BLASTX nr result

ID: Cornus23_contig00005673 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00005673
         (420 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007030223.1| RNA-binding family protein isoform 6 [Theobr...    83   9e-14
ref|XP_007030221.1| RNA-binding family protein isoform 4 [Theobr...    83   9e-14
ref|XP_007030218.1| RNA-binding family protein isoform 1 [Theobr...    83   9e-14
gb|KHF98520.1| RNA-binding 40 [Gossypium arboreum]                     77   4e-12
gb|KJB44707.1| hypothetical protein B456_007G267600 [Gossypium r...    72   2e-10
ref|XP_012492649.1| PREDICTED: U11/U12 small nuclear ribonucleop...    72   2e-10
ref|XP_011034421.1| PREDICTED: U11/U12 small nuclear ribonucleop...    71   3e-10
ref|XP_002319145.2| hypothetical protein POPTR_0013s05120g [Popu...    71   4e-10
ref|XP_006853102.2| PREDICTED: U11/U12 small nuclear ribonucleop...    68   2e-09
gb|ERN14569.1| hypothetical protein AMTR_s00038p00125360 [Ambore...    68   2e-09
ref|XP_009417857.1| PREDICTED: U11/U12 small nuclear ribonucleop...    67   4e-09
ref|XP_010054356.1| PREDICTED: U11/U12 small nuclear ribonucleop...    67   4e-09
ref|XP_002325403.2| RNA recognition motif-containing family prot...    67   4e-09
ref|XP_010257747.1| PREDICTED: U11/U12 small nuclear ribonucleop...    66   1e-08
ref|XP_010650296.1| PREDICTED: U11/U12 small nuclear ribonucleop...    65   2e-08
ref|XP_010650295.1| PREDICTED: U11/U12 small nuclear ribonucleop...    65   2e-08
ref|XP_002270244.2| PREDICTED: U11/U12 small nuclear ribonucleop...    65   2e-08
ref|XP_010088485.1| RNA-binding protein 40 [Morus notabilis] gi|...    65   3e-08
ref|XP_012092704.1| PREDICTED: U11/U12 small nuclear ribonucleop...    65   3e-08
ref|XP_012092703.1| PREDICTED: U11/U12 small nuclear ribonucleop...    65   3e-08

>ref|XP_007030223.1| RNA-binding family protein isoform 6 [Theobroma cacao]
           gi|508718828|gb|EOY10725.1| RNA-binding family protein
           isoform 6 [Theobroma cacao]
          Length = 436

 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 44/70 (62%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPE-DASATLLIRHLPEAVPYDTLSRLFSH 32
           MA VP SQP  N  M + F YQGV    S P E ++  TLLIRHLPEA+P+DTL RLFSH
Sbjct: 1   MAAVPSSQPFSNPQMQH-FGYQGVEGTTSNPHELESVTTLLIRHLPEAIPHDTLLRLFSH 59

Query: 31  YGASSLRPCA 2
           YGASS+RPC+
Sbjct: 60  YGASSVRPCS 69


>ref|XP_007030221.1| RNA-binding family protein isoform 4 [Theobroma cacao]
           gi|508718826|gb|EOY10723.1| RNA-binding family protein
           isoform 4 [Theobroma cacao]
          Length = 487

 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 44/70 (62%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPE-DASATLLIRHLPEAVPYDTLSRLFSH 32
           MA VP SQP  N  M + F YQGV    S P E ++  TLLIRHLPEA+P+DTL RLFSH
Sbjct: 1   MAAVPSSQPFSNPQMQH-FGYQGVEGTTSNPHELESVTTLLIRHLPEAIPHDTLLRLFSH 59

Query: 31  YGASSLRPCA 2
           YGASS+RPC+
Sbjct: 60  YGASSVRPCS 69


>ref|XP_007030218.1| RNA-binding family protein isoform 1 [Theobroma cacao]
           gi|590641397|ref|XP_007030219.1| RNA-binding family
           protein isoform 1 [Theobroma cacao]
           gi|590641400|ref|XP_007030220.1| RNA-binding family
           protein isoform 1 [Theobroma cacao]
           gi|508718823|gb|EOY10720.1| RNA-binding family protein
           isoform 1 [Theobroma cacao] gi|508718824|gb|EOY10721.1|
           RNA-binding family protein isoform 1 [Theobroma cacao]
           gi|508718825|gb|EOY10722.1| RNA-binding family protein
           isoform 1 [Theobroma cacao]
          Length = 479

 Score = 82.8 bits (203), Expect = 9e-14
 Identities = 44/70 (62%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPE-DASATLLIRHLPEAVPYDTLSRLFSH 32
           MA VP SQP  N  M + F YQGV    S P E ++  TLLIRHLPEA+P+DTL RLFSH
Sbjct: 1   MAAVPSSQPFSNPQMQH-FGYQGVEGTTSNPHELESVTTLLIRHLPEAIPHDTLLRLFSH 59

Query: 31  YGASSLRPCA 2
           YGASS+RPC+
Sbjct: 60  YGASSVRPCS 69


>gb|KHF98520.1| RNA-binding 40 [Gossypium arboreum]
          Length = 464

 Score = 77.4 bits (189), Expect = 4e-12
 Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKP-PEDASATLLIRHLPEAVPYDTLSRLFSH 32
           MA +P SQP  +S     F YQGV    S P   D+ ATLLIRHLPEA+P +TL RLFSH
Sbjct: 1   MAAIPSSQPF-SSPQIQQFGYQGVEGATSNPLGADSVATLLIRHLPEAIPPETLLRLFSH 59

Query: 31  YGASSLRPCA 2
           YGASS+RPC+
Sbjct: 60  YGASSVRPCS 69


>gb|KJB44707.1| hypothetical protein B456_007G267600 [Gossypium raimondii]
          Length = 478

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKP-PEDASATLLIRHLPEAVPYDTLSRLFSH 32
           MA +P SQP  +S     F YQGV    S P   D+ ATLLIRHLPEA+P +TL RLFSH
Sbjct: 1   MAAIPSSQPF-SSPQMQQFGYQGVEGATSNPIGADSVATLLIRHLPEAIPPETLLRLFSH 59

Query: 31  YGASSLRP 8
           YGASS++P
Sbjct: 60  YGASSVQP 67


>ref|XP_012492649.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           [Gossypium raimondii] gi|823195528|ref|XP_012492650.1|
           PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
           kDa protein [Gossypium raimondii]
           gi|823195531|ref|XP_012492651.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 65 kDa protein
           [Gossypium raimondii] gi|763777580|gb|KJB44703.1|
           hypothetical protein B456_007G267600 [Gossypium
           raimondii] gi|763777581|gb|KJB44704.1| hypothetical
           protein B456_007G267600 [Gossypium raimondii]
           gi|763777585|gb|KJB44708.1| hypothetical protein
           B456_007G267600 [Gossypium raimondii]
          Length = 479

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKP-PEDASATLLIRHLPEAVPYDTLSRLFSH 32
           MA +P SQP  +S     F YQGV    S P   D+ ATLLIRHLPEA+P +TL RLFSH
Sbjct: 1   MAAIPSSQPF-SSPQMQQFGYQGVEGATSNPIGADSVATLLIRHLPEAIPPETLLRLFSH 59

Query: 31  YGASSLRP 8
           YGASS++P
Sbjct: 60  YGASSVQP 67


>ref|XP_011034421.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa
           protein-like [Populus euphratica]
          Length = 479

 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 36/68 (52%), Positives = 43/68 (63%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHY 29
           MA  P +Q   N+ M  NF +QG    A         TLLI+HLPE +P+DTLSRLFSHY
Sbjct: 1   MAAFPSAQNFTNTHMQ-NFGFQGTEVKAESVDSQVIVTLLIKHLPEDIPFDTLSRLFSHY 59

Query: 28  GASSLRPC 5
           GA S+RPC
Sbjct: 60  GACSVRPC 67


>ref|XP_002319145.2| hypothetical protein POPTR_0013s05120g [Populus trichocarpa]
           gi|550325000|gb|EEE95068.2| hypothetical protein
           POPTR_0013s05120g [Populus trichocarpa]
          Length = 479

 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 36/68 (52%), Positives = 43/68 (63%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHY 29
           MA  P +Q   N+ M  NF +QG    A         TLLI+HLPE +P+DTLSRLFSHY
Sbjct: 1   MAAFPSAQNFTNTQMQ-NFGFQGTEVKAESVESQVIVTLLIKHLPEDIPFDTLSRLFSHY 59

Query: 28  GASSLRPC 5
           GA S+RPC
Sbjct: 60  GAFSVRPC 67


>ref|XP_006853102.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           [Amborella trichopoda]
          Length = 476

 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 29/37 (78%), Positives = 36/37 (97%)
 Frame = -3

Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
           E+ +ATLL+RHLPEA+P++TLSRLFSHYGASS+RPCA
Sbjct: 27  EEKTATLLVRHLPEAIPHETLSRLFSHYGASSVRPCA 63


>gb|ERN14569.1| hypothetical protein AMTR_s00038p00125360 [Amborella trichopoda]
          Length = 471

 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 29/37 (78%), Positives = 36/37 (97%)
 Frame = -3

Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
           E+ +ATLL+RHLPEA+P++TLSRLFSHYGASS+RPCA
Sbjct: 22  EEKTATLLVRHLPEAIPHETLSRLFSHYGASSVRPCA 58


>ref|XP_009417857.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           [Musa acuminata subsp. malaccensis]
           gi|695059036|ref|XP_009417858.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 65 kDa protein [Musa
           acuminata subsp. malaccensis]
          Length = 469

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 15/60 (25%)
 Frame = -3

Query: 136 PEMASKPPED---------------ASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
           P MA  PP +               A+ATLL+RHLPEA+P+D LSRLFSHYGASS+RPCA
Sbjct: 17  PRMAPPPPPNSVPAAEGSSGGAGVAAAATLLVRHLPEAMPFDVLSRLFSHYGASSVRPCA 76


>ref|XP_010054356.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           [Eucalyptus grandis] gi|702246074|ref|XP_010054361.1|
           PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
           kDa protein [Eucalyptus grandis]
           gi|702246079|ref|XP_010054369.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 65 kDa protein
           [Eucalyptus grandis] gi|702246087|ref|XP_010054374.1|
           PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
           kDa protein [Eucalyptus grandis]
           gi|702246093|ref|XP_010054378.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 65 kDa protein
           [Eucalyptus grandis] gi|629125412|gb|KCW89837.1|
           hypothetical protein EUGRSUZ_A02076 [Eucalyptus grandis]
          Length = 485

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEY-----QGVPEMASKPPEDASATLLIRHLPEAVPYDTLSR 44
           M G+P SQ   N    +++ +     QG+P  ++  P D+  TLLIRHLPEA+P +TLSR
Sbjct: 1   MDGIPSSQASFN---VFSYPHGLRHGQGLP--SNSLPVDSPVTLLIRHLPEAIPQETLSR 55

Query: 43  LFSHYGASSLRPC 5
           L SHYGAS++RPC
Sbjct: 56  LLSHYGASTVRPC 68


>ref|XP_002325403.2| RNA recognition motif-containing family protein, partial [Populus
           trichocarpa] gi|550316797|gb|EEE99784.2| RNA recognition
           motif-containing family protein, partial [Populus
           trichocarpa]
          Length = 420

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 34/68 (50%), Positives = 44/68 (64%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHY 29
           M+  P  Q L+N+    +F +QG    A       + TLLI+HLPEA+P+ TLSRLFSHY
Sbjct: 1   MSAFPSPQNLMNA-QLQDFGFQGNDLKAESVEPQVTVTLLIKHLPEAIPFKTLSRLFSHY 59

Query: 28  GASSLRPC 5
           GA S+RPC
Sbjct: 60  GAVSVRPC 67


>ref|XP_010257747.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa
           protein-like [Nelumbo nucifera]
           gi|720005730|ref|XP_010257748.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 65 kDa protein-like
           [Nelumbo nucifera] gi|720005733|ref|XP_010257749.1|
           PREDICTED: U11/U12 small nuclear ribonucleoprotein 65
           kDa protein-like [Nelumbo nucifera]
           gi|720005736|ref|XP_010257750.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 65 kDa protein-like
           [Nelumbo nucifera]
          Length = 298

 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 32/44 (72%), Positives = 36/44 (81%), Gaps = 2/44 (4%)
 Frame = -3

Query: 127 ASKPPEDASA--TLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
           A  P ED S+  TLL+RHLPEA+P DTLSRLFSHYGA S+RPCA
Sbjct: 24  AKSPQEDESSVVTLLVRHLPEAIPPDTLSRLFSHYGAFSVRPCA 67


>ref|XP_010650296.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           isoform X3 [Vitis vinifera]
          Length = 441

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = -3

Query: 136 PEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPC 5
           P   S   E ++ATLLIRHLPEA+P DTLSRLFS YGASS+RPC
Sbjct: 9   PRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPC 52


>ref|XP_010650295.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           isoform X2 [Vitis vinifera]
          Length = 448

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = -3

Query: 136 PEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPC 5
           P   S   E ++ATLLIRHLPEA+P DTLSRLFS YGASS+RPC
Sbjct: 9   PRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPC 52


>ref|XP_002270244.2| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           isoform X1 [Vitis vinifera]
           gi|731390245|ref|XP_010650294.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 65 kDa protein isoform
           X1 [Vitis vinifera] gi|298205172|emb|CBI17231.3| unnamed
           protein product [Vitis vinifera]
          Length = 463

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = -3

Query: 136 PEMASKPPEDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPC 5
           P   S   E ++ATLLIRHLPEA+P DTLSRLFS YGASS+RPC
Sbjct: 9   PRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPC 52


>ref|XP_010088485.1| RNA-binding protein 40 [Morus notabilis]
           gi|587845714|gb|EXB36255.1| RNA-binding protein 40
           [Morus notabilis]
          Length = 486

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
 Frame = -3

Query: 208 MAGVPPSQPLINS*MTYNFEYQGVPEMASKPPED---ASATLLIRHLPEAVPYDTLSRLF 38
           MAGVPP      + +    + Q    +  +P      A++TLLIRHLPEA+P  TLSRLF
Sbjct: 1   MAGVPPMN---QNQLPIQSQQQQQHHLGLQPESQVRAAASTLLIRHLPEAIPEPTLSRLF 57

Query: 37  SHYGASSLRPC 5
           SHYGASS+RPC
Sbjct: 58  SHYGASSVRPC 68


>ref|XP_012092704.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           isoform X2 [Jatropha curcas]
          Length = 450

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = -3

Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
           E  + TLLIRHLPEA+PY+TLSRLFSHYG+SS RPC+
Sbjct: 11  EATTITLLIRHLPEAIPYETLSRLFSHYGSSSFRPCS 47


>ref|XP_012092703.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
           isoform X1 [Jatropha curcas]
          Length = 459

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = -3

Query: 112 EDASATLLIRHLPEAVPYDTLSRLFSHYGASSLRPCA 2
           E  + TLLIRHLPEA+PY+TLSRLFSHYG+SS RPC+
Sbjct: 11  EATTITLLIRHLPEAIPYETLSRLFSHYGSSSFRPCS 47


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