
Sbjct: 120  TELEREMILTDRATKKTDKKLHEKLRSK---RGKEKTQSRKESPPLQLSRGVRSSARSAD 176

Query: 1891 XXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXXX 1712
                   ALNELRAKRLK QD EAHRK RDA          SPVKRR F  A        
Sbjct: 177  RAAAKDDALNELRAKRLKHQDPEAHRKLRDASRGGSSNRGFSPVKRRAFTAASLSSSSQS 236

Query: 1711 XXXXXXXXXXXXXXXG--MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDE 1538
                              MVDSDDD+    SDVPTFE+IK ITIRRSKLAK FMEPFF+E
Sbjct: 237  ESDGGSRSEDEGSTGDGAMVDSDDDR-GIGSDVPTFEDIKSITIRRSKLAKWFMEPFFEE 295

Query: 1537 LIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAAR 1358
            LIVGCFVRVGIGKSRSGPIYRLCMVRNVDA+DPDR Y+L+NKTT+KYLN VWGNE+S+AR
Sbjct: 296  LIVGCFVRVGIGKSRSGPIYRLCMVRNVDASDPDRHYQLENKTTYKYLNCVWGNENSSAR 355

Query: 1357 WQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQML 1178
            WQMAMVSDS PL EEF QWV+EVERSG RM +KQD+LEKREAIQKTN FVYSAAT KQML
Sbjct: 356  WQMAMVSDSGPLMEEFNQWVKEVERSGSRMLTKQDILEKREAIQKTNMFVYSAATGKQML 415

Query: 1177 QEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAI 998
            QEKKS + RPLN+ AEKDRLRREMEVA SKHD+ EVERI  RLQ+LEASR+++EKD KAI
Sbjct: 416  QEKKSVSSRPLNIVAEKDRLRREMEVALSKHDQAEVERINTRLQQLEASRRSKEKDAKAI 475

Query: 997  RLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDD 818
            RL+EMNR+NR ENFKNASE K VN  LKAGEAGYDPFSRRWTRSRNYYVSKP G    D+
Sbjct: 476  RLAEMNRKNRAENFKNASESKRVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGG---GDE 532

Query: 817  TMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTES 638
                 NGE   A     SN                         GKLVDTSAPVDQGTES
Sbjct: 533  AAAVANGEAPAAFVGAGSN-GTGGKGAEVGVAATAAALEAAADAGKLVDTSAPVDQGTES 591

Query: 637  NMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 458
            N LHDF+LPISLA LQKFGGP+GA AGFMARKQRIEATVGC+VPENDGRRHALTLTV DY
Sbjct: 592  NTLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDY 651

Query: 457  KRRRGLL 437
            KRRRGLL
Sbjct: 652  KRRRGLL 658


>ref|XP_009799534.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nicotiana
            sylvestris]
          Length = 654

 Score =  721 bits (1860), Expect = 0.0
 Identities = 397/609 (65%), Positives = 448/609 (73%), Gaps = 1/609 (0%)
 Frame = -1

Query: 2260 KPSGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKL 2081
            K SGSQVPLKKRLDP                          D+DS+GSDLYKD+EDRQKL
Sbjct: 58   KLSGSQVPLKKRLDPPERDDDRSSHGEGDDDGDGYGDERDSDDDSIGSDLYKDEEDRQKL 117

Query: 2080 AQMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXX 1901
            AQMSEL REMIL +R++KK+D+ LQ+ +  K++     R+QPRK S   + SRG+     
Sbjct: 118  AQMSELDREMILTDRASKKSDRSLQEKISGKIKN----RSQPRKPSSPPSHSRGMRSSTR 173

Query: 1900 XXXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGF-AVAXXXX 1724
                      ALNE+RAKR +QQD E + K RDA          SPVKRR F A A    
Sbjct: 174  ALDRAADRDDALNEIRAKRARQQDPEGNWKLRDAGRKGSGGRGYSPVKRRSFTAAALGSS 233

Query: 1723 XXXXXXXXXXXXXXXXXXXGMVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFF 1544
                               GM DSDDDK SPES +PTFE+IK+ITIRRSKLAK FMEPFF
Sbjct: 234  PTRGESDSRSNEGDSSGDDGMDDSDDDK-SPESQLPTFEDIKEITIRRSKLAKWFMEPFF 292

Query: 1543 DELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSA 1364
            DELIVGCFVRVGIG+SRSGPIYRLC+VRNVDA DP+RQYKL+NKTT K+LN++WGN+SSA
Sbjct: 293  DELIVGCFVRVGIGRSRSGPIYRLCIVRNVDATDPNRQYKLENKTTFKFLNLIWGNDSSA 352

Query: 1363 ARWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQ 1184
            ARWQMAMVSDS PLR+EF+QWV+EVERSGGRMPSKQDVLEK+EAIQK+NTFVYSA TVKQ
Sbjct: 353  ARWQMAMVSDSPPLRDEFDQWVKEVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQ 412

Query: 1183 MLQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLK 1004
            MLQ+KKSATWRPLNVAAEKDRLRREMEVA+ K+DE EVERIKARLQELEASR+ QEKD K
Sbjct: 413  MLQQKKSATWRPLNVAAEKDRLRREMEVAKMKNDEAEVERIKARLQELEASRKAQEKDDK 472

Query: 1003 AIRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDT 824
            A RL+EMNR+NRVENFKNASEL+PVN  LKAGEAGYDPFSRRWTRS NY+    +     
Sbjct: 473  ARRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKSAN----- 527

Query: 823  DDTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGT 644
            +  + A NGE   ALAVVD+N                         GKLVDT APVD GT
Sbjct: 528  EAAVGASNGEAAAALAVVDNN--GAGGIADGGMAATAAALQAAAGAGKLVDTIAPVDLGT 585

Query: 643  ESNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVS 464
            ESN LHDFDLPISLA LQKFGGP+G+ AGF+ARKQRIEATVGC+VPENDGRRHALTL+VS
Sbjct: 586  ESNTLHDFDLPISLAVLQKFGGPQGSQAGFIARKQRIEATVGCRVPENDGRRHALTLSVS 645

Query: 463  DYKRRRGLL 437
            DYKRRRGLL
Sbjct: 646  DYKRRRGLL 654


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  721 bits (1860), Expect = 0.0
 Identities = 399/668 (59%), Positives = 454/668 (67%), Gaps = 3/668 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                         RKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLAQ 2075
            GSQVPLKKRLDP                           ++S VG DLYK+++DR+KLAQ
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 2074 MSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXX 1895
            M+EL+RE+IL+ER+ K+ DKK  + ++ K    ND+ ++ RK +P    SRGV       
Sbjct: 121  MTELERELILSERADKRGDKKFTEKIRSK--RENDRPSRSRKETPPLPSSRGVRSSARSA 178

Query: 1894 XXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXX 1715
                    ALNELRAKRLKQQD EAHRK RDA          SPVKR+ F  +       
Sbjct: 179  DRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQ 238

Query: 1714 XXXXXXXXXXXXXXXXG--MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFD 1541
                               MVDSDDD+     D PTF++IK+ITIRRSKLAK FMEPFF+
Sbjct: 239  SDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFE 298

Query: 1540 ELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAA 1361
            ELIVGC+VRVGIG+S+SGPIYRLCMVRNVDA +P+R YKL+NKTT+KYLNVVWGNESSAA
Sbjct: 299  ELIVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAA 358

Query: 1360 RWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQM 1181
            RWQMAM+SDS P  EEF Q +RE+ERSGGRMPSKQDVLEK+EA+QK  TFVYSAATVKQM
Sbjct: 359  RWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQM 418

Query: 1180 LQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKA 1001
            LQEKKS + RPLN+AAEKDRLRR++E+AQSKHDE EVERIK RLQ+LEASRQ QEKD KA
Sbjct: 419  LQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKA 478

Query: 1000 IRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTD 821
            +RL+EMNR+NR ENFKNASELKPVN GLKAGEAGYDPFSRRWTRSRNYYV+KP G     
Sbjct: 479  VRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGA---- 534

Query: 820  DTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTE 641
            D     NG+    +A    N                         GKLVDTSAPVD+GTE
Sbjct: 535  DAAAVANGDRIGVIA--SGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTE 592

Query: 640  SNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSD 461
            SNMLHDF++PISL ALQ+FGGP+GA AGFMARKQRIEATVGCQVPENDGRRHALTLTVSD
Sbjct: 593  SNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSD 652

Query: 460  YKRRRGLL 437
            YKRRRGLL
Sbjct: 653  YKRRRGLL 660


>ref|XP_009623037.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Nicotiana
            tomentosiformis]
          Length = 654

 Score =  719 bits (1856), Expect = 0.0
 Identities = 397/609 (65%), Positives = 447/609 (73%), Gaps = 1/609 (0%)
 Frame = -1

Query: 2260 KPSGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKL 2081
            K SGSQVPLKKRLDP                          D+DS+GSDLYKD+EDRQKL
Sbjct: 58   KLSGSQVPLKKRLDPPERDDDRSSHGEGDDDGDGYGDERDSDDDSIGSDLYKDEEDRQKL 117

Query: 2080 AQMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXX 1901
            AQM+EL REMIL +R++KK+D+ LQ+ +  K++     R+QPRK S   + SRG+     
Sbjct: 118  AQMTELDREMILTDRASKKSDRSLQEKISGKIKN----RSQPRKPSSPPSHSRGMRSSTR 173

Query: 1900 XXXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGF-AVAXXXX 1724
                      ALNE+RAKR +QQD E + K RDA          SPVKRR F A A    
Sbjct: 174  ALDRAADRDDALNEIRAKRARQQDPEGNWKLRDAGRKGSGGRGYSPVKRRSFTAAALGSS 233

Query: 1723 XXXXXXXXXXXXXXXXXXXGMVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFF 1544
                               GM DSDDDK SPES +PTFE+IK+ITIRRSKLAK FMEPFF
Sbjct: 234  PTRGESDSRSNEGDSSGDDGMDDSDDDK-SPESQLPTFEDIKEITIRRSKLAKWFMEPFF 292

Query: 1543 DELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSA 1364
            DELIVGCFVRVGIG+SRSGPIYRLC+VRNVDA DP+RQYKL+NKTT K+LN+VWGN+SSA
Sbjct: 293  DELIVGCFVRVGIGRSRSGPIYRLCIVRNVDATDPNRQYKLENKTTFKFLNLVWGNDSSA 352

Query: 1363 ARWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQ 1184
            ARWQMAMVSDS PLR+EF+QWV+EVERSGGRMPSKQDVLEK+EAIQK+NTFVYSA TVKQ
Sbjct: 353  ARWQMAMVSDSPPLRDEFDQWVKEVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQ 412

Query: 1183 MLQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLK 1004
            MLQ+KKSATWRPLNVAAEKDRLRREMEVA+ K+DE EVE+IKARLQELEASR+ QEKD K
Sbjct: 413  MLQQKKSATWRPLNVAAEKDRLRREMEVAKMKNDEAEVEKIKARLQELEASRKAQEKDDK 472

Query: 1003 AIRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDT 824
            A RL+EMNR+NRVENFKNASEL+PVN  LKAGEAGYDPFSRRWTRS NY+    +     
Sbjct: 473  ARRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKSAN----- 527

Query: 823  DDTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGT 644
            +    A NGE   ALAVVD+N                         GKLVDT APVD GT
Sbjct: 528  EAAEGASNGEAAAALAVVDNN--GAGGIADGGMEATAAALQAAAGAGKLVDTIAPVDLGT 585

Query: 643  ESNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVS 464
            ESN LHDFDLPISLA LQKFGGP+G+ AGFMARKQRIEATVGC+VPENDGRRHALTL+VS
Sbjct: 586  ESNTLHDFDLPISLAVLQKFGGPQGSQAGFMARKQRIEATVGCRVPENDGRRHALTLSVS 645

Query: 463  DYKRRRGLL 437
            DYKRRRGLL
Sbjct: 646  DYKRRRGLL 654


>ref|XP_012091565.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha
            curcas] gi|643703874|gb|KDP20938.1| hypothetical protein
            JCGZ_21409 [Jatropha curcas]
          Length = 658

 Score =  719 bits (1855), Expect = 0.0
 Identities = 403/667 (60%), Positives = 459/667 (68%), Gaps = 2/667 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                         RKPS
Sbjct: 1    MADLENLLLEAAGRTGSSGRNRNAHPPSRRRREGSYSDGGSDSRDEDSDDDRGYASRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLAQ 2075
            GSQVPLKKRLDP                           ++S VG DLYKD++DR+KLAQ
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGGYDDGASDREGDSSDESDVGDDLYKDEDDRRKLAQ 120

Query: 2074 MSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXX 1895
            MSEL+REMIL+ER+ KK DK L + ++ K    +++ T+ RK +P    SRGV       
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSK--RDSERATRSRKETPPLPSSRGVRTSARSA 178

Query: 1894 XXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXX 1715
                    ALNELRAKRLKQQD EAHRK RD           SPV+R+ F  A       
Sbjct: 179  DRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGTSGSRGVSPVRRKRFTSASLSSSSS 238

Query: 1714 XXXXXXXXXXXXXXXXG-MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDE 1538
                            G M DSD+D+  P S+  T+++I+++TIRRSKLAK  MEP+F+E
Sbjct: 239  ESDSRSHSEDEASTGDGGMADSDEDR-EPGSEGLTYDDIREVTIRRSKLAKWLMEPWFEE 297

Query: 1537 LIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAAR 1358
            LIVGCFVRVGIG+S+SGPIYRLC+VRNVDAADPDR YKL+NKTT+KYLNV+WGNESSAAR
Sbjct: 298  LIVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAAR 357

Query: 1357 WQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQML 1178
            WQMAMVSDSAP  +E++QWVREVERSGGRMP+KQD+LEK+EAI+K+NTFVYSAATVKQML
Sbjct: 358  WQMAMVSDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIKKSNTFVYSAATVKQML 417

Query: 1177 QEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAI 998
            QEKKSA+ RPLNVAAEKDRLRRE+EVAQ K D+ EVERI+AR+QELEASRQ QEKD KAI
Sbjct: 418  QEKKSASTRPLNVAAEKDRLRRELEVAQMKQDDAEVERIRARIQELEASRQAQEKDAKAI 477

Query: 997  RLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDD 818
            RL+EMNR+NR ENF+NASELKPVN  LKAGEAGYDPFSRRWTRSRNYYVSKP G D    
Sbjct: 478  RLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGAD---- 533

Query: 817  TMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTES 638
             + AE     TA AV  SN                         GKLVDT+APVDQGTES
Sbjct: 534  -VAAEANNNGTA-AVAHSNGAATGTLAEAGMAATAAALEAAADAGKLVDTAAPVDQGTES 591

Query: 637  NMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 458
            N LHDFDLPISL AL+KFGG KGA AGFMARKQ+IEATVGC+VPENDGRRHALTLTVSDY
Sbjct: 592  NTLHDFDLPISLTALEKFGGAKGAKAGFMARKQQIEATVGCRVPENDGRRHALTLTVSDY 651

Query: 457  KRRRGLL 437
            KRRRGLL
Sbjct: 652  KRRRGLL 658


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  716 bits (1847), Expect = 0.0
 Identities = 398/667 (59%), Positives = 458/667 (68%), Gaps = 2/667 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                         RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLAQ 2075
            GSQVPLKKRLDPT                          + S VG DLYK+++DR+KLAQ
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 2074 MSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXX 1895
            MSEL+REMIL+ER+ KK DK L + ++ K    +++ T+ RK +P    SRGV       
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSK--RESERTTRSRKETPPLPSSRGVRTSARSA 178

Query: 1894 XXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXX 1715
                    ALNEL+A+RLKQQD EAHRK RDA          SP+KR+ F  A       
Sbjct: 179  DRAAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSS 238

Query: 1714 XXXXXXXXXXXXXXXXG-MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDE 1538
                            G M DSDDD   P S  PTF++I++ITIRRSKLAK FMEP+F+E
Sbjct: 239  ESESRSHSEDEGSTGDGGMADSDDDG-EPGSQGPTFDDIREITIRRSKLAKWFMEPWFEE 297

Query: 1537 LIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAAR 1358
            LIVGCFVRVGIG+S+SGPIYRLC+VRNVDAADPDR YKL+NKTT+KYLNV+WGNESSAAR
Sbjct: 298  LIVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAAR 357

Query: 1357 WQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQML 1178
            WQMAM+SDSAP  +E++QWVREVERSGGRMP+KQD+LEK+EAI+K+NTFVYSAATVKQML
Sbjct: 358  WQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQML 417

Query: 1177 QEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAI 998
            QEKKSA+ RPLNVAAEKDRLRRE+EVAQSK D+ EVERI+AR+QELEASRQTQ KD KAI
Sbjct: 418  QEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAI 477

Query: 997  RLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDD 818
            RL+EMNR+NR ENF+NASELKPVN  LKAGEAGYDPFSRRWTRSRNYYVSKP+G     D
Sbjct: 478  RLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAG----GD 533

Query: 817  TMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTES 638
               A N E +  +AV +                           GKLVDT+APVDQGTES
Sbjct: 534  AAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTES 593

Query: 637  NMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 458
            N LH+F+LPISL ALQKFGG +GA AGFMARKQRIEAT+GC+V END +RH LTLTVSDY
Sbjct: 594  NTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDY 653

Query: 457  KRRRGLL 437
            KRRRGLL
Sbjct: 654  KRRRGLL 660


>emb|CDO99584.1| unnamed protein product [Coffea canephora]
          Length = 631

 Score =  708 bits (1827), Expect = 0.0
 Identities = 390/608 (64%), Positives = 434/608 (71%)
 Frame = -1

Query: 2260 KPSGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKL 2081
            KPSGSQVPLKKRLDP                           +DSVGSDLYKD++DR+KL
Sbjct: 52   KPSGSQVPLKKRLDPLERDEDDSNHEEDGYHEGDSD------DDSVGSDLYKDEDDRKKL 105

Query: 2080 AQMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXX 1901
            AQMSELQREMILA+R++ ++D+++ +   KK           RK SPT T SR V     
Sbjct: 106  AQMSELQREMILADRASTRSDREMHEKFAKK-----------RKGSPTQTHSRAVRSSTR 154

Query: 1900 XXXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXX 1721
                      ALNE+RAKR++QQD EAHRK RDA          SPVKRR F  A     
Sbjct: 155  FADRTAAKDDALNEIRAKRMRQQDPEAHRKLRDATRDGSGSRGYSPVKRRPFTAATIGSP 214

Query: 1720 XXXXXXXXXXXXXXXXXXGMVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFD 1541
                              GM DSD+DKTS ES  PT+E+IK+ITIRRSKLAK FMEPFF+
Sbjct: 215  TRSGSASHSDEEESTGDGGMADSDEDKTSAESKWPTYEDIKEITIRRSKLAKWFMEPFFE 274

Query: 1540 ELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAA 1361
            +LIVGCFVRVGIGK+R GPIYRLC+VRNVD +DPDR YKLDNKTT+KYLNVVWGNE+SAA
Sbjct: 275  DLIVGCFVRVGIGKNRYGPIYRLCVVRNVDGSDPDRLYKLDNKTTYKYLNVVWGNENSAA 334

Query: 1360 RWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQM 1181
            RWQMAM+SDS P +EE++QWVREVERSGGRMPSK +VLEK+EAIQKTN+FVYSA TVKQM
Sbjct: 335  RWQMAMISDSPPAKEEYDQWVREVERSGGRMPSKLEVLEKKEAIQKTNSFVYSAETVKQM 394

Query: 1180 LQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKA 1001
            LQEKKSATWRPLNVAAEKDRLR EMEVA+  +DE+EVERIKARLQELEASRQ  E D KA
Sbjct: 395  LQEKKSATWRPLNVAAEKDRLRTEMEVAKINNDELEVERIKARLQELEASRQAHEMDKKA 454

Query: 1000 IRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTD 821
            IRL+EMNR+NRVENFKNAS LKPVN  LKAGEAGYDPFSRRWTRSRNYYV  P      D
Sbjct: 455  IRLAEMNRKNRVENFKNASGLKPVNASLKAGEAGYDPFSRRWTRSRNYYVKNP-----ID 509

Query: 820  DTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTE 641
               TA +GE T A AV + N                         GKLVDTSAPVDQG E
Sbjct: 510  GEATAADGEATAASAVNNRN------GTAVVSTEMGKAATATADDGKLVDTSAPVDQGRE 563

Query: 640  SNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSD 461
            SNMLH F L I+L  L+ FGG KGA AGFMARKQRIEATVGC+VPENDGRRHALTLTVSD
Sbjct: 564  SNMLHGFKLEINLDPLENFGGAKGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVSD 623

Query: 460  YKRRRGLL 437
            YKRR GLL
Sbjct: 624  YKRRMGLL 631


>ref|XP_011027887.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Populus
            euphratica]
          Length = 662

 Score =  702 bits (1811), Expect = 0.0
 Identities = 391/668 (58%), Positives = 453/668 (67%), Gaps = 3/668 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-KP 2255
            MADLE LLLEAAGRT                                           KP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRAYANRKP 60

Query: 2254 SGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLA 2078
            SGSQVPLKKRL+                            ++S +G DLYKD++DR+KLA
Sbjct: 61   SGSQVPLKKRLETNERDEEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 2077 QMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXX 1898
            QMSEL RE+ILA+R+ KK DK L + +  +++  NDK T+ RK +P    +RGV      
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKI--RLKRDNDKPTRSRKETPPLPSTRGVRSSARS 178

Query: 1897 XXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXX 1718
                     ALNELRAKRLKQQD EAHRK RD           S VK+  F  A      
Sbjct: 179  ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSS 238

Query: 1717 XXXXXXXXXXXXXXXXXG-MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFD 1541
                             G M DSD+D   P S  PT+E+IK+ITIRR+KLAK FMEP+F+
Sbjct: 239  SESGSRSHSEDEGSTGDGGMADSDED-VEPGSQGPTYEDIKEITIRRTKLAKWFMEPWFE 297

Query: 1540 ELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAA 1361
            ELI+GCFVRVGIG+SRSGP+YRLCMVRNVDAA+PD+ YKL+NK+T+KYLNV WG ++SAA
Sbjct: 298  ELIIGCFVRVGIGRSRSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAA 357

Query: 1360 RWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQM 1181
            RWQMAMVSDS P  EE++QWVREVE  GGR+PSKQD+LEK+EAI+K+NTFVYSAATVKQM
Sbjct: 358  RWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQM 417

Query: 1180 LQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKA 1001
            LQEKKSA+ RPLNVAAEKDRLRRE+E+AQSKHDE EVERI AR++ELEASRQ + KD KA
Sbjct: 418  LQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRQAKVKDAKA 477

Query: 1000 IRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTD 821
            IRL+EMNR+NRVENF+NASE+KPVN GLKAGEAGYDPFSRRWTRSRNYYVSKP+  DD D
Sbjct: 478  IRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADDPD 537

Query: 820  DTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTE 641
             T  +E  E   A+AV  SN                         GKLVDTSAPVDQGTE
Sbjct: 538  ATKISEANE---AVAVAASNQVVAGVMSEAGVAATAAALEAAADAGKLVDTSAPVDQGTE 594

Query: 640  SNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSD 461
            SN +H F++ ISL ALQ+FGGP+GA AGFMARKQRIEATVGC+VPENDGRRHALTLTV D
Sbjct: 595  SNTMHSFEIEISLTALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGD 654

Query: 460  YKRRRGLL 437
            YKRRRGLL
Sbjct: 655  YKRRRGLL 662


>ref|XP_010100559.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
            gi|587894274|gb|EXB82802.1| RNA polymerase-associated
            protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  701 bits (1809), Expect = 0.0
 Identities = 390/667 (58%), Positives = 449/667 (67%), Gaps = 2/667 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MA+LE LLLEAAGRT                                         RKPS
Sbjct: 1    MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKLAQM 2072
            GSQVPLKKRLDPT                             VGSDLYKDD+DR+KLA+M
Sbjct: 61   GSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDS--ESDVGSDLYKDDDDRRKLAEM 118

Query: 2071 SELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXXX 1892
            +ELQREMIL +R++KK DK L++ L+ K  ++  K TQ RK +P    S  V        
Sbjct: 119  TELQREMILLDRASKKEDKNLKEKLRPKW-DNKGKATQSRKETPLP--SSRVRSSARSAD 175

Query: 1891 XXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXXX 1712
                   ALNELRAKRLKQQD EAH K RDA             KR+ +           
Sbjct: 176  RAAAKDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQS 235

Query: 1711 XXXXXXXXXXXXXXXG--MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDE 1538
                              M+DSDD++  P S+  TF++IK++T+RRSKLAK  MEPFF+E
Sbjct: 236  DSESESQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEE 295

Query: 1537 LIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAAR 1358
            LIVGCFVRVGIG+S+SGPIYRLCMVRNVDA++PDRQYKLDNK THKYLNVVWGNE+SAAR
Sbjct: 296  LIVGCFVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAAR 355

Query: 1357 WQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQML 1178
            WQMAMVSDS P  EEF+QWVREVERSGGRMP+K D+L+K+E+I+K NTFVYSAATVKQML
Sbjct: 356  WQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQML 415

Query: 1177 QEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAI 998
            QEKKSA+ RPLN+A EKDRLRRE+EVAQSK+DEVEV+RIK RLQELEASR+ ++ D KAI
Sbjct: 416  QEKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAI 475

Query: 997  RLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDD 818
            RL+EMNR+NRVENFKNASELKPVN GLKAGEAGYDPFSRRWTRSRNYYV KP    +   
Sbjct: 476  RLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKEDSG 535

Query: 817  TMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTES 638
                 NG +T A    ++N                         GKLVDT+APVDQGT S
Sbjct: 536  ANAGNNGASTDA----ENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVS 591

Query: 637  NMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 458
            NMLH+F+LPISL+ LQKFGGP+GA AGFMARKQRIEATVGC+VPENDGRRHALTL+V DY
Sbjct: 592  NMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDY 651

Query: 457  KRRRGLL 437
            KRRRGLL
Sbjct: 652  KRRRGLL 658


>ref|XP_008228301.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
            RTF1 homolog [Prunus mume]
          Length = 648

 Score =  700 bits (1806), Expect = 0.0
 Identities = 395/667 (59%), Positives = 458/667 (68%), Gaps = 2/667 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                          KPS
Sbjct: 1    MADLENLLLEAAGRTXXXXSRRRRGGSYSDGGSDSRGDDSDDGRGYASR--------KPS 52

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKLAQM 2072
            G+QVPLKKRLDPT                         +   VGSDLYKD++DR+KLA+M
Sbjct: 53   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 112

Query: 2071 SELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXXX 1892
            SELQRE+IL++R+ KK DK L++  + K  +   K T  RK +P    SR V        
Sbjct: 113  SELQRELILSDRAQKKDDKSLKEKFRPKWDK--GKTTHSRKETPPLPSSR-VRSSARSAD 169

Query: 1891 XXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXXX 1712
                   ALNELRAKRLKQQD EAHRK RDA          S + R+ F           
Sbjct: 170  RAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQS 229

Query: 1711 XXXXXXXXXXXXXXXG--MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDE 1538
                              M+DSDD++    S+  TF++IK+ITIRRSKLAK  MEPFF+E
Sbjct: 230  DSDSRSHSEDEGSTGEDAMMDSDDER----SEGLTFDDIKEITIRRSKLAKWLMEPFFEE 285

Query: 1537 LIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAAR 1358
            LIVGCFVRVGIG+S+SGPIYRLCMVRNVDA+DPDR+YKL+NKTTHKYLNVVWGNE+SAAR
Sbjct: 286  LIVGCFVRVGIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAAR 345

Query: 1357 WQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQML 1178
            WQMAM+SDSAP+ EEF+QWVREVERSGGR+PSKQDVLEK+EAI+K NTFVYSAATVKQM+
Sbjct: 346  WQMAMISDSAPVEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMI 405

Query: 1177 QEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAI 998
            +EKKSA+ RPLN+A EKDRLRRE+EVAQSKHD+ EV+RIK RLQ+LEA RQ+Q KD KA+
Sbjct: 406  EEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVDRIKTRLQQLEARRQSQGKDSKAV 465

Query: 997  RLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDD 818
            RL+EMNR+NRVENFKNASELKPV  GLKAGEAGYDPFSRRWTRSRNYYVSKP  +    +
Sbjct: 466  RLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAE 525

Query: 817  TMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTES 638
             +   +G    ALA ++SN                         GKL+DTSAPVD GTES
Sbjct: 526  AIVDADG----ALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTES 581

Query: 637  NMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 458
            N++H+F+LPISLA LQKFGGP+GA  GF+ARKQRIEATVGC+VPENDGRRHALTLTVSDY
Sbjct: 582  NLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDY 641

Query: 457  KRRRGLL 437
            KRRRGLL
Sbjct: 642  KRRRGLL 648


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  700 bits (1806), Expect = 0.0
 Identities = 391/670 (58%), Positives = 450/670 (67%), Gaps = 5/670 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-KP 2255
            MADLE LLLEAAGRT                                           KP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 2254 SGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLA 2078
            SGSQVPLKKRL+                            + S +G DLYKD++DRQKLA
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 2077 QMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXX 1898
            QMSEL RE+ILA+R+ KK DK L + ++ K    NDK T+ RK +P    SRGV      
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSK--RDNDKPTRSRKETPPLPSSRGVRSSARS 178

Query: 1897 XXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXX 1718
                     ALNELRAKRLKQQD EAHRK RDA          + VK+  F  A      
Sbjct: 179  ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSS 238

Query: 1717 XXXXXXXXXXXXXXXXXG---MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPF 1547
                             G   M DSD+D   P S  PT+E+IK+ITIRR+KLAK FMEP+
Sbjct: 239  SESESGSRSHSEDEGSTGDGGMADSDEDG-DPGSRGPTYEDIKEITIRRTKLAKWFMEPW 297

Query: 1546 FDELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESS 1367
            F+ELI+GCFVRVGIG+S++GP+YRLCMVRNVDAA+PD+ YKL+NK+T+KYLNV WG +SS
Sbjct: 298  FEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSS 357

Query: 1366 AARWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVK 1187
            AARWQMAMVSDSAP  EE++QWVRE ER GGR+PSKQD+LEK+EAI+K+NTFVYSAATVK
Sbjct: 358  AARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 417

Query: 1186 QMLQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDL 1007
            QMLQEKKSA+ RPLNVAAEKDRLRRE+E+AQS+HDE EVERI+AR+ ELEASRQ + KD 
Sbjct: 418  QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDA 477

Query: 1006 KAIRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDD 827
            KA+RL+EMNR+NRVENF+NASELKP+N GLKAGEAGYDPFSRRWTRSRNYYVS P+G   
Sbjct: 478  KALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAG--- 534

Query: 826  TDDTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQG 647
             DD + A N E     AV DS+                         GKLVDTSAPVDQG
Sbjct: 535  GDDAVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAGKLVDTSAPVDQG 594

Query: 646  TESNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTV 467
            TESN +H+F+L ISL ALQKF GP+GAHAGFMARKQRIEA VGCQV ENDGRRHALTLTV
Sbjct: 595  TESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTV 654

Query: 466  SDYKRRRGLL 437
             DYKRRRGLL
Sbjct: 655  GDYKRRRGLL 664


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            lycopersicum]
          Length = 645

 Score =  700 bits (1806), Expect = 0.0
 Identities = 387/610 (63%), Positives = 435/610 (71%), Gaps = 2/610 (0%)
 Frame = -1

Query: 2260 KPSGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKL 2081
            K SGSQVPLKKRLDP                           +DS+GSDLYKDD+DRQKL
Sbjct: 58   KLSGSQVPLKKRLDPQERDDDHSSHGEGNDGDGYGNESD---DDSIGSDLYKDDDDRQKL 114

Query: 2080 AQMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXX 1901
            AQM+EL+REMIL +R+ KK+D+ L   + K        R QPRK+S   + SRG+     
Sbjct: 115  AQMTELEREMILTDRAAKKSDRSLHDKMIKD-------RAQPRKQSSPPSHSRGMRSSTR 167

Query: 1900 XXXXXXXXXXALNELRAKRLKQQ-DLEAHRKQRDAXXXXXXXXXXSPVKRRGF-AVAXXX 1727
                      ALNE+RAKR +QQ D E   K RDA          SP+KRR F A +   
Sbjct: 168  ALDRAADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGS 227

Query: 1726 XXXXXXXXXXXXXXXXXXXXGMVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPF 1547
                                GM DSDDDK+SPES +PTFE+IK+I+IRRSKLAK FMEPF
Sbjct: 228  SPTRGESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPF 287

Query: 1546 FDELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESS 1367
            FDELIVGCFVRVGIG+SRSGPIYRLC+VRNVDA+DP+RQYKL+NKTT K+LNVVWGNE+S
Sbjct: 288  FDELIVGCFVRVGIGRSRSGPIYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENS 347

Query: 1366 AARWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVK 1187
            AARWQMAM+SDS PLR+EF+QWVREVERSGGRMPSKQDVLEK+EAIQK+NTFVYSA TVK
Sbjct: 348  AARWQMAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVK 407

Query: 1186 QMLQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDL 1007
            QMLQ+KKSATWRPLNVAAEKDRLRR+MEVA+ K+DE EVERIKARLQELE SR+ QEKD 
Sbjct: 408  QMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDD 467

Query: 1006 KAIRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDD 827
            KA RL+EMNR+NRVENFKNASEL+PVN  LKAGEAGYDPFSRRWTRS NY+         
Sbjct: 468  KARRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAK------- 520

Query: 826  TDDTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQG 647
                  A NGE   A A+   +                         GKLVDT+APVDQG
Sbjct: 521  -----GASNGEAAAAAALAAEDNNGAGGTADGGMAATAAALQAAAGAGKLVDTNAPVDQG 575

Query: 646  TESNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTV 467
            TESN LHDFDLPISLA LQKFGG +G  AGFMARKQRIEATVGC VPENDGRRHALTL+V
Sbjct: 576  TESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSV 635

Query: 466  SDYKRRRGLL 437
            SDYKRRRGLL
Sbjct: 636  SDYKRRRGLL 645


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  699 bits (1805), Expect = 0.0
 Identities = 385/610 (63%), Positives = 436/610 (71%), Gaps = 2/610 (0%)
 Frame = -1

Query: 2260 KPSGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKL 2081
            K SGSQVPLKKRLDP                           +DS+GSDLYKDD+DRQKL
Sbjct: 58   KLSGSQVPLKKRLDPQERDDDHSSHGEGNDGDGYGNESD---DDSIGSDLYKDDDDRQKL 114

Query: 2080 AQMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXX 1901
            AQM+EL+REMIL +R+ KK+D+ L   + K        R QPRK+S   + SRG+     
Sbjct: 115  AQMTELEREMILTDRAAKKSDRSLHDKMIKD-------RAQPRKQSSPPSHSRGMRSSTR 167

Query: 1900 XXXXXXXXXXALNELRAKRLKQQ-DLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXX 1724
                      ALNE+RAKR +QQ D E   K RDA          SP+KRR F  A    
Sbjct: 168  ALDRAADRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGGRGYSPIKRRSFTAATLGS 227

Query: 1723 XXXXXXXXXXXXXXXXXXXG-MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPF 1547
                                 M DSDDDK+SPES +PTFE+IK+I+IRRSKLAK FMEPF
Sbjct: 228  SPTRGESDSHSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPF 287

Query: 1546 FDELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESS 1367
            FDELIVGCFVRVGIG+SRSGPIYRLC+VRNVD++DP+RQYKL+NKTT K+LNVVWGNE+S
Sbjct: 288  FDELIVGCFVRVGIGRSRSGPIYRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNENS 347

Query: 1366 AARWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVK 1187
            AARWQMAMVSDS PLR+EF+QWVREVERSGGRMPSKQDVLEK+EAIQK+NTFVYSA TVK
Sbjct: 348  AARWQMAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVK 407

Query: 1186 QMLQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDL 1007
            QMLQ+KKSATWRPLNVAAEKDRLRR+MEVA+ K+DE EVERIKARLQEL+ SR+ QEKD 
Sbjct: 408  QMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELDDSRKVQEKDD 467

Query: 1006 KAIRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDD 827
            KA RL+EMNR+NRVENFKNASEL+PVN  LKAG+AGYDPFSRRWTRS NY+    + E +
Sbjct: 468  KARRLAEMNRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTRSTNYFAKGANEEAE 527

Query: 826  TDDTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQG 647
                  A NGE   A A+   +                         GKLVDT+APVDQG
Sbjct: 528  -----GASNGEVAAAAALAAEDNNGASGTADGGMAATAAALQAAAGAGKLVDTNAPVDQG 582

Query: 646  TESNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTV 467
            TESN LHDFDLPISLA LQKFGG +G  AGFMARKQRIEATVGC VPENDGRRHALTL+V
Sbjct: 583  TESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSV 642

Query: 466  SDYKRRRGLL 437
            SDYKRRRGLL
Sbjct: 643  SDYKRRRGLL 652


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  699 bits (1804), Expect = 0.0
 Identities = 389/667 (58%), Positives = 450/667 (67%), Gaps = 2/667 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                         RKPS
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKLAQM 2072
            G+QVPLKKRLDPT                         +   VGSDLYKD++DR+KLA+M
Sbjct: 61   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 120

Query: 2071 SELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXXX 1892
            SELQRE+IL++R+ KK DK L++  + K      K T P   S   + +R          
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPK------KETPPLPSSRVRSSARSADRAAAKDD 174

Query: 1891 XXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXXX 1712
                    LNELRAKRLKQQD EAHRK RDA          S + R+ F           
Sbjct: 175  A-------LNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQS 227

Query: 1711 XXXXXXXXXXXXXXXG--MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDE 1538
                              M+DSDD++    S+  TF++IK+ITIRRSKLAK  MEPFF+E
Sbjct: 228  DSDSRSHSEDDGSTGEDPMMDSDDER----SEGLTFDDIKEITIRRSKLAKWLMEPFFEE 283

Query: 1537 LIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAAR 1358
            LIVGCFVRVGIG+S+SGPIYRLCMVRNVDA+DPDR+YKL+NKTTHKYLNVVWGNE+SAAR
Sbjct: 284  LIVGCFVRVGIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAAR 343

Query: 1357 WQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQML 1178
            WQMAM+SDSAPL EEF+QWVREVERSGGR+PSKQDVLEK+EAI+K NTFVYSAATVKQM+
Sbjct: 344  WQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMI 403

Query: 1177 QEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAI 998
            +EKKSA+ RPLN+A EKDRLRRE+EVAQSKHD+ EVERIK RLQ+LEA RQ+Q KD KA+
Sbjct: 404  EEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAV 463

Query: 997  RLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDD 818
            RL+EMNR+NRVENFKNASELKPV  GLKAGEAGYDPFSRRWTRSRNYYVSKP  +    +
Sbjct: 464  RLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAE 523

Query: 817  TMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTES 638
             +   +G    ALA ++SN                         GKL+DTSAPVD GTES
Sbjct: 524  AIVDADG----ALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTES 579

Query: 637  NMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 458
            N++H+F+LPISLA LQKFGGP+GA  GF+ARKQRIEATVGC+VPENDGRRHALTLTVSDY
Sbjct: 580  NLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDY 639

Query: 457  KRRRGLL 437
            KRR GLL
Sbjct: 640  KRRMGLL 646


>ref|XP_012455370.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Gossypium
            raimondii] gi|763802543|gb|KJB69481.1| hypothetical
            protein B456_011G025800 [Gossypium raimondii]
            gi|763802544|gb|KJB69482.1| hypothetical protein
            B456_011G025800 [Gossypium raimondii]
            gi|763802545|gb|KJB69483.1| hypothetical protein
            B456_011G025800 [Gossypium raimondii]
          Length = 660

 Score =  698 bits (1801), Expect = 0.0
 Identities = 393/668 (58%), Positives = 454/668 (67%), Gaps = 3/668 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                         RKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLAQ 2075
            GSQVPLKKRLDP                           ++S VG DLYK++EDR++LAQ
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYNDAGSGRERDSSDESDVGDDLYKNEEDRRQLAQ 120

Query: 2074 MSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXX 1895
            ++EL+REMIL+ER+ K+ DKK  + ++ K    ND+ ++ ++ +P    SRGV       
Sbjct: 121  LTELEREMILSERADKRGDKKFTEKIRSK--RENDRPSRSQRETPPLP-SRGVRSSARSA 177

Query: 1894 XXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXX 1715
                    ALNELRAKRLKQQD EAHRK RDA          SPVKR+ F  +       
Sbjct: 178  DRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGNRGLSPVKRKPFTASSLSSSSQ 237

Query: 1714 XXXXXXXXXXXXXXXXG--MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFD 1541
                               MVDS+D++ +   + PTF +IK+ITIRRSKLAK  MEPFF+
Sbjct: 238  SESESRSNSEDEGSTGDGGMVDSEDERGTWGPNGPTFNDIKEITIRRSKLAKWLMEPFFE 297

Query: 1540 ELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAA 1361
            ELIVGCFVRVGIG+S++G IYRLCMVRNVDA DPDR YKL+NKTT+KYLNVVWGNESSAA
Sbjct: 298  ELIVGCFVRVGIGRSKTGAIYRLCMVRNVDATDPDRTYKLENKTTYKYLNVVWGNESSAA 357

Query: 1360 RWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQM 1181
            RWQMAM+SDS PL EEF Q +REVERSGGRMPSKQDVLEK+EA+QK  TFVYSAATVKQM
Sbjct: 358  RWQMAMISDSPPLEEEFRQLIREVERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQM 417

Query: 1180 LQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKA 1001
            LQEKKS++ RPLNVAAEKDRLRR++E+AQSKHD+VEVERIK RLQ+LEASRQ+QEKD KA
Sbjct: 418  LQEKKSSSSRPLNVAAEKDRLRRDLEIAQSKHDDVEVERIKKRLQQLEASRQSQEKDAKA 477

Query: 1000 IRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTD 821
            +RL+EMNR+NRVENFKNAS LKPVN GLKAGEAGYDPFSRRWTRSRNYY +K  G     
Sbjct: 478  VRLAEMNRKNRVENFKNASGLKPVNTGLKAGEAGYDPFSRRWTRSRNYYNAKAPG----G 533

Query: 820  DTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTE 641
            D     NG+T  A+   + N                         GKLVDT+APVD+GTE
Sbjct: 534  DAAAVANGDTNGAIGSGNGN-DAGAAAAEAGRAATAAALQEAAGAGKLVDTNAPVDEGTE 592

Query: 640  SNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSD 461
            SNMLHDF+LPISL  L+KFGG +GA AGFMARKQRIEATVGC+VPENDGRRHALTLTVSD
Sbjct: 593  SNMLHDFELPISLDVLRKFGGHEGAVAGFMARKQRIEATVGCRVPENDGRRHALTLTVSD 652

Query: 460  YKRRRGLL 437
            YKRRRGLL
Sbjct: 653  YKRRRGLL 660


>ref|XP_011047833.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X2
            [Populus euphratica] gi|743908750|ref|XP_011047834.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Populus euphratica]
            gi|743908752|ref|XP_011047836.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog isoform X2
            [Populus euphratica]
          Length = 666

 Score =  697 bits (1798), Expect = 0.0
 Identities = 392/670 (58%), Positives = 447/670 (66%), Gaps = 5/670 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-KP 2255
            MADLE LLLEAAGRT                                           KP
Sbjct: 3    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 62

Query: 2254 SGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLA 2078
            SGSQVPLKKRL+                            + S +G DLYKD++DRQKLA
Sbjct: 63   SGSQVPLKKRLETNERDDEGGGQEEGDYDDGGSYREGESSDASDIGDDLYKDEDDRQKLA 122

Query: 2077 QMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXX 1898
            QMSEL RE+ILA+R+ KK DK L + ++ K    NDK T+ RK +P     RGV      
Sbjct: 123  QMSELDRELILADRADKKGDKHLTEKIRSK--RDNDKPTRSRKETPPLPSLRGVRSSARS 180

Query: 1897 XXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXX 1718
                     ALNELRAKRLKQQD EAHRK RDA          + VK+  F  A      
Sbjct: 181  ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSS 240

Query: 1717 XXXXXXXXXXXXXXXXXG---MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPF 1547
                             G   M DSD+D   P S  PT+E+IK+ITIRR+KLAK FMEP+
Sbjct: 241  SESESGSRSHSEDEGSTGDGGMADSDEDG-DPGSQGPTYEDIKEITIRRTKLAKWFMEPW 299

Query: 1546 FDELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESS 1367
            F+ELI+GCFVRVGIG+S++GP+YRLCMVRNVDAA+PD+ YKL+NK+T KYLNV WG +SS
Sbjct: 300  FEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTFKYLNVTWGADSS 359

Query: 1366 AARWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVK 1187
            AARWQMAMVSDSAP  EE++QWVRE ER GGR+PSKQD+LEK+EAI+K+NTFVYSAATVK
Sbjct: 360  AARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 419

Query: 1186 QMLQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDL 1007
            QMLQEKKSA+ RPLNVAAEKDRLRRE+E+AQSKHDE EVERI+AR+ ELEASRQ + KD 
Sbjct: 420  QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERIEARILELEASRQAKVKDA 479

Query: 1006 KAIRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDD 827
            KAIRL+EMNR+NRVENF+NASELKP+N GLKAGEAGYDPFSRRWTRSRNYYVS P+G   
Sbjct: 480  KAIRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAG--- 536

Query: 826  TDDTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQG 647
              D   A N E     AV DS+                         GKLVDTSAPVDQG
Sbjct: 537  GADAAAASNSEANDTAAVADSHHVVAGAMSVSGVAATAAALDAAADAGKLVDTSAPVDQG 596

Query: 646  TESNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTV 467
            TESN +H+F+L ISL ALQKF GP+GAHAGFMARKQRIEATVGCQV ENDGRRHALTLTV
Sbjct: 597  TESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEATVGCQVRENDGRRHALTLTV 656

Query: 466  SDYKRRRGLL 437
             DYKRRRGLL
Sbjct: 657  GDYKRRRGLL 666


>ref|XP_011047832.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Populus euphratica]
          Length = 695

 Score =  697 bits (1798), Expect = 0.0
 Identities = 392/670 (58%), Positives = 447/670 (66%), Gaps = 5/670 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-KP 2255
            MADLE LLLEAAGRT                                           KP
Sbjct: 32   MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 91

Query: 2254 SGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLA 2078
            SGSQVPLKKRL+                            + S +G DLYKD++DRQKLA
Sbjct: 92   SGSQVPLKKRLETNERDDEGGGQEEGDYDDGGSYREGESSDASDIGDDLYKDEDDRQKLA 151

Query: 2077 QMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXX 1898
            QMSEL RE+ILA+R+ KK DK L + ++ K    NDK T+ RK +P     RGV      
Sbjct: 152  QMSELDRELILADRADKKGDKHLTEKIRSK--RDNDKPTRSRKETPPLPSLRGVRSSARS 209

Query: 1897 XXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXX 1718
                     ALNELRAKRLKQQD EAHRK RDA          + VK+  F  A      
Sbjct: 210  ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSS 269

Query: 1717 XXXXXXXXXXXXXXXXXG---MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPF 1547
                             G   M DSD+D   P S  PT+E+IK+ITIRR+KLAK FMEP+
Sbjct: 270  SESESGSRSHSEDEGSTGDGGMADSDEDG-DPGSQGPTYEDIKEITIRRTKLAKWFMEPW 328

Query: 1546 FDELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESS 1367
            F+ELI+GCFVRVGIG+S++GP+YRLCMVRNVDAA+PD+ YKL+NK+T KYLNV WG +SS
Sbjct: 329  FEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTFKYLNVTWGADSS 388

Query: 1366 AARWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVK 1187
            AARWQMAMVSDSAP  EE++QWVRE ER GGR+PSKQD+LEK+EAI+K+NTFVYSAATVK
Sbjct: 389  AARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 448

Query: 1186 QMLQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDL 1007
            QMLQEKKSA+ RPLNVAAEKDRLRRE+E+AQSKHDE EVERI+AR+ ELEASRQ + KD 
Sbjct: 449  QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERIEARILELEASRQAKVKDA 508

Query: 1006 KAIRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDD 827
            KAIRL+EMNR+NRVENF+NASELKP+N GLKAGEAGYDPFSRRWTRSRNYYVS P+G   
Sbjct: 509  KAIRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAG--- 565

Query: 826  TDDTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQG 647
              D   A N E     AV DS+                         GKLVDTSAPVDQG
Sbjct: 566  GADAAAASNSEANDTAAVADSHHVVAGAMSVSGVAATAAALDAAADAGKLVDTSAPVDQG 625

Query: 646  TESNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTV 467
            TESN +H+F+L ISL ALQKF GP+GAHAGFMARKQRIEATVGCQV ENDGRRHALTLTV
Sbjct: 626  TESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEATVGCQVRENDGRRHALTLTV 685

Query: 466  SDYKRRRGLL 437
             DYKRRRGLL
Sbjct: 686  GDYKRRRGLL 695


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  697 bits (1798), Expect = 0.0
 Identities = 390/668 (58%), Positives = 451/668 (67%), Gaps = 3/668 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-KP 2255
            MADLE LLLEAAGRT                                           KP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKP 60

Query: 2254 SGSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDS-VGSDLYKDDEDRQKLA 2078
            SGSQVPLKKRL+                            ++S +G DLYKD++DR+KLA
Sbjct: 61   SGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 2077 QMSELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXX 1898
            QMSEL RE+ILA+R+ KK DK L + +  +++  NDK T+ RK +P    SRGV      
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKI--RLKRDNDKPTRSRKETPPLPSSRGVRSSARS 178

Query: 1897 XXXXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXX 1718
                     ALNELRAKRLKQQD EAHRK RD           S VK+  F  A      
Sbjct: 179  ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSS 238

Query: 1717 XXXXXXXXXXXXXXXXXG-MVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFD 1541
                             G M DSD+D   P S  PT+E+IK+ITIRR+KLAK FMEP+F+
Sbjct: 239  SESGSRSHSEDEGSTGDGGMADSDED-VEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFE 297

Query: 1540 ELIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAA 1361
            ELI+GCFVRVGIG+S+SGP+YRLCMVRNVDAA+PD+ YKL+NK+T+KYLNV WG ++SAA
Sbjct: 298  ELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAA 357

Query: 1360 RWQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQM 1181
            RWQMAMVSDS P  EE++QWVREVE  GGR+PSKQD+LEK+EAI+K+NTFVYSAATVKQM
Sbjct: 358  RWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQM 417

Query: 1180 LQEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKA 1001
            LQEKKSA+ RPLNVAAEKDRLRRE+E+AQSKHDE EVERI AR++ELEASR  + KD KA
Sbjct: 418  LQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDAKA 477

Query: 1000 IRLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTD 821
            IRL+EMNR+NRVENF+NASE+KPVN GLKAGEAGYDPFSRRWTRSRNYYVSKP+  DD  
Sbjct: 478  IRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADDPV 537

Query: 820  DTMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTE 641
             T  +E  ET   +AV  SN                         GKLVDTSAPVDQGTE
Sbjct: 538  ATKISEANET---VAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTE 594

Query: 640  SNMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSD 461
            SN +H F+L ISL ALQ+FGGP+GA AGFMARKQRIEATVGC+VPENDGRRHALTLTV D
Sbjct: 595  SNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGD 654

Query: 460  YKRRRGLL 437
            YKRRRGLL
Sbjct: 655  YKRRRGLL 662


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max] gi|947101511|gb|KRH50003.1| hypothetical
            protein GLYMA_07G194200 [Glycine max]
          Length = 656

 Score =  696 bits (1795), Expect = 0.0
 Identities = 392/667 (58%), Positives = 450/667 (67%), Gaps = 2/667 (0%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLE LLLEAAGRT                                         RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKLAQM 2072
            GSQVPLKKRLDPT                         D  ++G DLYKD++DR+KL++M
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 2071 SELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXXX 1892
            +ELQREMIL++R+TKK DK L   +  K      K   PRK+SP  + SR          
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASK--REKGKVAVPRKQSPPMSSSR--MRASARSA 176

Query: 1891 XXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVA--XXXXXX 1718
                   ALNELRAKRLKQQD EAHR+ R+A           P KR+ F           
Sbjct: 177  DRSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPP-KRKPFTSTSLSSSSHS 235

Query: 1717 XXXXXXXXXXXXXXXXXGMVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDE 1538
                             G+VDSDDD+    S+ P+F+++K+ITIRRSKLAK FMEPFF+E
Sbjct: 236  ESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEE 295

Query: 1537 LIVGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAAR 1358
            LIVGCFVRVGIG+S++GPIYRLCMV+NVDA++PDRQYKL+NKTT+KYLNVVWGNESSAAR
Sbjct: 296  LIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAAR 355

Query: 1357 WQMAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQML 1178
            WQMAMVSDSAPL EEF+QWV+EV+RSGGRMPSKQDVLEK++AIQK  TFVYSAATVKQML
Sbjct: 356  WQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQML 415

Query: 1177 QEKKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAI 998
            QEKKSA+ RPLNVAAEKDRLRRE+E+AQSK+DE EVERIK RL ELEASRQ ++KD KA+
Sbjct: 416  QEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKAL 475

Query: 997  RLSEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDD 818
            +L+EMNR+NR ENFKNASE+KPVN GLKAGEAGYDPFSRRWTRSRNYY +KP       +
Sbjct: 476  KLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPG------E 529

Query: 817  TMTAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTES 638
               A N      +A   SN                         GKLVDTSAPVDQGTES
Sbjct: 530  KAAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTES 589

Query: 637  NMLHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 458
            NMLH+F+LPISLA LQKFGG +GA AGFMARKQ+IEATVG +V ENDGRRHALTLTVSDY
Sbjct: 590  NMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDY 649

Query: 457  KRRRGLL 437
            KRRRGLL
Sbjct: 650  KRRRGLL 656


>ref|XP_011096256.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Sesamum
            indicum]
          Length = 627

 Score =  694 bits (1792), Expect = 0.0
 Identities = 393/665 (59%), Positives = 449/665 (67%)
 Frame = -1

Query: 2431 MADLEKLLLEAAGRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPS 2252
            MADLEKLLLEAAGRT                                         RKPS
Sbjct: 1    MADLEKLLLEAAGRTTASGRNRHSSPPSRRRRKGSYSDDGSDSKNDDSDGDRAYPNRKPS 60

Query: 2251 GSQVPLKKRLDPTXXXXXXXXXXXXXXXXXXXXXXXXXDNDSVGSDLYKDDEDRQKLAQM 2072
            GSQVPLKKRLDP                           NDSVGSDLYKD++DR+KL+++
Sbjct: 61   GSQVPLKKRLDPADRDDDRSSQEGDEDDDYDHERDSD--NDSVGSDLYKDEDDREKLSKL 118

Query: 2071 SELQREMILAERSTKKADKKLQKNLQKKMREHNDKRTQPRKRSPTHTLSRGVXXXXXXXX 1892
            +EL+REMIL  R+TK++D+ L + L+K+       + Q RK SP    +R          
Sbjct: 119  TELEREMILEARATKRSDRDLTEKLKKR-------KGQDRKGSPPKAHTRN--------- 162

Query: 1891 XXXXXXXALNELRAKRLKQQDLEAHRKQRDAXXXXXXXXXXSPVKRRGFAVAXXXXXXXX 1712
                       +R+K  +   L+   K+R            SPVKRR F  A        
Sbjct: 163  -----------MRSKAERAGALDELVKRRRDAAKGGSGSRYSPVKRRSFTAATLSSPSRS 211

Query: 1711 XXXXXXXXXXXXXXXGMVDSDDDKTSPESDVPTFEEIKDITIRRSKLAKLFMEPFFDELI 1532
                            M DSDDDKTS ES VPT+E+I++ITIRRSKLAK FMEPFFDELI
Sbjct: 212  ESGSHSDGESTGDGG-MADSDDDKTS-ESKVPTYEDIREITIRRSKLAKWFMEPFFDELI 269

Query: 1531 VGCFVRVGIGKSRSGPIYRLCMVRNVDAADPDRQYKLDNKTTHKYLNVVWGNESSAARWQ 1352
            VGCFVRVGIGKSRSGPIYRLC+VRNVDA DPD+QYKLDNKTT+KYLNVVWGNE+SAARWQ
Sbjct: 270  VGCFVRVGIGKSRSGPIYRLCVVRNVDATDPDKQYKLDNKTTYKYLNVVWGNETSAARWQ 329

Query: 1351 MAMVSDSAPLREEFEQWVREVERSGGRMPSKQDVLEKREAIQKTNTFVYSAATVKQMLQE 1172
            MAM+SDS P +EEF+QWVREVERSGG MP+KQ+VLEK+EAIQKTN+FVYSAATVKQMLQE
Sbjct: 330  MAMISDSPPTKEEFDQWVREVERSGGHMPTKQEVLEKKEAIQKTNSFVYSAATVKQMLQE 389

Query: 1171 KKSATWRPLNVAAEKDRLRREMEVAQSKHDEVEVERIKARLQELEASRQTQEKDLKAIRL 992
            KKSATWRPLNVAAEKDRLRR +EVA+   DE EVER+KARLQELEASRQ QEKD KA++L
Sbjct: 390  KKSATWRPLNVAAEKDRLRRALEVAKENEDEAEVERLKARLQELEASRQPQEKDSKAVKL 449

Query: 991  SEMNRRNRVENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYVSKPSGEDDTDDTM 812
            +EMNRRNRVENF+NASELKPVN  LKAGEAGYDPFSRRWTRSRNYYV+  +G +   +T 
Sbjct: 450  AEMNRRNRVENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVANSNGGEAAGET- 508

Query: 811  TAENGETTTALAVVDSNXXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPVDQGTESNM 632
               NG+ + AL     +                         GKLVDTSAPVDQGTESNM
Sbjct: 509  ---NGDASAALP---GSNGGGRVSAEAGVAATAAALEAAAGAGKLVDTSAPVDQGTESNM 562

Query: 631  LHDFDLPISLAALQKFGGPKGAHAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYKR 452
            LH+F+LPISLAALQKFGGP+GA AGFMARKQRIEAT+G +VPENDGRRHALTLTVSDYKR
Sbjct: 563  LHNFELPISLAALQKFGGPQGAQAGFMARKQRIEATLGVKVPENDGRRHALTLTVSDYKR 622

Query: 451  RRGLL 437
            RRGLL
Sbjct: 623  RRGLL 627