BLASTX nr result
ID: Cornus23_contig00005673
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cornus23_contig00005673
(420 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007030223.1| RNA-binding family protein isoform 6 [Theobr... 83 9e-14
ref|XP_007030221.1| RNA-binding family protein isoform 4 [Theobr... 83 9e-14
ref|XP_007030218.1| RNA-binding family protein isoform 1 [Theobr... 83 9e-14
gb|KHF98520.1| RNA-binding 40 [Gossypium arboreum] 77 4e-12
gb|KJB44707.1| hypothetical protein B456_007G267600 [Gossypium r... 72 2e-10
ref|XP_012492649.1| PREDICTED: U11/U12 small nuclear ribonucleop... 72 2e-10
ref|XP_011034421.1| PREDICTED: U11/U12 small nuclear ribonucleop... 71 3e-10
ref|XP_002319145.2| hypothetical protein POPTR_0013s05120g [Popu... 71 4e-10
ref|XP_006853102.2| PREDICTED: U11/U12 small nuclear ribonucleop... 68 2e-09
gb|ERN14569.1| hypothetical protein AMTR_s00038p00125360 [Ambore... 68 2e-09
ref|XP_009417857.1| PREDICTED: U11/U12 small nuclear ribonucleop... 67 4e-09
ref|XP_010054356.1| PREDICTED: U11/U12 small nuclear ribonucleop... 67 4e-09
ref|XP_002325403.2| RNA recognition motif-containing family prot... 67 4e-09
ref|XP_010257747.1| PREDICTED: U11/U12 small nuclear ribonucleop... 66 1e-08
ref|XP_010650296.1| PREDICTED: U11/U12 small nuclear ribonucleop... 65 2e-08
ref|XP_010650295.1| PREDICTED: U11/U12 small nuclear ribonucleop... 65 2e-08
ref|XP_002270244.2| PREDICTED: U11/U12 small nuclear ribonucleop... 65 2e-08
ref|XP_010088485.1| RNA-binding protein 40 [Morus notabilis] gi|... 65 3e-08
ref|XP_012092704.1| PREDICTED: U11/U12 small nuclear ribonucleop... 65 3e-08
ref|XP_012092703.1| PREDICTED: U11/U12 small nuclear ribonucleop... 65 3e-08
>ref|XP_007030223.1| RNA-binding family protein isoform 6 [Theobroma cacao]
gi|508718828|gb|EOY10725.1| RNA-binding family protein
isoform 6 [Theobroma cacao]
Length = 436
Score = 82.8 bits (203), Expect = 9e-14
Identities = 44/70 (62%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPE-DASATLLIRHLPEAVPYDTLSRLFSH 32
MA VP SQP N M + F YQGV S P E ++ TLLIRHLPEA+P+DTL RLFSH
Sbjct: 1 MAAVPSSQPFSNPQMQH-FGYQGVEGTTSNPHELESVTTLLIRHLPEAIPHDTLLRLFSH 59
Query: 31 YGASSLRPCA 2
YGASS+RPC+
Sbjct: 60 YGASSVRPCS 69
>ref|XP_007030221.1| RNA-binding family protein isoform 4 [Theobroma cacao]
gi|508718826|gb|EOY10723.1| RNA-binding family protein
isoform 4 [Theobroma cacao]
Length = 487
Score = 82.8 bits (203), Expect = 9e-14
Identities = 44/70 (62%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPE-DASATLLIRHLPEAVPYDTLSRLFSH 32
MA VP SQP N M + F YQGV S P E ++ TLLIRHLPEA+P+DTL RLFSH
Sbjct: 1 MAAVPSSQPFSNPQMQH-FGYQGVEGTTSNPHELESVTTLLIRHLPEAIPHDTLLRLFSH 59
Query: 31 YGASSLRPCA 2
YGASS+RPC+
Sbjct: 60 YGASSVRPCS 69
>ref|XP_007030218.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590641397|ref|XP_007030219.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|590641400|ref|XP_007030220.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508718823|gb|EOY10720.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508718824|gb|EOY10721.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508718825|gb|EOY10722.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 479
Score = 82.8 bits (203), Expect = 9e-14
Identities = 44/70 (62%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPE-DASATLLIRHLPEAVPYDTLSRLFSH 32
MA VP SQP N M + F YQGV S P E ++ TLLIRHLPEA+P+DTL RLFSH
Sbjct: 1 MAAVPSSQPFSNPQMQH-FGYQGVEGTTSNPHELESVTTLLIRHLPEAIPHDTLLRLFSH 59
Query: 31 YGASSLRPCA 2
YGASS+RPC+
Sbjct: 60 YGASSVRPCS 69
>gb|KHF98520.1| RNA-binding 40 [Gossypium arboreum]
Length = 464
Score = 77.4 bits (189), Expect = 4e-12
Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKP-PEDASATLLIRHLPEAVPYDTLSRLFSH 32
MA +P SQP +S F YQGV S P D+ ATLLIRHLPEA+P +TL RLFSH
Sbjct: 1 MAAIPSSQPF-SSPQIQQFGYQGVEGATSNPLGADSVATLLIRHLPEAIPPETLLRLFSH 59
Query: 31 YGASSLRPCA 2
YGASS+RPC+
Sbjct: 60 YGASSVRPCS 69
>gb|KJB44707.1| hypothetical protein B456_007G267600 [Gossypium raimondii]
Length = 478
Score = 72.0 bits (175), Expect = 2e-10
Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKP-PEDASATLLIRHLPEAVPYDTLSRLFSH 32
MA +P SQP +S F YQGV S P D+ ATLLIRHLPEA+P +TL RLFSH
Sbjct: 1 MAAIPSSQPF-SSPQMQQFGYQGVEGATSNPIGADSVATLLIRHLPEAIPPETLLRLFSH 59
Query: 31 YGASSLRP 8
YGASS++P
Sbjct: 60 YGASSVQP 67
>ref|XP_012492649.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
[Gossypium raimondii] gi|823195528|ref|XP_012492650.1|
PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
kDa protein [Gossypium raimondii]
gi|823195531|ref|XP_012492651.1| PREDICTED: U11/U12
small nuclear ribonucleoprotein 65 kDa protein
[Gossypium raimondii] gi|763777580|gb|KJB44703.1|
hypothetical protein B456_007G267600 [Gossypium
raimondii] gi|763777581|gb|KJB44704.1| hypothetical
protein B456_007G267600 [Gossypium raimondii]
gi|763777585|gb|KJB44708.1| hypothetical protein
B456_007G267600 [Gossypium raimondii]
Length = 479
Score = 72.0 bits (175), Expect = 2e-10
Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKP-PEDASATLLIRHLPEAVPYDTLSRLFSH 32
MA +P SQP +S F YQGV S P D+ ATLLIRHLPEA+P +TL RLFSH
Sbjct: 1 MAAIPSSQPF-SSPQMQQFGYQGVEGATSNPIGADSVATLLIRHLPEAIPPETLLRLFSH 59
Query: 31 YGASSLRP 8
YGASS++P
Sbjct: 60 YGASSVQP 67
>ref|XP_011034421.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa
protein-like [Populus euphratica]
Length = 479
Score = 71.2 bits (173), Expect = 3e-10
Identities = 36/68 (52%), Positives = 43/68 (63%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHY 29
MA P +Q N+ M NF +QG A TLLI+HLPE +P+DTLSRLFSHY
Sbjct: 1 MAAFPSAQNFTNTHMQ-NFGFQGTEVKAESVDSQVIVTLLIKHLPEDIPFDTLSRLFSHY 59
Query: 28 GASSLRPC 5
GA S+RPC
Sbjct: 60 GACSVRPC 67
>ref|XP_002319145.2| hypothetical protein POPTR_0013s05120g [Populus trichocarpa]
gi|550325000|gb|EEE95068.2| hypothetical protein
POPTR_0013s05120g [Populus trichocarpa]
Length = 479
Score = 70.9 bits (172), Expect = 4e-10
Identities = 36/68 (52%), Positives = 43/68 (63%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHY 29
MA P +Q N+ M NF +QG A TLLI+HLPE +P+DTLSRLFSHY
Sbjct: 1 MAAFPSAQNFTNTQMQ-NFGFQGTEVKAESVESQVIVTLLIKHLPEDIPFDTLSRLFSHY 59
Query: 28 GASSLRPC 5
GA S+RPC
Sbjct: 60 GAFSVRPC 67
>ref|XP_006853102.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
[Amborella trichopoda]
Length = 476
Score = 68.2 bits (165), Expect = 2e-09
Identities = 29/37 (78%), Positives = 36/37 (97%)
Frame = -3
Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
E+ +ATLL+RHLPEA+P++TLSRLFSHYGASS+RPCA
Sbjct: 27 EEKTATLLVRHLPEAIPHETLSRLFSHYGASSVRPCA 63
>gb|ERN14569.1| hypothetical protein AMTR_s00038p00125360 [Amborella trichopoda]
Length = 471
Score = 68.2 bits (165), Expect = 2e-09
Identities = 29/37 (78%), Positives = 36/37 (97%)
Frame = -3
Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
E+ +ATLL+RHLPEA+P++TLSRLFSHYGASS+RPCA
Sbjct: 22 EEKTATLLVRHLPEAIPHETLSRLFSHYGASSVRPCA 58
>ref|XP_009417857.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
[Musa acuminata subsp. malaccensis]
gi|695059036|ref|XP_009417858.1| PREDICTED: U11/U12
small nuclear ribonucleoprotein 65 kDa protein [Musa
acuminata subsp. malaccensis]
Length = 469
Score = 67.4 bits (163), Expect = 4e-09
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 15/60 (25%)
Frame = -3
Query: 136 PEMASKPPED---------------ASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
P MA PP + A+ATLL+RHLPEA+P+D LSRLFSHYGASS+RPCA
Sbjct: 17 PRMAPPPPPNSVPAAEGSSGGAGVAAAATLLVRHLPEAMPFDVLSRLFSHYGASSVRPCA 76
>ref|XP_010054356.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
[Eucalyptus grandis] gi|702246074|ref|XP_010054361.1|
PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
kDa protein [Eucalyptus grandis]
gi|702246079|ref|XP_010054369.1| PREDICTED: U11/U12
small nuclear ribonucleoprotein 65 kDa protein
[Eucalyptus grandis] gi|702246087|ref|XP_010054374.1|
PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
kDa protein [Eucalyptus grandis]
gi|702246093|ref|XP_010054378.1| PREDICTED: U11/U12
small nuclear ribonucleoprotein 65 kDa protein
[Eucalyptus grandis] gi|629125412|gb|KCW89837.1|
hypothetical protein EUGRSUZ_A02076 [Eucalyptus grandis]
Length = 485
Score = 67.4 bits (163), Expect = 4e-09
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEY-----QGVPEMASKPPEDASATLLIRHLPEAVPYDTLSR 44
M G+P SQ N +++ + QG+P ++ P D+ TLLIRHLPEA+P +TLSR
Sbjct: 1 MDGIPSSQASFN---VFSYPHGLRHGQGLP--SNSLPVDSPVTLLIRHLPEAIPQETLSR 55
Query: 43 LFSHYGASSLRPC 5
L SHYGAS++RPC
Sbjct: 56 LLSHYGASTVRPC 68
>ref|XP_002325403.2| RNA recognition motif-containing family protein, partial [Populus
trichocarpa] gi|550316797|gb|EEE99784.2| RNA recognition
motif-containing family protein, partial [Populus
trichocarpa]
Length = 420
Score = 67.4 bits (163), Expect = 4e-09
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHY 29
M+ P Q L+N+ +F +QG A + TLLI+HLPEA+P+ TLSRLFSHY
Sbjct: 1 MSAFPSPQNLMNA-QLQDFGFQGNDLKAESVEPQVTVTLLIKHLPEAIPFKTLSRLFSHY 59
Query: 28 GASSLRPC 5
GA S+RPC
Sbjct: 60 GAVSVRPC 67
>ref|XP_010257747.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa
protein-like [Nelumbo nucifera]
gi|720005730|ref|XP_010257748.1| PREDICTED: U11/U12
small nuclear ribonucleoprotein 65 kDa protein-like
[Nelumbo nucifera] gi|720005733|ref|XP_010257749.1|
PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
kDa protein-like [Nelumbo nucifera]
gi|720005736|ref|XP_010257750.1| PREDICTED: U11/U12
small nuclear ribonucleoprotein 65 kDa protein-like
[Nelumbo nucifera]
Length = 298
Score = 65.9 bits (159), Expect = 1e-08
Identities = 32/44 (72%), Positives = 36/44 (81%), Gaps = 2/44 (4%)
Frame = -3
Query: 127 ASKPPEDASA--TLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
A P ED S+ TLL+RHLPEA+P DTLSRLFSHYGA S+RPCA
Sbjct: 24 AKSPQEDESSVVTLLVRHLPEAIPPDTLSRLFSHYGAFSVRPCA 67
>ref|XP_010650296.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
isoform X3 [Vitis vinifera]
Length = 441
Score = 65.1 bits (157), Expect = 2e-08
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = -3
Query: 136 PEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPC 5
P S E ++ATLLIRHLPEA+P DTLSRLFS YGASS+RPC
Sbjct: 9 PRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPC 52
>ref|XP_010650295.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
isoform X2 [Vitis vinifera]
Length = 448
Score = 65.1 bits (157), Expect = 2e-08
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = -3
Query: 136 PEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPC 5
P S E ++ATLLIRHLPEA+P DTLSRLFS YGASS+RPC
Sbjct: 9 PRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPC 52
>ref|XP_002270244.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
isoform X1 [Vitis vinifera]
gi|731390245|ref|XP_010650294.1| PREDICTED: U11/U12
small nuclear ribonucleoprotein 65 kDa protein isoform
X1 [Vitis vinifera] gi|298205172|emb|CBI17231.3| unnamed
protein product [Vitis vinifera]
Length = 463
Score = 65.1 bits (157), Expect = 2e-08
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = -3
Query: 136 PEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPC 5
P S E ++ATLLIRHLPEA+P DTLSRLFS YGASS+RPC
Sbjct: 9 PRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPC 52
>ref|XP_010088485.1| RNA-binding protein 40 [Morus notabilis]
gi|587845714|gb|EXB36255.1| RNA-binding protein 40
[Morus notabilis]
Length = 486
Score = 64.7 bits (156), Expect = 3e-08
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = -3
Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPED---ASATLLIRHLPEAVPYDTLSRLF 38
MAGVPP + + + Q + +P A++TLLIRHLPEA+P TLSRLF
Sbjct: 1 MAGVPPMN---QNQLPIQSQQQQQHHLGLQPESQVRAAASTLLIRHLPEAIPEPTLSRLF 57
Query: 37 SHYGASSLRPC 5
SHYGASS+RPC
Sbjct: 58 SHYGASSVRPC 68
>ref|XP_012092704.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
isoform X2 [Jatropha curcas]
Length = 450
Score = 64.7 bits (156), Expect = 3e-08
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = -3
Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
E + TLLIRHLPEA+PY+TLSRLFSHYG+SS RPC+
Sbjct: 11 EATTITLLIRHLPEAIPYETLSRLFSHYGSSSFRPCS 47
>ref|XP_012092703.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
isoform X1 [Jatropha curcas]
Length = 459
Score = 64.7 bits (156), Expect = 3e-08
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = -3
Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
E + TLLIRHLPEA+PY+TLSRLFSHYG+SS RPC+
Sbjct: 11 EATTITLLIRHLPEAIPYETLSRLFSHYGSSSFRPCS 47