BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00006255
         (819 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Tritic...    69   5e-09

>gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Triticum urartu]
          Length = 430

 Score = 68.6 bits (166), Expect = 5e-09
 Identities = 45/105 (42%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
 Frame = +1

Query: 34  EFL*IHPPKEPDMIIFHHPARARIKRTKWIHIKSIC*KIYMLSISTHI*YMNGSM*EKNF 213
           E   IHPPKEPDM I+HHPARAR+K    I  + I  +I + + S        ++ +K+F
Sbjct: 335 ELFRIHPPKEPDMRIYHHPARARVKE---IRPRKILNRIKVYNDSM-------TLGKKSF 384

Query: 214 TGFPFP--DLQLSIAKN*VLTGKYSIPK*AYKVDRNLIKCFLGRL 342
             F FP   LQL I  N +L GK SI K AYK D + + C L  +
Sbjct: 385 IRFSFPKLHLQLLIENNPILMGKCSISKWAYKFDHDQLLCGLSHV 429