BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00006384
         (3225 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010660413.1| PREDICTED: chloroplastic group IIA intron sp...   955   0.0  
ref|XP_010660411.1| PREDICTED: chloroplastic group IIA intron sp...   953   0.0  
ref|XP_011099540.1| PREDICTED: chloroplastic group IIA intron sp...   823   0.0  
ref|XP_011099539.1| PREDICTED: chloroplastic group IIA intron sp...   823   0.0  
ref|XP_012078016.1| PREDICTED: chloroplastic group IIA intron sp...   820   0.0  
ref|XP_007217313.1| hypothetical protein PRUPE_ppa016241mg [Prun...   813   0.0  
ref|XP_006482225.1| PREDICTED: chloroplastic group IIA intron sp...   809   0.0  
ref|XP_009357796.1| PREDICTED: chloroplastic group IIA intron sp...   808   0.0  
ref|XP_009357794.1| PREDICTED: chloroplastic group IIA intron sp...   808   0.0  
emb|CDP02762.1| unnamed protein product [Coffea canephora]            808   0.0  
ref|XP_009787271.1| PREDICTED: chloroplastic group IIA intron sp...   807   0.0  
ref|XP_010108863.1| Chloroplastic group IIA intron splicing faci...   806   0.0  
ref|XP_009787273.1| PREDICTED: chloroplastic group IIA intron sp...   806   0.0  
ref|XP_009598916.1| PREDICTED: chloroplastic group IIA intron sp...   803   0.0  
gb|KHG25518.1| hypothetical protein F383_03195 [Gossypium arboreum]   803   0.0  
ref|XP_009598920.1| PREDICTED: chloroplastic group IIA intron sp...   801   0.0  
ref|XP_012491296.1| PREDICTED: chloroplastic group IIA intron sp...   799   0.0  
ref|XP_007033220.1| maize chloroplast splicing factor CRS1, puta...   799   0.0  
ref|XP_007033219.1| maize chloroplast splicing factor CRS1, puta...   799   0.0  
ref|XP_007033218.1| maize chloroplast splicing factor CRS1, puta...   799   0.0  

>ref|XP_010660413.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Vitis vinifera]
          Length = 789

 Score =  955 bits (2469), Expect = 0.0
 Identities = 490/670 (73%), Positives = 553/670 (82%), Gaps = 13/670 (1%)
 Frame = -2

Query: 3203 SGGDGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEFEFGVPLEQFL 3024
            S G  KP+ SLTEK+SGGRG KAM+KI+QSI KLQETH+S+ET++  +EFEFGV LE   
Sbjct: 106  SAGAEKPDRSLTEKVSGGRGAKAMKKIMQSIVKLQETHTSDETQENTEEFEFGVSLEGIG 165

Query: 3023 GDGDSRIGGKMPWSKDERMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKK 2844
            GD +SRIGGKMPW K E++VFRRTKKEKVVTAAEL+LD +LLERLR EA +MRKWV VKK
Sbjct: 166  GDENSRIGGKMPWLKTEKVVFRRTKKEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKK 225

Query: 2843 AGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYR 2664
            AGVT+SVVDQIH +WK++ELAM+KFDMPLCRN+ RAREI+EIKT GLV+W +KD LVVYR
Sbjct: 226  AGVTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYR 285

Query: 2663 GGNYQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGH 2484
            G NYQ T K   +M P    G  A +        ED+++ S++K + S   E+M  KDG 
Sbjct: 286  GSNYQSTSKHFQKMRPGLVAGADASNSKLNQSNFEDDLTISEIKFHESTTGEKMGRKDGE 345

Query: 2483 EKNIP-------------INGSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLP 2343
            E + P             +NGSL+EREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLP
Sbjct: 346  EDSSPTGIFMEEMVDSQPVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLP 405

Query: 2342 GFRPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHI 2163
            GFRPPFRL P   RSKLTDDELTYLRKLA  LPTHFVLGRNRKLQGLAAAILKLWEK  I
Sbjct: 406  GFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLI 465

Query: 2162 AKIAVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREME 1983
             KIA+KWG  NT NEQMA ELKCLTGGVLLLRNKFFIILYRGKDFLP +VAN++ EREME
Sbjct: 466  VKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGKDFLPCRVANLIVEREME 525

Query: 1982 LKRCQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLE 1803
             K CQ++EE  RLKAIET + TD+   NT T GTLSEFQ+I +E   LK+ N E E++LE
Sbjct: 526  FKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELE 585

Query: 1802 AEKERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRK 1623
            AEKERL KEL+ QER L ILK KIERSAK L KLNSAWRP++ +AD+EMITEEERECFRK
Sbjct: 586  AEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADHDADKEMITEEERECFRK 645

Query: 1622 IGLKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGI 1443
            IG KMDSSL+LGRRGVFDGVIEGLHQHWKHREIVKVITMQR  SQV+YTAK+LE+ESGG+
Sbjct: 646  IGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGV 705

Query: 1442 LVSVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQ 1263
            LVS+ K+KEGHAIIIYRGKNYRRP K VP+NLLTKREALNRSLEMQRIGSLKFFA+QRQQ
Sbjct: 706  LVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQ 765

Query: 1262 AISDLKLKLF 1233
            AISDLKLKLF
Sbjct: 766  AISDLKLKLF 775


>ref|XP_010660411.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Vitis vinifera]
            gi|731417745|ref|XP_010660412.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X1 [Vitis vinifera]
          Length = 828

 Score =  953 bits (2463), Expect = 0.0
 Identities = 489/669 (73%), Positives = 552/669 (82%), Gaps = 13/669 (1%)
 Frame = -2

Query: 3203 SGGDGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEFEFGVPLEQFL 3024
            S G  KP+ SLTEK+SGGRG KAM+KI+QSI KLQETH+S+ET++  +EFEFGV LE   
Sbjct: 106  SAGAEKPDRSLTEKVSGGRGAKAMKKIMQSIVKLQETHTSDETQENTEEFEFGVSLEGIG 165

Query: 3023 GDGDSRIGGKMPWSKDERMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKK 2844
            GD +SRIGGKMPW K E++VFRRTKKEKVVTAAEL+LD +LLERLR EA +MRKWV VKK
Sbjct: 166  GDENSRIGGKMPWLKTEKVVFRRTKKEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKK 225

Query: 2843 AGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYR 2664
            AGVT+SVVDQIH +WK++ELAM+KFDMPLCRN+ RAREI+EIKT GLV+W +KD LVVYR
Sbjct: 226  AGVTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYR 285

Query: 2663 GGNYQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGH 2484
            G NYQ T K   +M P    G  A +        ED+++ S++K + S   E+M  KDG 
Sbjct: 286  GSNYQSTSKHFQKMRPGLVAGADASNSKLNQSNFEDDLTISEIKFHESTTGEKMGRKDGE 345

Query: 2483 EKNIP-------------INGSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLP 2343
            E + P             +NGSL+EREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLP
Sbjct: 346  EDSSPTGIFMEEMVDSQPVNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLP 405

Query: 2342 GFRPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHI 2163
            GFRPPFRL P   RSKLTDDELTYLRKLA  LPTHFVLGRNRKLQGLAAAILKLWEK  I
Sbjct: 406  GFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLI 465

Query: 2162 AKIAVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREME 1983
             KIA+KWG  NT NEQMA ELKCLTGGVLLLRNKFFIILYRGKDFLP +VAN++ EREME
Sbjct: 466  VKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGKDFLPCRVANLIVEREME 525

Query: 1982 LKRCQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLE 1803
             K CQ++EE  RLKAIET + TD+   NT T GTLSEFQ+I +E   LK+ N E E++LE
Sbjct: 526  FKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELE 585

Query: 1802 AEKERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRK 1623
            AEKERL KEL+ QER L ILK KIERSAK L KLNSAWRP++ +AD+EMITEEERECFRK
Sbjct: 586  AEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADHDADKEMITEEERECFRK 645

Query: 1622 IGLKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGI 1443
            IG KMDSSL+LGRRGVFDGVIEGLHQHWKHREIVKVITMQR  SQV+YTAK+LE+ESGG+
Sbjct: 646  IGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGV 705

Query: 1442 LVSVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQ 1263
            LVS+ K+KEGHAIIIYRGKNYRRP K VP+NLLTKREALNRSLEMQRIGSLKFFA+QRQQ
Sbjct: 706  LVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQ 765

Query: 1262 AISDLKLKL 1236
            AISDLKLKL
Sbjct: 766  AISDLKLKL 774


>ref|XP_011099540.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Sesamum indicum]
            gi|747102739|ref|XP_011099541.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X2 [Sesamum indicum]
          Length = 805

 Score =  823 bits (2126), Expect = 0.0
 Identities = 438/698 (62%), Positives = 525/698 (75%), Gaps = 35/698 (5%)
 Frame = -2

Query: 3224 RRRTNSPSG-GDGK--PEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEF 3054
            + RTN  S  G+ +  P+  LT K+ GGRGK AM+KI + IEKLQE  + EETR      
Sbjct: 105  KSRTNRDSTFGENRKHPDVDLTGKVGGGRGKVAMKKIFKGIEKLQENQNLEETRNDPKNL 164

Query: 3053 EFGVPLEQFLGDGDSRIGGK--------------------------------MPWSKDER 2970
            +F        GDGD   G +                                MPW + E+
Sbjct: 165  KFRFAPGALWGDGDCENGSEVEEKSEAAQESWESNGFDIPLPEVEKEVKLKEMPWQRHEK 224

Query: 2969 MVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNN 2790
            MV R  KKEKVV A EL LD +LLERLR EA  +RKWV VKKAGVTQ+VVDQ+HF+W+NN
Sbjct: 225  MVIRMVKKEKVVRADELGLDEMLLERLRGEAATIRKWVKVKKAGVTQAVVDQVHFVWRNN 284

Query: 2789 ELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWS 2610
            ELA+LKFD+PLCRN+HRAREIVE+KTGG+VVW  KD L VYRG NY+   K     +  S
Sbjct: 285  ELALLKFDLPLCRNMHRAREIVEMKTGGVVVWSNKDFLAVYRGCNYKSGSKNFWNKHGKS 344

Query: 2609 AGGQKAYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKNIPINGSLFEREADRL 2430
            AG ++ +S     H  ++  + ++V  +GS ++E +  KDG  +++ +  SL+EREADRL
Sbjct: 345  AGDEENFS-STMNH--QNTTTVARVSPDGSALDEMIHEKDGEWESLHMP-SLYEREADRL 400

Query: 2429 LDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRKLARP 2250
            LDGLGPRF+DWW  KPLPVDADLLPE++PGF+ PFRLCP   RSKLTD ELTYLRKLARP
Sbjct: 401  LDGLGPRFVDWWMQKPLPVDADLLPELVPGFKTPFRLCPPFTRSKLTDAELTYLRKLARP 460

Query: 2249 LPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGGVLLL 2070
            LPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIA+KWG  NT+NEQMA ELK LTGGVLLL
Sbjct: 461  LPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIALKWGIPNTDNEQMANELKNLTGGVLLL 520

Query: 2069 RNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASVNTGT 1890
            RNK+ IILYRGKDF+P +VA  VAEREMEL RCQL+EE  RLKA E F  +DE SVN+G 
Sbjct: 521  RNKYLIILYRGKDFVPSEVAEAVAEREMELTRCQLREETARLKASEAFSISDEDSVNSGI 580

Query: 1889 AGTLSEFQDIRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERSAKEL 1710
             GTLSEFQ I SE G+ K    E E++LEAE+ERL KEL+ QERKL ILK KIE+SAK L
Sbjct: 581  VGTLSEFQHIHSEIGNHKKRETEIEVQLEAERERLEKELKEQERKLYILKKKIEKSAKRL 640

Query: 1709 LKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQHWKHR 1530
             KL +A R SEQ+ D E+I++EER+C R++GLK+DSSLVLGRRGV+DGVIEG+HQHWKHR
Sbjct: 641  EKLKNASRFSEQDPDVEVISKEERQCLREMGLKIDSSLVLGRRGVYDGVIEGIHQHWKHR 700

Query: 1529 EIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKSVPQN 1350
            EIVKVITMQ+ L QV++TAK LEAESGGILV+V+K+KEGHAII+YRGKNY+R PKS  QN
Sbjct: 701  EIVKVITMQKKLLQVLHTAKCLEAESGGILVNVIKLKEGHAIILYRGKNYKR-PKSAAQN 759

Query: 1349 LLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKLKL 1236
            LL+K+EAL+RSLE+QR+GSLKFFA+QR+QAI DLK +L
Sbjct: 760  LLSKKEALSRSLEIQRLGSLKFFANQREQAICDLKSEL 797


>ref|XP_011099539.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Sesamum indicum]
          Length = 806

 Score =  823 bits (2126), Expect = 0.0
 Identities = 438/698 (62%), Positives = 525/698 (75%), Gaps = 35/698 (5%)
 Frame = -2

Query: 3224 RRRTNSPSG-GDGK--PEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEF 3054
            + RTN  S  G+ +  P+  LT K+ GGRGK AM+KI + IEKLQE  + EETR      
Sbjct: 105  KSRTNRDSTFGENRKHPDVDLTGKVGGGRGKVAMKKIFKGIEKLQENQNLEETRNDPKNL 164

Query: 3053 EFGVPLEQFLGDGDSRIGGK--------------------------------MPWSKDER 2970
            +F        GDGD   G +                                MPW + E+
Sbjct: 165  KFRFAPGALWGDGDCENGSEVEEKSEAAQESWESNGFDIPLPEVEKEVKLKEMPWQRHEK 224

Query: 2969 MVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNN 2790
            MV R  KKEKVV A EL LD +LLERLR EA  +RKWV VKKAGVTQ+VVDQ+HF+W+NN
Sbjct: 225  MVIRMVKKEKVVRADELGLDEMLLERLRGEAATIRKWVKVKKAGVTQAVVDQVHFVWRNN 284

Query: 2789 ELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWS 2610
            ELA+LKFD+PLCRN+HRAREIVE+KTGG+VVW  KD L VYRG NY+   K     +  S
Sbjct: 285  ELALLKFDLPLCRNMHRAREIVEMKTGGVVVWSNKDFLAVYRGCNYKSGSKNFWNKHGKS 344

Query: 2609 AGGQKAYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKNIPINGSLFEREADRL 2430
            AG ++ +S     H  ++  + ++V  +GS ++E +  KDG  +++ +  SL+EREADRL
Sbjct: 345  AGDEENFS-STMNH--QNTTTVARVSPDGSALDEMIHEKDGEWESLHMP-SLYEREADRL 400

Query: 2429 LDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRKLARP 2250
            LDGLGPRF+DWW  KPLPVDADLLPE++PGF+ PFRLCP   RSKLTD ELTYLRKLARP
Sbjct: 401  LDGLGPRFVDWWMQKPLPVDADLLPELVPGFKTPFRLCPPFTRSKLTDAELTYLRKLARP 460

Query: 2249 LPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGGVLLL 2070
            LPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIA+KWG  NT+NEQMA ELK LTGGVLLL
Sbjct: 461  LPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIALKWGIPNTDNEQMANELKNLTGGVLLL 520

Query: 2069 RNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASVNTGT 1890
            RNK+ IILYRGKDF+P +VA  VAEREMEL RCQL+EE  RLKA E F  +DE SVN+G 
Sbjct: 521  RNKYLIILYRGKDFVPSEVAEAVAEREMELTRCQLREETARLKASEAFSISDEDSVNSGI 580

Query: 1889 AGTLSEFQDIRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERSAKEL 1710
             GTLSEFQ I SE G+ K    E E++LEAE+ERL KEL+ QERKL ILK KIE+SAK L
Sbjct: 581  VGTLSEFQHIHSEIGNHKKRETEIEVQLEAERERLEKELKEQERKLYILKKKIEKSAKRL 640

Query: 1709 LKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQHWKHR 1530
             KL +A R SEQ+ D E+I++EER+C R++GLK+DSSLVLGRRGV+DGVIEG+HQHWKHR
Sbjct: 641  EKLKNASRFSEQDPDVEVISKEERQCLREMGLKIDSSLVLGRRGVYDGVIEGIHQHWKHR 700

Query: 1529 EIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKSVPQN 1350
            EIVKVITMQ+ L QV++TAK LEAESGGILV+V+K+KEGHAII+YRGKNY+R PKS  QN
Sbjct: 701  EIVKVITMQKKLLQVLHTAKCLEAESGGILVNVIKLKEGHAIILYRGKNYKR-PKSAAQN 759

Query: 1349 LLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKLKL 1236
            LL+K+EAL+RSLE+QR+GSLKFFA+QR+QAI DLK +L
Sbjct: 760  LLSKKEALSRSLEIQRLGSLKFFANQREQAICDLKSEL 797


>ref|XP_012078016.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Jatropha curcas]
          Length = 742

 Score =  820 bits (2119), Expect = 0.0
 Identities = 441/688 (64%), Positives = 522/688 (75%), Gaps = 4/688 (0%)
 Frame = -2

Query: 3224 RRRTNSPSGGDGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEFEFG 3045
            R++ +S +    K + +LT K SG RG KAM KIV+SI+KLQ+   S   +   D FE G
Sbjct: 84   RKKNSSKNANIEKSDKALTAKESGVRGNKAMAKIVKSIDKLQQNQDSVNAQVNFDGFEIG 143

Query: 3044 VPLEQFLGDGDSRIGGK-MPWSKDERMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRM 2868
              L Q  GD  +R+  K +PW +++R+++ R KKEKVVT AELSLD  LLERLR EA RM
Sbjct: 144  DGLVQIGGDEKARVDKKFLPWVREDRVLYWRMKKEKVVTKAELSLDKELLERLRCEAARM 203

Query: 2867 RKWVMVKKAGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCR 2688
            R WV VKKAGVT+ VV++I   WK NELAM+KFD+PLCRN+ RAREI+E+KTGGLVVW +
Sbjct: 204  RNWVKVKKAGVTERVVNEIRNSWKRNELAMVKFDLPLCRNMDRAREIIEMKTGGLVVWSK 263

Query: 2687 KDILVVYRGGNYQLT---HKACPEMYPWSAGGQKAYSLDDRCHILEDNISSSQVKTNGSV 2517
            KD L +YRG N+ LT   + +C +    S G +            ED+IS+S      + 
Sbjct: 264  KDFLAIYRGHNHHLTKTSYISCMDSKICSKGEE------------EDSISTSIFMEEDAN 311

Query: 2516 VNEQMSGKDGHEKNIPINGSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGF 2337
            ++             PINGSLFERE DRLLDGLGPRF+DWW  KPLPVDADLLP V+PGF
Sbjct: 312  LS-------------PINGSLFERETDRLLDGLGPRFVDWWMRKPLPVDADLLPAVVPGF 358

Query: 2336 RPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAK 2157
            +PP RLCP + R+KL DDELTYLRKLA  LPTHFVLGRNR LQGLAAAILKLWEK  IAK
Sbjct: 359  KPPSRLCPSYGRAKLKDDELTYLRKLAHALPTHFVLGRNRGLQGLAAAILKLWEKSLIAK 418

Query: 2156 IAVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREMELK 1977
            IAVKWG  N NNEQMA ELK LTGGVLLLRNKFFIILYRGKDFLP +VAN++A+RE+ELK
Sbjct: 419  IAVKWGIQNANNEQMANELKILTGGVLLLRNKFFIILYRGKDFLPCQVANLIADREIELK 478

Query: 1976 RCQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLEAE 1797
            RC L EE  RLKAIE+FY+ DE SVNT   GTL+EFQDI+++ G+L  E  E ++KLEA+
Sbjct: 479  RCHLNEEGARLKAIESFYSADELSVNTSKIGTLNEFQDIQAKFGELAKEYMESKIKLEAK 538

Query: 1796 KERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRKIG 1617
            KE+L KELRNQE KL IL+ KIE+SA+EL KL SA   ++Q+ D EM+TEEERECFRKIG
Sbjct: 539  KEKLEKELRNQEHKLYILQRKIEKSARELSKLRSASAAADQDVDLEMMTEEERECFRKIG 598

Query: 1616 LKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGILV 1437
            LKM SSLVLGRRGVFDGV+EGLHQHWKHRE+VKVITMQR+ SQVI TAK LEAESGGILV
Sbjct: 599  LKMHSSLVLGRRGVFDGVMEGLHQHWKHREVVKVITMQRIFSQVIRTAKFLEAESGGILV 658

Query: 1436 SVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAI 1257
            SV K+KEGHAIIIYRGKNY+RPPK +  NL TK EAL RSLEMQRIGSLKFFAHQRQ AI
Sbjct: 659  SVDKLKEGHAIIIYRGKNYKRPPKLL-NNLPTKIEALRRSLEMQRIGSLKFFAHQRQCAI 717

Query: 1256 SDLKLKLFADRVTEDQGS*IKENLRNSQ 1173
             +LK KL   ++ E +G    ++++NSQ
Sbjct: 718  RELKFKL--AKLQESEG----KDMKNSQ 739


>ref|XP_007217313.1| hypothetical protein PRUPE_ppa016241mg [Prunus persica]
            gi|462413463|gb|EMJ18512.1| hypothetical protein
            PRUPE_ppa016241mg [Prunus persica]
          Length = 809

 Score =  813 bits (2099), Expect = 0.0
 Identities = 443/689 (64%), Positives = 517/689 (75%), Gaps = 38/689 (5%)
 Frame = -2

Query: 3188 KPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEF--------------- 3054
            KP+  L  K+ G RG KA+++IVQSIE+L     ++ET+K   EF               
Sbjct: 123  KPDTVLAGKLVGIRGDKAIKQIVQSIERLGPNQKTDETQKGFGEFRIWDSLEGLGQNEKW 182

Query: 3053 --------EFGVP--LEQFLGDGDSRIGGKMPWSKDERMVFRRTKKEKVVTAAELSLDGV 2904
                    EFG+   LE      DSR GGKMPW +DER+VF+R KK++V +AAELSL+  
Sbjct: 183  DETHKDFVEFGIGGCLEGLGKAADSRFGGKMPWERDERIVFQRIKKKRVASAAELSLEKE 242

Query: 2903 LLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIV 2724
            LLERLRAEA +MRKWV VKKAGVTQ++VD I FIWK NELAM+KFD+PLCRN+HRA+EIV
Sbjct: 243  LLERLRAEAAKMRKWVKVKKAGVTQAIVDDIKFIWKTNELAMVKFDVPLCRNMHRAQEIV 302

Query: 2723 EIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISS 2544
            E KTGG+VVW +KD LV+YRG NYQ + K  P+M P SA  Q+  S D     LE+N SS
Sbjct: 303  ETKTGGMVVWGKKDTLVIYRGCNYQSSSKFFPKMRPCSADRQETLSSDHMQPDLEEN-SS 361

Query: 2543 SQVKTNGSVVNEQMSGKDGHEKNI-------------PINGSLFEREADRLLDGLGPRFI 2403
             Q K+  S V+E+MS KD  E  I             P + SL+E+EADRLLDGLGPRFI
Sbjct: 362  YQYKSFESPVDEKMSRKDAEEDCIQSGTFQETSMSCQPTSRSLYEKEADRLLDGLGPRFI 421

Query: 2402 DWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGR 2223
            DWW  KPLPVDADLLPEV+PGF+ P R CP H RSKLTDDELT+LRK AR LPTHFVLGR
Sbjct: 422  DWWMHKPLPVDADLLPEVVPGFKAPIRRCPPHTRSKLTDDELTFLRKFARSLPTHFVLGR 481

Query: 2222 NRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILY 2043
            NRKLQGLAAAILKLWEK  IAKIAVK+G  NTNNEQMAYEL+     VL+LRNKF I+LY
Sbjct: 482  NRKLQGLAAAILKLWEKSLIAKIAVKFGVPNTNNEQMAYELRAR---VLILRNKFIILLY 538

Query: 2042 RGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQD 1863
            RGKDFLP  VA++VA+RE+EL R QL EE  R KAIETF  + E  VNT   GTLSEFQD
Sbjct: 539  RGKDFLPCGVADLVAKREVELTRWQLYEEHARQKAIETFCESGEPLVNT--VGTLSEFQD 596

Query: 1862 IRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRP 1683
            I++E G+L  EN+  E+KLEAEKE+L +ELRNQERK  IL  KIE+S  EL KLNS   P
Sbjct: 597  IQTEYGELIKENKNVEIKLEAEKEQLERELRNQERKFFILNKKIEKSTNELSKLNSQRTP 656

Query: 1682 SEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQ 1503
            +EQ+ DQEM+TEEE+EC R +GLKM S LVLGRRGVF+GV+EGLHQHWKHRE+VKVITMQ
Sbjct: 657  AEQDVDQEMMTEEEKECLRTVGLKMHSCLVLGRRGVFNGVMEGLHQHWKHREVVKVITMQ 716

Query: 1502 RMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALN 1323
            ++  QV++TAK+LEAESGGILVSV K+KEGHAIIIYRGKNYRRP      NLL+KR+AL+
Sbjct: 717  KLFRQVMHTAKLLEAESGGILVSVDKLKEGHAIIIYRGKNYRRPLMPTGGNLLSKRKALH 776

Query: 1322 RSLEMQRIGSLKFFAHQRQQAISDLKLKL 1236
            RSLEMQRIGSLKFFA QRQQA  DLKLKL
Sbjct: 777  RSLEMQRIGSLKFFASQRQQATLDLKLKL 805


>ref|XP_006482225.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Citrus sinensis]
            gi|568857343|ref|XP_006482226.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 771

 Score =  809 bits (2089), Expect = 0.0
 Identities = 429/666 (64%), Positives = 515/666 (77%), Gaps = 15/666 (2%)
 Frame = -2

Query: 3188 KPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKRE-DEFEF-GVPLEQFLGDG 3015
            K +  LT K SG RGK+AM+KI+++IEKLQ+    +ET+K+  ++FEF G   E    + 
Sbjct: 86   KTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEE 145

Query: 3014 DSR--IGGKMPWSKDERMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKA 2841
            D R   GGK+PW +++R VFRR KKE++VT AE  LDG LLERL+ EA +MRKWV VKKA
Sbjct: 146  DLRGGFGGKVPWLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKA 205

Query: 2840 GVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRG 2661
            GVT+SVV +I   W+ NELAM+KFD+PLCRN+ RAREI+E+KTGGLV+W +KD  VVYRG
Sbjct: 206  GVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG 265

Query: 2660 GNYQLTHKACPEMYPWSAGGQKAYSLDDRCHI-LEDNISSSQVKTNGSVVNEQMSGKDGH 2484
             + + + K CP     SA  Q+A  L    H+ LE  ++ S +K+N + +++  S KDG 
Sbjct: 266  DSSKSSVKMCPR----SADDQEA-PLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGE 320

Query: 2483 E----------KNIPINGSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFR 2334
            E          KN+ I+ SL+ERE DRLLDGLGPRF+DWW  KPLPVD DLLPEV+PGF+
Sbjct: 321  ENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFK 380

Query: 2333 PPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKI 2154
            PPFRL P  ARSKLTDDELTYLRKLA PLPTHFVLGRNR LQGLA AILKLWEK  +AKI
Sbjct: 381  PPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKI 440

Query: 2153 AVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKR 1974
             VKWG  NT+NEQMA ELK LTGGVLLLRNKF IILYRG DFLP  V N++ ERE EL+ 
Sbjct: 441  TVKWGIPNTDNEQMANELKHLTGGVLLLRNKFLIILYRGNDFLPCGVENLIVERERELQI 500

Query: 1973 CQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEK 1794
            CQ  EE  RLKAIETF+   E    T  AGTLSEFQ+I+S+ GDLK  NRE EL+LEAE 
Sbjct: 501  CQNHEEGARLKAIETFHLPHEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEI 560

Query: 1793 ERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRKIGL 1614
            E L +ELR QERKL IL  KIE+SAKEL +LNSAW+P EQ+ D EMITEEER+C  KIG+
Sbjct: 561  EDLERELRKQERKLFILNIKIEKSAKELSRLNSAWKPREQDPDLEMITEEERQCLHKIGM 620

Query: 1613 KMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVS 1434
            KM+S+L+LGRRGVFDGVIEGLHQHWK+RE+ +VIT Q++ +QVIYTAK L AESGGIL+S
Sbjct: 621  KMNSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 680

Query: 1433 VVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAIS 1254
            V K+KEGHAIIIYRGKNYRRP K + QNLL+KR+AL RSLEMQR+GSLKFFA+QRQ+ IS
Sbjct: 681  VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFFAYQRQRVIS 740

Query: 1253 DLKLKL 1236
            +LK+KL
Sbjct: 741  NLKIKL 746


>ref|XP_009357796.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Pyrus x bretschneideri]
          Length = 791

 Score =  808 bits (2087), Expect = 0.0
 Identities = 437/702 (62%), Positives = 527/702 (75%), Gaps = 40/702 (5%)
 Frame = -2

Query: 3221 RRTNSPSGGDGKPEPSLTE---KISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEF- 3054
            R  N    G+ KPE S +E   K+ G RG++A+++IV+SIE+L    + E+ +K   EF 
Sbjct: 86   RPRNRKIPGNAKPENSDSELGGKLVGIRGERAIKQIVRSIERLGPNENPEKPQKGFGEFG 145

Query: 3053 ----------------------EFGVP--LEQFLGDGDSRIGGK-MPWSKDERMVFRRTK 2949
                                  EFG+   LE      DS+I GK MPW ++ERMV  + K
Sbjct: 146  IWDCLEGLVQEDNSVGNHRGFGEFGIGDCLEGLGKADDSKISGKKMPWEREERMVCPKVK 205

Query: 2948 KEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNNELAMLKF 2769
            +E+V +AAEL+L+  LLERLR EA +MRKW+ VKKAGVTQ+VVD + FIWK NELAMLKF
Sbjct: 206  RERVASAAELTLEKELLERLRGEAAKMRKWIKVKKAGVTQAVVDDVKFIWKGNELAMLKF 265

Query: 2768 DMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWSAGGQKAY 2589
            D+PLCRN++RA+EI+E+KTGG+VVW  KD +V+YRG NYQLT K  P+  P SAG Q+  
Sbjct: 266  DVPLCRNMYRAQEILEMKTGGMVVWRNKDSIVIYRGCNYQLTSKFFPKRRPRSAGCQETS 325

Query: 2588 SLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGH--------EKNI---PINGSLFERE 2442
            S  D   +  +  S  Q +T  S V+E+++ K+          E N+   P + SL+E+E
Sbjct: 326  S-SDLIQLDLEKSSIYQSETFESAVDEKLNKKNDKGDPTQIFLETNVSCQPTSSSLYEKE 384

Query: 2441 ADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRK 2262
            ADRLLDGLGPRFIDWW  KPLPVDADLLPEV+PGF+ P R CP + RS+LTDDELT LRK
Sbjct: 385  ADRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFKAPIRRCPPNTRSRLTDDELTNLRK 444

Query: 2261 LARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGG 2082
             AR LPTHFV+GRNRKLQGLAAAILKLWEK  IAKIAVK+G  NTNNEQMAYELKCLTGG
Sbjct: 445  SARSLPTHFVVGRNRKLQGLAAAILKLWEKSQIAKIAVKFGVPNTNNEQMAYELKCLTGG 504

Query: 2081 VLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASV 1902
            VLLLRNKF I+LYRGKDFLP  V+++VA+RE+EL R QL EE  RLKAIETF   D+   
Sbjct: 505  VLLLRNKFIILLYRGKDFLPCGVSDLVAKREIELNRWQLHEEHARLKAIETFSEDDDPLG 564

Query: 1901 NTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERS 1722
            +TGT GTLSEF +I++E GDL   N++ E+KLEAEK RL +ELRNQERK+ IL  KIE+S
Sbjct: 565  STGTVGTLSEFHNIQTEYGDLIRRNKDIEIKLEAEKARLGRELRNQERKVFILNRKIEKS 624

Query: 1721 AKELLKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQH 1542
              +L KLNS W P+EQ+ DQEMITEEERECFRKIGLKM S LVLGRRGVF+GV EG+HQH
Sbjct: 625  TNKLSKLNSQWTPAEQDVDQEMITEEERECFRKIGLKMHSCLVLGRRGVFNGVKEGIHQH 684

Query: 1541 WKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKS 1362
            WKHRE+VKVITMQ++  QV+YTAK LEAESGG+LVSV K+K+GHAIIIYRG+NYRRP K 
Sbjct: 685  WKHREVVKVITMQKLFGQVMYTAKFLEAESGGVLVSVDKLKKGHAIIIYRGRNYRRPFKP 744

Query: 1361 VPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKLKL 1236
            +  NLL+KR+AL+RSLEMQRIGSLKFFA QRQQA  DLKLKL
Sbjct: 745  ICGNLLSKRKALHRSLEMQRIGSLKFFASQRQQAALDLKLKL 786


>ref|XP_009357794.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Pyrus x bretschneideri]
          Length = 807

 Score =  808 bits (2087), Expect = 0.0
 Identities = 437/702 (62%), Positives = 527/702 (75%), Gaps = 40/702 (5%)
 Frame = -2

Query: 3221 RRTNSPSGGDGKPEPSLTE---KISGGRGKKAMEKIVQSIEKLQETHSSEETRKREDEF- 3054
            R  N    G+ KPE S +E   K+ G RG++A+++IV+SIE+L    + E+ +K   EF 
Sbjct: 86   RPRNRKIPGNAKPENSDSELGGKLVGIRGERAIKQIVRSIERLGPNENPEKPQKGFGEFG 145

Query: 3053 ----------------------EFGVP--LEQFLGDGDSRIGGK-MPWSKDERMVFRRTK 2949
                                  EFG+   LE      DS+I GK MPW ++ERMV  + K
Sbjct: 146  IWDCLEGLVQEDNSVGNHRGFGEFGIGDCLEGLGKADDSKISGKKMPWEREERMVCPKVK 205

Query: 2948 KEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNNELAMLKF 2769
            +E+V +AAEL+L+  LLERLR EA +MRKW+ VKKAGVTQ+VVD + FIWK NELAMLKF
Sbjct: 206  RERVASAAELTLEKELLERLRGEAAKMRKWIKVKKAGVTQAVVDDVKFIWKGNELAMLKF 265

Query: 2768 DMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWSAGGQKAY 2589
            D+PLCRN++RA+EI+E+KTGG+VVW  KD +V+YRG NYQLT K  P+  P SAG Q+  
Sbjct: 266  DVPLCRNMYRAQEILEMKTGGMVVWRNKDSIVIYRGCNYQLTSKFFPKRRPRSAGCQETS 325

Query: 2588 SLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGH--------EKNI---PINGSLFERE 2442
            S  D   +  +  S  Q +T  S V+E+++ K+          E N+   P + SL+E+E
Sbjct: 326  S-SDLIQLDLEKSSIYQSETFESAVDEKLNKKNDKGDPTQIFLETNVSCQPTSSSLYEKE 384

Query: 2441 ADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRK 2262
            ADRLLDGLGPRFIDWW  KPLPVDADLLPEV+PGF+ P R CP + RS+LTDDELT LRK
Sbjct: 385  ADRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFKAPIRRCPPNTRSRLTDDELTNLRK 444

Query: 2261 LARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGG 2082
             AR LPTHFV+GRNRKLQGLAAAILKLWEK  IAKIAVK+G  NTNNEQMAYELKCLTGG
Sbjct: 445  SARSLPTHFVVGRNRKLQGLAAAILKLWEKSQIAKIAVKFGVPNTNNEQMAYELKCLTGG 504

Query: 2081 VLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASV 1902
            VLLLRNKF I+LYRGKDFLP  V+++VA+RE+EL R QL EE  RLKAIETF   D+   
Sbjct: 505  VLLLRNKFIILLYRGKDFLPCGVSDLVAKREIELNRWQLHEEHARLKAIETFSEDDDPLG 564

Query: 1901 NTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERS 1722
            +TGT GTLSEF +I++E GDL   N++ E+KLEAEK RL +ELRNQERK+ IL  KIE+S
Sbjct: 565  STGTVGTLSEFHNIQTEYGDLIRRNKDIEIKLEAEKARLGRELRNQERKVFILNRKIEKS 624

Query: 1721 AKELLKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQH 1542
              +L KLNS W P+EQ+ DQEMITEEERECFRKIGLKM S LVLGRRGVF+GV EG+HQH
Sbjct: 625  TNKLSKLNSQWTPAEQDVDQEMITEEERECFRKIGLKMHSCLVLGRRGVFNGVKEGIHQH 684

Query: 1541 WKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKS 1362
            WKHRE+VKVITMQ++  QV+YTAK LEAESGG+LVSV K+K+GHAIIIYRG+NYRRP K 
Sbjct: 685  WKHREVVKVITMQKLFGQVMYTAKFLEAESGGVLVSVDKLKKGHAIIIYRGRNYRRPFKP 744

Query: 1361 VPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKLKL 1236
            +  NLL+KR+AL+RSLEMQRIGSLKFFA QRQQA  DLKLKL
Sbjct: 745  ICGNLLSKRKALHRSLEMQRIGSLKFFASQRQQAALDLKLKL 786


>emb|CDP02762.1| unnamed protein product [Coffea canephora]
          Length = 826

 Score =  808 bits (2087), Expect = 0.0
 Identities = 431/692 (62%), Positives = 513/692 (74%), Gaps = 39/692 (5%)
 Frame = -2

Query: 3194 DGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRK------------------ 3069
            D  P+ +LT K+  GRGKK M+KI + I+KLQ++ S E+T K                  
Sbjct: 121  DHHPDQALTGKMGAGRGKKEMKKIFKGIKKLQDSKSLEKTHKKPEMVKFIFSPGELPGGG 180

Query: 3068 -----------REDE----------FEFGVPLEQFLGDGDSRIGGKMPWSKDERMVFRRT 2952
                       REDE           E G  L +  G+G ++ GGKMPW + E++V  + 
Sbjct: 181  DSAYVEGLISEREDEKMDAQKIVEESEVGFQLGKVEGEGKAKFGGKMPWDRGEKLVTWKV 240

Query: 2951 KKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNNELAMLK 2772
            KKEKVVTAAELSLD  LL+RLR EA RMRKWV V KAGVTQ VV ++H IWKNNELAMLK
Sbjct: 241  KKEKVVTAAELSLDEELLDRLRDEASRMRKWVKVMKAGVTQEVVHRVHAIWKNNELAMLK 300

Query: 2771 FDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWSAGGQKA 2592
            FD+PLCRN+ RA+EI+E+KTGG+VVW ++  LV+YRGGNY    K               
Sbjct: 301  FDLPLCRNMDRAQEILEMKTGGVVVWRKQHALVIYRGGNYLSALKT-------------- 346

Query: 2591 YSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKNIPINGSLFEREADRLLDGLGP 2412
             S D+ C    D I + +V ++   +   MS  D  E+N+ +NGSL+E+EADRLLDGLGP
Sbjct: 347  -SFDNCCR---DTIITFEVNSSEHGLVGMMSKMDKKEENVLMNGSLYEKEADRLLDGLGP 402

Query: 2411 RFIDWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFV 2232
            RF DWW  KPLPVD DLL EV+PGF PPFRLCP HARS+LTDDELTYLRKLARPLPTHFV
Sbjct: 403  RFYDWWWRKPLPVDGDLLREVVPGFMPPFRLCPPHARSQLTDDELTYLRKLARPLPTHFV 462

Query: 2231 LGRNRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFI 2052
            LGRNRKLQGLAAAILKLWEKCHIAKIA+KWG  NT+N+QMAYELKCLTGG+LLLRNKF I
Sbjct: 463  LGRNRKLQGLAAAILKLWEKCHIAKIAIKWGVPNTDNKQMAYELKCLTGGILLLRNKFLI 522

Query: 2051 ILYRGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASVNTGTAGTLSE 1872
            ILYRGKDFLP +VA +V  REMEL  CQL EE+ RL+A ET  AT   S  +  +GTLSE
Sbjct: 523  ILYRGKDFLPSRVAELVTIREMELTECQLMEESARLRASET--ATQIPSSKSANSGTLSE 580

Query: 1871 FQDIRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERSAKELLKLNSA 1692
            F  I+S+   L + N + E++LEAEKE+L +ELR+Q+RKL +LK KIE+SAK L  LNS 
Sbjct: 581  FLRIQSKHLGLGHGNSKAEVELEAEKEQLERELRDQQRKLFLLKKKIEKSAKRLADLNSL 640

Query: 1691 WRPSEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVI 1512
            WRP+E++ DQEM+T+EEREC RK+GLKM SSLVLGRRGVF+GVIE LHQ+WKHREIVKVI
Sbjct: 641  WRPAERDTDQEMLTQEERECLRKMGLKMVSSLVLGRRGVFNGVIESLHQYWKHREIVKVI 700

Query: 1511 TMQRMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKRE 1332
            TMQ+M SQV+YTAK LEAESGGILVSV K KEGH+II+YRGKNYRR PK  P NL ++RE
Sbjct: 701  TMQKMFSQVVYTAKFLEAESGGILVSVDKHKEGHSIILYRGKNYRR-PKLAPLNLPSRRE 759

Query: 1331 ALNRSLEMQRIGSLKFFAHQRQQAISDLKLKL 1236
            AL+RSLEMQRIGSLKFFA QR+Q +SDL+ KL
Sbjct: 760  ALSRSLEMQRIGSLKFFARQREQMVSDLQFKL 791


>ref|XP_009787271.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nicotiana sylvestris]
          Length = 796

 Score =  807 bits (2085), Expect = 0.0
 Identities = 427/681 (62%), Positives = 517/681 (75%), Gaps = 31/681 (4%)
 Frame = -2

Query: 3185 PEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKRED-EFEFGVP---------- 3039
            P  +L+ K+SGGRGKKAM+KI QSI+KLQET + E T    D +FEF  P          
Sbjct: 106  PSDALSGKVSGGRGKKAMKKIYQSIDKLQETQNLEFTHVETDAKFEFQFPPASLSNWKDV 165

Query: 3038 --------------------LEQFLGDGDSRIGGKMPWSKDERMVFRRTKKEKVVTAAEL 2919
                                 +   G+ + R G KMPW  +ER+V+RR KKEKV+TAAEL
Sbjct: 166  NFQFNEQTPYVKKDKVERVEFDILSGESEGRSGEKMPWESEERIVYRRMKKEKVLTAAEL 225

Query: 2918 SLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHR 2739
             LD VLLERLR EAG+++KWV VKKAGVTQ VV QIH +WKNNELAMLKFD+PLCRN+ R
Sbjct: 226  KLDSVLLERLRGEAGQIQKWVKVKKAGVTQVVVHQIHLLWKNNELAMLKFDLPLCRNMDR 285

Query: 2738 AREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWSAGGQKAYSLDDRCHILE 2559
            A+EI+E+KTGG VVW +K+ LVVYRG +Y L  K  P+        Q+  S  D      
Sbjct: 286  AQEIIEMKTGGFVVWRKKNALVVYRGCDYTLRQKDDPKRLHDFLRSQQNSSSTDTFKKTS 345

Query: 2558 DNISSSQVKTNGSVVNEQMSGKDGHEKNIPINGSLFEREADRLLDGLGPRFIDWWRPKPL 2379
              +SS+  +++  V+    SG+   + ++ IN SLFEREA+RLLD LGPR++DWW PKPL
Sbjct: 346  AFLSSNSSRSSVDVI----SGESSEDDSLTINESLFEREANRLLDDLGPRYVDWWWPKPL 401

Query: 2378 PVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLA 2199
            PVDADLLPEV+PGF+PPFRLCP  +RSKLTDDELT+LRKLAR LPTHFVLGRNRKLQGLA
Sbjct: 402  PVDADLLPEVVPGFKPPFRLCPPRSRSKLTDDELTHLRKLARSLPTHFVLGRNRKLQGLA 461

Query: 2198 AAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPP 2019
            AA++KLWEKCHIAKIA+KWG  NTNNE MA ELK LTGGVLLLRNKFFIILYRGKDFLP 
Sbjct: 462  AAVIKLWEKCHIAKIALKWGIPNTNNELMANELKYLTGGVLLLRNKFFIILYRGKDFLPS 521

Query: 2018 KVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDL 1839
            +VA++VAERE+EL+ CQL+EEA R KAIET   T   S+++   GTLSEFQ I +E G  
Sbjct: 522  QVASLVAEREVELRICQLEEEAARFKAIETLPITTGESMSSSNVGTLSEFQTI-AEPG-- 578

Query: 1838 KNENREHELKLEAEKERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQE 1659
              E  E E++L AEKERL KELR+++  L ILK KIE+S+  L KL++AWRP++ + D+E
Sbjct: 579  -REKSETEVQLVAEKERLEKELRDEQHSLYILKKKIEKSSIALGKLDAAWRPAKPDVDKE 637

Query: 1658 MITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIY 1479
            ++T+EER   R+IGLKMD SLVLGRRGVFDGV+ GLHQHWKHRE+VKVITMQ++ S VI+
Sbjct: 638  ILTQEERRSLRQIGLKMDRSLVLGRRGVFDGVLAGLHQHWKHREVVKVITMQKIFSHVIH 697

Query: 1478 TAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRI 1299
            TA +LEAESGGILVSV K+KEGHAI+IYRGKNYRR P+ VPQNLL KR+AL+RSLEMQR+
Sbjct: 698  TANLLEAESGGILVSVDKLKEGHAIVIYRGKNYRR-PELVPQNLLNKRQALSRSLEMQRL 756

Query: 1298 GSLKFFAHQRQQAISDLKLKL 1236
            GSLKF+A+Q +QAISDLK KL
Sbjct: 757  GSLKFYANQTEQAISDLKCKL 777


>ref|XP_010108863.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis] gi|587933540|gb|EXC20503.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 828

 Score =  806 bits (2082), Expect = 0.0
 Identities = 436/673 (64%), Positives = 505/673 (75%), Gaps = 24/673 (3%)
 Frame = -2

Query: 3173 LTEKISGGRGKKAMEKIVQSIEKL--QETHSSEETRKR-EDEFEFGVPLEQFLGDGDSRI 3003
            LT+K+ G RGK  ++KI + IE+L  +    SEET+K    +   G  LE   G G+SR 
Sbjct: 105  LTDKLVGRRGKNVIKKIARRIEELGRKSKVDSEETQKDFVGKNGIGDCLE---GLGESRS 161

Query: 3002 GG-KMPWSKDERMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQS 2826
            GG +MPW KDE  VFRR KKEK+V++AEL L+  LLERLR+EA +MRKWV VKKAGVT+ 
Sbjct: 162  GGERMPWEKDEGFVFRRMKKEKIVSSAELRLERELLERLRSEARKMRKWVKVKKAGVTKE 221

Query: 2825 VVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQL 2646
            VV+ + F+WK+NELAM+KFD+PLCRN+ RA+EI+E+KTGGLVVW RKD  V+YRG NYQ 
Sbjct: 222  VVEDVKFVWKSNELAMVKFDVPLCRNMDRAQEILEMKTGGLVVWRRKDAQVIYRGCNYQP 281

Query: 2645 THKACPEMYPWSAGGQKA-----YSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHE 2481
            T K  P  Y   +G Q+        LD R        S S+VK+  + +  ++S K+   
Sbjct: 282  TSKTFPRTYAGFSGHQETPFSNLVQLDSR-----KGNSVSEVKSYENTIERKISKKNTEG 336

Query: 2480 KNIPI------------NGSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGF 2337
            + IP             + SL+ READRLLDGLGPRFIDWW  KPLPVDADLLPEV+PGF
Sbjct: 337  ETIPTAIILKNDANFQPSSSLYVREADRLLDGLGPRFIDWWMNKPLPVDADLLPEVVPGF 396

Query: 2336 RPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAK 2157
            RPPFR CP H RSKLTD+ELTYLRKLA  LPTHFVLGRNRKLQGLAAAILKLWEKCHIAK
Sbjct: 397  RPPFRRCPPHTRSKLTDEELTYLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKCHIAK 456

Query: 2156 IAVKWGSLNTNNEQMAYELK---CLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREM 1986
            IAVK G  NTNNEQMAYELK   CLTGG LLLRNKF IILYRGKDFLP ++A ++ +RE 
Sbjct: 457  IAVKLGVPNTNNEQMAYELKARICLTGGDLLLRNKFIIILYRGKDFLPDQIAELITKRET 516

Query: 1985 ELKRCQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKL 1806
            EL+ CQL EE  RL   E  +  DE    T  AGTLSEF DI+ E GD    N E +L  
Sbjct: 517  ELEYCQLYEEHARLVVAEKVFVADEPLKKTSPAGTLSEFHDIQIEYGDSNKGNIEVKLPF 576

Query: 1805 EAEKERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFR 1626
            EAEKERL  ELR QERKL IL SKI++S KELLKLN+AW+PSE++ DQEM+TEEERECFR
Sbjct: 577  EAEKERLESELRKQERKLLILNSKIKKSTKELLKLNTAWKPSERDGDQEMLTEEERECFR 636

Query: 1625 KIGLKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGG 1446
            KIGLKM S LVLGRRG+FDGVIEGL QHWKHRE+ KVITMQR   QV+YTA  LEAESGG
Sbjct: 637  KIGLKMRSVLVLGRRGIFDGVIEGLRQHWKHREVAKVITMQRYFWQVMYTATSLEAESGG 696

Query: 1445 ILVSVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQ 1266
            +LVSV K+KEGHAIIIYRGKNYRRP K +  NLLTKR+AL+RSLEMQRIGSLKFFA+QR 
Sbjct: 697  LLVSVEKLKEGHAIIIYRGKNYRRPLKLISVNLLTKRKALSRSLEMQRIGSLKFFAYQRH 756

Query: 1265 QAISDLKLKLFAD 1227
            +AISDLKLKL  D
Sbjct: 757  RAISDLKLKLNLD 769


>ref|XP_009787273.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Nicotiana sylvestris]
          Length = 776

 Score =  806 bits (2081), Expect = 0.0
 Identities = 426/680 (62%), Positives = 516/680 (75%), Gaps = 31/680 (4%)
 Frame = -2

Query: 3185 PEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKRED-EFEFGVP---------- 3039
            P  +L+ K+SGGRGKKAM+KI QSI+KLQET + E T    D +FEF  P          
Sbjct: 106  PSDALSGKVSGGRGKKAMKKIYQSIDKLQETQNLEFTHVETDAKFEFQFPPASLSNWKDV 165

Query: 3038 --------------------LEQFLGDGDSRIGGKMPWSKDERMVFRRTKKEKVVTAAEL 2919
                                 +   G+ + R G KMPW  +ER+V+RR KKEKV+TAAEL
Sbjct: 166  NFQFNEQTPYVKKDKVERVEFDILSGESEGRSGEKMPWESEERIVYRRMKKEKVLTAAEL 225

Query: 2918 SLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHR 2739
             LD VLLERLR EAG+++KWV VKKAGVTQ VV QIH +WKNNELAMLKFD+PLCRN+ R
Sbjct: 226  KLDSVLLERLRGEAGQIQKWVKVKKAGVTQVVVHQIHLLWKNNELAMLKFDLPLCRNMDR 285

Query: 2738 AREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWSAGGQKAYSLDDRCHILE 2559
            A+EI+E+KTGG VVW +K+ LVVYRG +Y L  K  P+        Q+  S  D      
Sbjct: 286  AQEIIEMKTGGFVVWRKKNALVVYRGCDYTLRQKDDPKRLHDFLRSQQNSSSTDTFKKTS 345

Query: 2558 DNISSSQVKTNGSVVNEQMSGKDGHEKNIPINGSLFEREADRLLDGLGPRFIDWWRPKPL 2379
              +SS+  +++  V+    SG+   + ++ IN SLFEREA+RLLD LGPR++DWW PKPL
Sbjct: 346  AFLSSNSSRSSVDVI----SGESSEDDSLTINESLFEREANRLLDDLGPRYVDWWWPKPL 401

Query: 2378 PVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLA 2199
            PVDADLLPEV+PGF+PPFRLCP  +RSKLTDDELT+LRKLAR LPTHFVLGRNRKLQGLA
Sbjct: 402  PVDADLLPEVVPGFKPPFRLCPPRSRSKLTDDELTHLRKLARSLPTHFVLGRNRKLQGLA 461

Query: 2198 AAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPP 2019
            AA++KLWEKCHIAKIA+KWG  NTNNE MA ELK LTGGVLLLRNKFFIILYRGKDFLP 
Sbjct: 462  AAVIKLWEKCHIAKIALKWGIPNTNNELMANELKYLTGGVLLLRNKFFIILYRGKDFLPS 521

Query: 2018 KVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDL 1839
            +VA++VAERE+EL+ CQL+EEA R KAIET   T   S+++   GTLSEFQ I +E G  
Sbjct: 522  QVASLVAEREVELRICQLEEEAARFKAIETLPITTGESMSSSNVGTLSEFQTI-AEPG-- 578

Query: 1838 KNENREHELKLEAEKERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQE 1659
              E  E E++L AEKERL KELR+++  L ILK KIE+S+  L KL++AWRP++ + D+E
Sbjct: 579  -REKSETEVQLVAEKERLEKELRDEQHSLYILKKKIEKSSIALGKLDAAWRPAKPDVDKE 637

Query: 1658 MITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIY 1479
            ++T+EER   R+IGLKMD SLVLGRRGVFDGV+ GLHQHWKHRE+VKVITMQ++ S VI+
Sbjct: 638  ILTQEERRSLRQIGLKMDRSLVLGRRGVFDGVLAGLHQHWKHREVVKVITMQKIFSHVIH 697

Query: 1478 TAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRI 1299
            TA +LEAESGGILVSV K+KEGHAI+IYRGKNYRR P+ VPQNLL KR+AL+RSLEMQR+
Sbjct: 698  TANLLEAESGGILVSVDKLKEGHAIVIYRGKNYRR-PELVPQNLLNKRQALSRSLEMQRL 756

Query: 1298 GSLKFFAHQRQQAISDLKLK 1239
            GSLKF+A+Q +QAISDLK K
Sbjct: 757  GSLKFYANQTEQAISDLKCK 776


>ref|XP_009598916.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nicotiana tomentosiformis]
            gi|697179889|ref|XP_009598917.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X1 [Nicotiana tomentosiformis]
          Length = 815

 Score =  803 bits (2075), Expect = 0.0
 Identities = 437/724 (60%), Positives = 528/724 (72%), Gaps = 39/724 (5%)
 Frame = -2

Query: 3224 RRRTNSPSGGDGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKRED-EFEF 3048
            R++ ++       P  +L+ K+SGGRGKKAM+KI QSI+KLQET + E T    D +FEF
Sbjct: 108  RKKKDANFAKTQNPNDALSGKVSGGRGKKAMKKIYQSIDKLQETQNLEFTHVETDAKFEF 167

Query: 3047 GVPLEQFL----------------------------------GDGDSRIGGKMPWSKDER 2970
              P                                       G G+ R G KMPW  +ER
Sbjct: 168  QFPPGSLTHWKDVNFDFNEQTPYVKKDKVERVEFDILSRENEGRGNRRSGEKMPWESEER 227

Query: 2969 MVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNN 2790
             V+RR KKEKV+TAAEL LD +LLERLR EA +++KWV VKKAGVT++VVDQIH +WKNN
Sbjct: 228  FVYRRMKKEKVLTAAELKLDAMLLERLRGEAVKIQKWVKVKKAGVTRAVVDQIHLLWKNN 287

Query: 2789 ELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWS 2610
            ELAMLKFD+PLCRN+ RA+EI+E+KTGG VVW +K+ LVVYRG +Y L  K  P+ +   
Sbjct: 288  ELAMLKFDLPLCRNMDRAQEIIEMKTGGFVVWRKKNALVVYRGCDYTLRQKDDPKRHHDF 347

Query: 2609 AGGQK----AYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKNIPINGSLFERE 2442
               Q+     Y+          N S S V        + +SG+   E ++ IN SL+ERE
Sbjct: 348  LRSQQNNSSTYTFKKTSAFSSSNSSRSSV--------DVISGESSEEDSLTINESLYERE 399

Query: 2441 ADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRK 2262
            A+RLLD LGPR++DWW PKPLPVDADLLPEV+PGF+PPFRLCP  +RSKLTDDELT+LRK
Sbjct: 400  ANRLLDDLGPRYVDWWWPKPLPVDADLLPEVVPGFKPPFRLCPPRSRSKLTDDELTHLRK 459

Query: 2261 LARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGG 2082
            LAR LPTHFVLGRNRKLQGLAAAI+KLWEKCHIAKIA+KWG  NTNNE MA ELK LTGG
Sbjct: 460  LARSLPTHFVLGRNRKLQGLAAAIIKLWEKCHIAKIALKWGIPNTNNELMANELKYLTGG 519

Query: 2081 VLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASV 1902
            VLLLRNKFFIILYRGKDFLP +VA++VAERE+EL+RCQL+EEA R KAIET   T   S+
Sbjct: 520  VLLLRNKFFIILYRGKDFLPSQVASLVAEREVELRRCQLEEEAARFKAIETLPITTGESM 579

Query: 1901 NTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERS 1722
            +    GTLSEFQ I +E G    E  E E++L AEKERL KELR+++  L ILK KIE+S
Sbjct: 580  SISNVGTLSEFQTI-AEPG---REKSETEVQLVAEKERLEKELRDEQHSLYILKKKIEKS 635

Query: 1721 AKELLKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQH 1542
            +  L KL++AWRP++ + D+E++T+EER   R+IGLKMD SLVLGRRGVFDGV+ GLHQH
Sbjct: 636  SIALGKLDAAWRPAKPDVDKEILTQEERRSLRQIGLKMDRSLVLGRRGVFDGVLAGLHQH 695

Query: 1541 WKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKS 1362
            WKHRE+VKVITMQ++ SQVI+TA +LEAESGGILVSV K+KEGHAIIIYRGKNYRR P+ 
Sbjct: 696  WKHREVVKVITMQKIFSQVIHTANLLEAESGGILVSVDKLKEGHAIIIYRGKNYRR-PEL 754

Query: 1361 VPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKLKLFADRVTEDQGS*IKENLR 1182
            VPQNLL KR AL+RSLEMQR+GSLKF+A+Q +QAISDLK KL    V   Q   + E+L+
Sbjct: 755  VPQNLLNKRLALSRSLEMQRLGSLKFYANQTEQAISDLKCKLVEYTVKIGQ---MGEDLK 811

Query: 1181 NSQA 1170
             S A
Sbjct: 812  GSGA 815


>gb|KHG25518.1| hypothetical protein F383_03195 [Gossypium arboreum]
          Length = 737

 Score =  803 bits (2073), Expect = 0.0
 Identities = 424/662 (64%), Positives = 505/662 (76%), Gaps = 4/662 (0%)
 Frame = -2

Query: 3209 SPSGGDGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETR-KREDEFEFGVPLE 3033
            S +     PE +L  K SG RGKK M+KI++ +EKLQ   + ++T+  + +EFE G  LE
Sbjct: 79   SSNNNSKAPEKALFGKESGVRGKKVMKKIIRDVEKLQGNGALDDTQIGKFEEFEIGNWLE 138

Query: 3032 QFLGDGD-SRIGGKMPWSKDE-RMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKW 2859
            +   DG+  +   KMPW ++E ++VFRR KKEKV+T AE+ LD  LLERLR +A RMRKW
Sbjct: 139  EIGSDGEVKKFDRKMPWVREEEKVVFRRMKKEKVLTQAEIILDNDLLERLRKKATRMRKW 198

Query: 2858 VMVKKAGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDI 2679
            V V KAGVTQ VVD+I   W NNEL MLKF +PLCRN+ RA EIVE+KTGGLVVWC+KDI
Sbjct: 199  VKVMKAGVTQDVVDEIRLAWGNNELVMLKFGVPLCRNMDRASEIVEMKTGGLVVWCKKDI 258

Query: 2678 LVVYRGGNYQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISS-SQVKTNGSVVNEQM 2502
            LVVYRG N+ LT           + GQ+ ++     ++  DN ++ S  K+N S     +
Sbjct: 259  LVVYRGQNHWLT-----------SNGQRVFN-----NLASDNNTTMSPEKSNASTWRRSL 302

Query: 2501 SGKDGHEKNIPINGSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFR 2322
            +G+D  E N P+ GSL+ERE DRLLDGLGPRFIDWW  KPLPVDADLLPEV+PGF+PP R
Sbjct: 303  NGEDRDENNQPVVGSLYERETDRLLDGLGPRFIDWWMRKPLPVDADLLPEVVPGFKPPTR 362

Query: 2321 LCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKW 2142
            L P   R KLTD+ELT LRKLA PLP HFVLGRNR LQGLA +ILKLWEK  IAKIA+KW
Sbjct: 363  LSPPKTRPKLTDEELTNLRKLAHPLPFHFVLGRNRNLQGLANSILKLWEKSLIAKIAIKW 422

Query: 2141 GSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQ 1962
            G  NT+NEQMA ELK LTGGVLLLRNKF II YRGKDFLP  VAN V EREM L+RCQL 
Sbjct: 423  GVQNTDNEQMANELKDLTGGVLLLRNKFLIIFYRGKDFLPQGVANSVMEREMALRRCQLI 482

Query: 1961 EEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEKERLV 1782
            EE  R+K  ETF   +E+   T T GTL+EFQDI+++ G L+ EN E E+++EA+KE L 
Sbjct: 483  EEGARVKVAETFQVANESLAKTSTVGTLAEFQDIQTKYGVLEKENNELEIQIEAQKENLE 542

Query: 1781 KELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDS 1602
            +ELRNQERKL+IL  KIE+SAK+L KLNS+W+ +E + D E ITEEEREC RKIGLK+ S
Sbjct: 543  RELRNQERKLAILNGKIEKSAKKLAKLNSSWQTAEPDLDLETITEEERECLRKIGLKLSS 602

Query: 1601 SLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKM 1422
             LVLGRRGVF+GVIEG+HQHWKHRE+VKVITMQR   +VIYTAKML AESGGILVSV K+
Sbjct: 603  CLVLGRRGVFNGVIEGVHQHWKHREVVKVITMQRAFLRVIYTAKMLVAESGGILVSVEKL 662

Query: 1421 KEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKL 1242
            KEGHAIIIYRGKNYRRP K +  +LLTKREAL RS+E+QRIGSLKFFA+QR+QAI DLKL
Sbjct: 663  KEGHAIIIYRGKNYRRPSKLMTDHLLTKREALQRSIELQRIGSLKFFAYQRRQAILDLKL 722

Query: 1241 KL 1236
            KL
Sbjct: 723  KL 724


>ref|XP_009598920.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Nicotiana tomentosiformis]
          Length = 795

 Score =  801 bits (2070), Expect = 0.0
 Identities = 430/701 (61%), Positives = 518/701 (73%), Gaps = 39/701 (5%)
 Frame = -2

Query: 3224 RRRTNSPSGGDGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKRED-EFEF 3048
            R++ ++       P  +L+ K+SGGRGKKAM+KI QSI+KLQET + E T    D +FEF
Sbjct: 108  RKKKDANFAKTQNPNDALSGKVSGGRGKKAMKKIYQSIDKLQETQNLEFTHVETDAKFEF 167

Query: 3047 GVPLEQFL----------------------------------GDGDSRIGGKMPWSKDER 2970
              P                                       G G+ R G KMPW  +ER
Sbjct: 168  QFPPGSLTHWKDVNFDFNEQTPYVKKDKVERVEFDILSRENEGRGNRRSGEKMPWESEER 227

Query: 2969 MVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGVTQSVVDQIHFIWKNN 2790
             V+RR KKEKV+TAAEL LD +LLERLR EA +++KWV VKKAGVT++VVDQIH +WKNN
Sbjct: 228  FVYRRMKKEKVLTAAELKLDAMLLERLRGEAVKIQKWVKVKKAGVTRAVVDQIHLLWKNN 287

Query: 2789 ELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGNYQLTHKACPEMYPWS 2610
            ELAMLKFD+PLCRN+ RA+EI+E+KTGG VVW +K+ LVVYRG +Y L  K  P+ +   
Sbjct: 288  ELAMLKFDLPLCRNMDRAQEIIEMKTGGFVVWRKKNALVVYRGCDYTLRQKDDPKRHHDF 347

Query: 2609 AGGQK----AYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKNIPINGSLFERE 2442
               Q+     Y+          N S S V        + +SG+   E ++ IN SL+ERE
Sbjct: 348  LRSQQNNSSTYTFKKTSAFSSSNSSRSSV--------DVISGESSEEDSLTINESLYERE 399

Query: 2441 ADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLCPQHARSKLTDDELTYLRK 2262
            A+RLLD LGPR++DWW PKPLPVDADLLPEV+PGF+PPFRLCP  +RSKLTDDELT+LRK
Sbjct: 400  ANRLLDDLGPRYVDWWWPKPLPVDADLLPEVVPGFKPPFRLCPPRSRSKLTDDELTHLRK 459

Query: 2261 LARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKWGSLNTNNEQMAYELKCLTGG 2082
            LAR LPTHFVLGRNRKLQGLAAAI+KLWEKCHIAKIA+KWG  NTNNE MA ELK LTGG
Sbjct: 460  LARSLPTHFVLGRNRKLQGLAAAIIKLWEKCHIAKIALKWGIPNTNNELMANELKYLTGG 519

Query: 2081 VLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQEEALRLKAIETFYATDEASV 1902
            VLLLRNKFFIILYRGKDFLP +VA++VAERE+EL+RCQL+EEA R KAIET   T   S+
Sbjct: 520  VLLLRNKFFIILYRGKDFLPSQVASLVAEREVELRRCQLEEEAARFKAIETLPITTGESM 579

Query: 1901 NTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEKERLVKELRNQERKLSILKSKIERS 1722
            +    GTLSEFQ I +E G    E  E E++L AEKERL KELR+++  L ILK KIE+S
Sbjct: 580  SISNVGTLSEFQTI-AEPG---REKSETEVQLVAEKERLEKELRDEQHSLYILKKKIEKS 635

Query: 1721 AKELLKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDSSLVLGRRGVFDGVIEGLHQH 1542
            +  L KL++AWRP++ + D+E++T+EER   R+IGLKMD SLVLGRRGVFDGV+ GLHQH
Sbjct: 636  SIALGKLDAAWRPAKPDVDKEILTQEERRSLRQIGLKMDRSLVLGRRGVFDGVLAGLHQH 695

Query: 1541 WKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKMKEGHAIIIYRGKNYRRPPKS 1362
            WKHRE+VKVITMQ++ SQVI+TA +LEAESGGILVSV K+KEGHAIIIYRGKNYRR P+ 
Sbjct: 696  WKHREVVKVITMQKIFSQVIHTANLLEAESGGILVSVDKLKEGHAIIIYRGKNYRR-PEL 754

Query: 1361 VPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKLK 1239
            VPQNLL KR AL+RSLEMQR+GSLKF+A+Q +QAISDLK K
Sbjct: 755  VPQNLLNKRLALSRSLEMQRLGSLKFYANQTEQAISDLKCK 795


>ref|XP_012491296.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium raimondii]
            gi|763775949|gb|KJB43072.1| hypothetical protein
            B456_007G182400 [Gossypium raimondii]
          Length = 734

 Score =  799 bits (2064), Expect = 0.0
 Identities = 421/662 (63%), Positives = 504/662 (76%), Gaps = 4/662 (0%)
 Frame = -2

Query: 3209 SPSGGDGKPEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETR-KREDEFEFGVPLE 3033
            S +     PE +L  K SG RGKK M+KI++ +EKLQ     ++ +  + +EFE G  LE
Sbjct: 76   SSNNNSKAPEKALFGKESGVRGKKVMKKIIRDVEKLQGNGVLDDNQIGKFEEFEIGNWLE 135

Query: 3032 QFLGDGD-SRIGGKMPWSKDE-RMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKW 2859
            +   DG+  +   KMPW ++E ++VFRR KKEKV+T AE+ LD  LLERLR +A RMRKW
Sbjct: 136  EIGSDGEVKKFDRKMPWVREEEKVVFRRMKKEKVLTQAEIILDNDLLERLRKKAMRMRKW 195

Query: 2858 VMVKKAGVTQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDI 2679
            V V KAGVTQ+VVD+I  +W+NNEL MLKF +PLCRN+ RA EIVE+KTGGLVVWC+KD+
Sbjct: 196  VKVMKAGVTQAVVDEIRLVWRNNELVMLKFGVPLCRNMDRASEIVEMKTGGLVVWCKKDV 255

Query: 2678 LVVYRGGNYQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISS-SQVKTNGSVVNEQM 2502
            LVVYRG N+ LT           + G++ ++     ++  DN ++ SQ K+N S     +
Sbjct: 256  LVVYRGQNHWLT-----------SNGRRVFN-----NLASDNNTTMSQEKSNASTWGRSL 299

Query: 2501 SGKDGHEKNIPINGSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFR 2322
            +G+D  E N P+ GSL+ERE DRLLDGLGPRFIDWW  KPLPVDADLLPEV+PGFRPP R
Sbjct: 300  NGEDRDENNQPVVGSLYERETDRLLDGLGPRFIDWWMRKPLPVDADLLPEVVPGFRPPTR 359

Query: 2321 LCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKIAVKW 2142
            L P   R KLTD+ELT LRKLA PLP HF LGRNR LQGLA AILKLWEK  IAKIA+KW
Sbjct: 360  LSPPKTRPKLTDEELTNLRKLAHPLPFHFALGRNRNLQGLANAILKLWEKSLIAKIAIKW 419

Query: 2141 GSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKRCQLQ 1962
            G+ NT+NEQMA ELK LTGGVLLLRNKF II YRGKDFLP  VAN V EREM L+RCQL 
Sbjct: 420  GAQNTDNEQMANELKDLTGGVLLLRNKFLIIFYRGKDFLPQGVANSVMEREMALRRCQLI 479

Query: 1961 EEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEKERLV 1782
            EE  R+K  ETF   +E    T T GTL+EFQDI+++ G L+ EN E E+++EA+KE L 
Sbjct: 480  EEDARVKVAETFQVANEPLAKTSTVGTLAEFQDIQTKYGVLEKENNELEIQIEAQKENLE 539

Query: 1781 KELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRKIGLKMDS 1602
            +ELRNQERKL+IL  KIE+SA +L KLNS+W+ +E + D E ITEEEREC RKIGLK+ S
Sbjct: 540  RELRNQERKLAILNGKIEKSATKLAKLNSSWQTAEPDLDLETITEEERECLRKIGLKLSS 599

Query: 1601 SLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVSVVKM 1422
             L LGRRGVF+GVIEG+HQHWKHRE+VKVITMQR   +VIYTAKML AESGGILVSV K+
Sbjct: 600  CLFLGRRGVFNGVIEGVHQHWKHREVVKVITMQRAFLRVIYTAKMLVAESGGILVSVEKL 659

Query: 1421 KEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAISDLKL 1242
            KEGHAIIIYRGKNYRRP K +  +LLTKREAL RS+E+QRIGSLKFFA+QR+QAI DLKL
Sbjct: 660  KEGHAIIIYRGKNYRRPSKLMTDHLLTKREALQRSIELQRIGSLKFFAYQRRQAILDLKL 719

Query: 1241 KL 1236
            KL
Sbjct: 720  KL 721


>ref|XP_007033220.1| maize chloroplast splicing factor CRS1, putative isoform 4 [Theobroma
            cacao] gi|508712249|gb|EOY04146.1| maize chloroplast
            splicing factor CRS1, putative isoform 4 [Theobroma
            cacao]
          Length = 767

 Score =  799 bits (2064), Expect = 0.0
 Identities = 420/666 (63%), Positives = 506/666 (75%), Gaps = 16/666 (2%)
 Frame = -2

Query: 3185 PEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKR-EDEFEFGVPLEQFLGDGD- 3012
            P+ +L  K SG RGKK M+KI++++E LQ     E+T+    +EFE G  LE+F  DG+ 
Sbjct: 100  PDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQIGIREEFEVGNWLEEFGSDGEV 159

Query: 3011 SRIGGKMPWSKDE-RMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGV 2835
             R  GKMPW ++E ++VFRR KKEK++T AE+SLD  LLERLR +A RMRKW+ V K GV
Sbjct: 160  KRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLLERLRRKAMRMRKWIKVMKLGV 219

Query: 2834 TQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGN 2655
            T++VVD+I   W+ NEL M+KF +PLCRN+ RAREI+E+KT GLVVW +KD LVVYRG +
Sbjct: 220  TKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCS 279

Query: 2654 YQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKN 2475
            + LT K     YP  A GQ+  S         +NI+ S  K NGS +   +  +D  +++
Sbjct: 280  HGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGSTLQSGLYREDREKES 339

Query: 2474 IPIN-------------GSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFR 2334
            +PIN             GSL+ERE DRLLDGLGPRFIDWW  KPLP+DADLLPE +PGFR
Sbjct: 340  MPINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFR 399

Query: 2333 PPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKI 2154
            PP RL P + R  LTDDEL YLRKL  PLP HF LG+NR LQGLAAAILKLWEK  IAKI
Sbjct: 400  PPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKSLIAKI 459

Query: 2153 AVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKR 1974
            A+KWG  NT+NEQMAYELK LTGGVLL+RNKF +ILYRGKDFLP  VAN+V EREM L+R
Sbjct: 460  AIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYRGKDFLPQGVANLVVEREMALRR 519

Query: 1973 CQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEK 1794
            CQL EE  R+K  ET    DE    T T GTLSEF+DI++  GDLK E+ E EL+LEA+K
Sbjct: 520  CQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQK 579

Query: 1793 ERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRKIGL 1614
            E L +ELRNQERKLSIL  KIE+SAKEL KL S+ +P+EQ+ D E+ITEEEREC RKIGL
Sbjct: 580  ENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGL 639

Query: 1613 KMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVS 1434
            K++S LVLGRRGVF+GVIEG++QHWKHRE+VKVITMQR+ ++VIYTAK L AE+GGILVS
Sbjct: 640  KLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVS 699

Query: 1433 VVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAIS 1254
            V K+KEGHA+IIYRGKNYRRP K +  NLLTKREAL +S+E+QRIGSLKFFA+QR+QAI 
Sbjct: 700  VEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAIL 759

Query: 1253 DLKLKL 1236
            DLKLKL
Sbjct: 760  DLKLKL 765


>ref|XP_007033219.1| maize chloroplast splicing factor CRS1, putative isoform 3 [Theobroma
            cacao] gi|508712248|gb|EOY04145.1| maize chloroplast
            splicing factor CRS1, putative isoform 3 [Theobroma
            cacao]
          Length = 788

 Score =  799 bits (2064), Expect = 0.0
 Identities = 420/666 (63%), Positives = 506/666 (75%), Gaps = 16/666 (2%)
 Frame = -2

Query: 3185 PEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKR-EDEFEFGVPLEQFLGDGD- 3012
            P+ +L  K SG RGKK M+KI++++E LQ     E+T+    +EFE G  LE+F  DG+ 
Sbjct: 100  PDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQIGIREEFEVGNWLEEFGSDGEV 159

Query: 3011 SRIGGKMPWSKDE-RMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGV 2835
             R  GKMPW ++E ++VFRR KKEK++T AE+SLD  LLERLR +A RMRKW+ V K GV
Sbjct: 160  KRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLLERLRRKAMRMRKWIKVMKLGV 219

Query: 2834 TQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGN 2655
            T++VVD+I   W+ NEL M+KF +PLCRN+ RAREI+E+KT GLVVW +KD LVVYRG +
Sbjct: 220  TKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCS 279

Query: 2654 YQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKN 2475
            + LT K     YP  A GQ+  S         +NI+ S  K NGS +   +  +D  +++
Sbjct: 280  HGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGSTLQSGLYREDREKES 339

Query: 2474 IPIN-------------GSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFR 2334
            +PIN             GSL+ERE DRLLDGLGPRFIDWW  KPLP+DADLLPE +PGFR
Sbjct: 340  MPINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFR 399

Query: 2333 PPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKI 2154
            PP RL P + R  LTDDEL YLRKL  PLP HF LG+NR LQGLAAAILKLWEK  IAKI
Sbjct: 400  PPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKSLIAKI 459

Query: 2153 AVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKR 1974
            A+KWG  NT+NEQMAYELK LTGGVLL+RNKF +ILYRGKDFLP  VAN+V EREM L+R
Sbjct: 460  AIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYRGKDFLPQGVANLVVEREMALRR 519

Query: 1973 CQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEK 1794
            CQL EE  R+K  ET    DE    T T GTLSEF+DI++  GDLK E+ E EL+LEA+K
Sbjct: 520  CQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQK 579

Query: 1793 ERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRKIGL 1614
            E L +ELRNQERKLSIL  KIE+SAKEL KL S+ +P+EQ+ D E+ITEEEREC RKIGL
Sbjct: 580  ENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGL 639

Query: 1613 KMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVS 1434
            K++S LVLGRRGVF+GVIEG++QHWKHRE+VKVITMQR+ ++VIYTAK L AE+GGILVS
Sbjct: 640  KLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVS 699

Query: 1433 VVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAIS 1254
            V K+KEGHA+IIYRGKNYRRP K +  NLLTKREAL +S+E+QRIGSLKFFA+QR+QAI 
Sbjct: 700  VEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAIL 759

Query: 1253 DLKLKL 1236
            DLKLKL
Sbjct: 760  DLKLKL 765


>ref|XP_007033218.1| maize chloroplast splicing factor CRS1, putative isoform 2 [Theobroma
            cacao] gi|508712247|gb|EOY04144.1| maize chloroplast
            splicing factor CRS1, putative isoform 2 [Theobroma
            cacao]
          Length = 804

 Score =  799 bits (2064), Expect = 0.0
 Identities = 420/666 (63%), Positives = 506/666 (75%), Gaps = 16/666 (2%)
 Frame = -2

Query: 3185 PEPSLTEKISGGRGKKAMEKIVQSIEKLQETHSSEETRKR-EDEFEFGVPLEQFLGDGD- 3012
            P+ +L  K SG RGKK M+KI++++E LQ     E+T+    +EFE G  LE+F  DG+ 
Sbjct: 126  PDKALFGKESGVRGKKVMKKIIRNVEMLQGNEVLEDTQIGIREEFEVGNWLEEFGSDGEV 185

Query: 3011 SRIGGKMPWSKDE-RMVFRRTKKEKVVTAAELSLDGVLLERLRAEAGRMRKWVMVKKAGV 2835
             R  GKMPW ++E ++VFRR KKEK++T AE+SLD  LLERLR +A RMRKW+ V K GV
Sbjct: 186  KRFDGKMPWLREEEKVVFRRMKKEKLLTQAEISLDKDLLERLRRKAMRMRKWIKVMKLGV 245

Query: 2834 TQSVVDQIHFIWKNNELAMLKFDMPLCRNIHRAREIVEIKTGGLVVWCRKDILVVYRGGN 2655
            T++VVD+I   W+ NEL M+KF +PLCRN+ RAREI+E+KT GLVVW +KD LVVYRG +
Sbjct: 246  TKAVVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCS 305

Query: 2654 YQLTHKACPEMYPWSAGGQKAYSLDDRCHILEDNISSSQVKTNGSVVNEQMSGKDGHEKN 2475
            + LT K     YP  A GQ+  S         +NI+ S  K NGS +   +  +D  +++
Sbjct: 306  HGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGSTLQSGLYREDREKES 365

Query: 2474 IPIN-------------GSLFEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFR 2334
            +PIN             GSL+ERE DRLLDGLGPRFIDWW  KPLP+DADLLPE +PGFR
Sbjct: 366  MPINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFR 425

Query: 2333 PPFRLCPQHARSKLTDDELTYLRKLARPLPTHFVLGRNRKLQGLAAAILKLWEKCHIAKI 2154
            PP RL P + R  LTDDEL YLRKL  PLP HF LG+NR LQGLAAAILKLWEK  IAKI
Sbjct: 426  PPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKSLIAKI 485

Query: 2153 AVKWGSLNTNNEQMAYELKCLTGGVLLLRNKFFIILYRGKDFLPPKVANIVAEREMELKR 1974
            A+KWG  NT+NEQMAYELK LTGGVLL+RNKF +ILYRGKDFLP  VAN+V EREM L+R
Sbjct: 486  AIKWGIQNTDNEQMAYELKNLTGGVLLVRNKFLLILYRGKDFLPQGVANLVVEREMALRR 545

Query: 1973 CQLQEEALRLKAIETFYATDEASVNTGTAGTLSEFQDIRSECGDLKNENREHELKLEAEK 1794
            CQL EE  R+K  ET    DE    T T GTLSEF+DI++  GDLK E+ E EL+LEA+K
Sbjct: 546  CQLNEEGARVKVAETCQVADEPLAKTSTVGTLSEFEDIQTRFGDLKKESSELELQLEAQK 605

Query: 1793 ERLVKELRNQERKLSILKSKIERSAKELLKLNSAWRPSEQEADQEMITEEERECFRKIGL 1614
            E L +ELRNQERKLSIL  KIE+SAKEL KL S+ +P+EQ+ D E+ITEEEREC RKIGL
Sbjct: 606  ENLERELRNQERKLSILNIKIEKSAKELAKLKSSRQPAEQDVDLEIITEEERECLRKIGL 665

Query: 1613 KMDSSLVLGRRGVFDGVIEGLHQHWKHREIVKVITMQRMLSQVIYTAKMLEAESGGILVS 1434
            K++S LVLGRRGVF+GVIEG++QHWKHRE+VKVITMQR+ ++VIYTAK L AE+GGILVS
Sbjct: 666  KLNSFLVLGRRGVFNGVIEGVYQHWKHREVVKVITMQRVFARVIYTAKFLVAETGGILVS 725

Query: 1433 VVKMKEGHAIIIYRGKNYRRPPKSVPQNLLTKREALNRSLEMQRIGSLKFFAHQRQQAIS 1254
            V K+KEGHA+IIYRGKNYRRP K +  NLLTKREAL +S+E+QRIGSLKFFA+QR+QAI 
Sbjct: 726  VEKLKEGHALIIYRGKNYRRPLKLMTNNLLTKREALRQSIELQRIGSLKFFAYQRRQAIL 785

Query: 1253 DLKLKL 1236
            DLKLKL
Sbjct: 786  DLKLKL 791