BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00003066
         (2601 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278075.3| PREDICTED: RNA polymerase II-associated fact...   722   0.0  
ref|XP_010256861.1| PREDICTED: RNA polymerase II-associated fact...   693   0.0  
ref|XP_006343037.1| PREDICTED: RNA polymerase II-associated fact...   685   0.0  
emb|CDO97975.1| unnamed protein product [Coffea canephora]            672   0.0  
ref|XP_007217663.1| hypothetical protein PRUPE_ppa002145mg [Prun...   670   0.0  
ref|XP_004235642.1| PREDICTED: RNA polymerase II-associated fact...   667   0.0  
ref|XP_008348493.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   645   0.0  
ref|XP_009353546.1| PREDICTED: RNA polymerase II-associated fact...   644   0.0  
ref|XP_010098144.1| hypothetical protein L484_026278 [Morus nota...   642   0.0  
ref|XP_008222683.1| PREDICTED: RNA polymerase II-associated fact...   641   0.0  
ref|XP_008367453.1| PREDICTED: RNA polymerase II-associated fact...   640   e-180
ref|XP_009342534.1| PREDICTED: RNA polymerase II-associated fact...   639   e-180
ref|XP_009786773.1| PREDICTED: RNA polymerase II-associated fact...   638   e-180
ref|XP_009608739.1| PREDICTED: RNA polymerase II-associated fact...   634   e-178
ref|XP_004302858.1| PREDICTED: RNA polymerase II-associated fact...   632   e-178
ref|XP_011080439.1| PREDICTED: RNA polymerase II-associated fact...   629   e-177
ref|XP_008462415.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   629   e-177
ref|XP_008228451.1| PREDICTED: bromodomain-containing protein 4 ...   625   e-176
ref|XP_004141783.1| PREDICTED: RNA polymerase II-associated fact...   621   e-174
ref|XP_006465692.1| PREDICTED: RNA polymerase II-associated fact...   619   e-174

>ref|XP_002278075.3| PREDICTED: RNA polymerase II-associated factor 1 homolog [Vitis
            vinifera]
          Length = 702

 Score =  722 bits (1863), Expect = 0.0
 Identities = 410/739 (55%), Positives = 467/739 (63%), Gaps = 11/739 (1%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQ---ANQYSQNWGYSGGDGSSFSHNY 2148
            MASYRP PP  QS+F                        NQY QNWGY            
Sbjct: 1    MASYRPFPP--QSSFPPPPNQNPVPQQPPPQPHPPQQRGNQYPQNWGY------------ 46

Query: 2147 NQTHPNSSFQHGGYGTS--SSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1974
                PNS++ HGGYG+S  SSQHYG                                   
Sbjct: 47   ----PNSNYHHGGYGSSASSSQHYGGPSRTQHPPPPPHQQQQYPYPPPPLDSTYPPPPPP 102

Query: 1973 XXXXXXXXXXXXXSMNLQPQPASAPMYYPSSQYSQFNHQLLQXXXXXXXXXXXXXXXXXX 1794
                              PQP   PMYYPSSQYSQF+HQ +Q                  
Sbjct: 103  PAS--------------MPQPPQGPMYYPSSQYSQFSHQPMQPPPPPPPSSPPPSSLIPP 148

Query: 1793 XXXXXXXXXXXXXXXPTVGQNKESRPDG-----EKGVPKDVTGSRWREPGHSNQGALRKQ 1629
                           P  GQNKE  PDG     +KG PKD+ G+  REPGHSNQG   KQ
Sbjct: 149  PPPPASPPPPPSSVPPQ-GQNKEPAPDGGSHGRDKGAPKDLRGAGRREPGHSNQGPSGKQ 207

Query: 1628 HKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQM 1449
             KPPVP  P KK+NGP GR+ET                          ESQNTVLQKTQM
Sbjct: 208  QKPPVPPAPVKKSNGPPGRVETEEERRLRKKREFEKQRQEEKQKHQLKESQNTVLQKTQM 267

Query: 1448 ISSGMKGHVSI-SGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKL 1272
            +SSG KGH S+  GS MGERRTT  LSG+RIENRL+KPTTFLCKLKFRNELPDPTAQPKL
Sbjct: 268  LSSG-KGHGSVVGGSRMGERRTTPFLSGDRIENRLRKPTTFLCKLKFRNELPDPTAQPKL 326

Query: 1271 LSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXX 1092
            ++L+ +KDR TKY++TSLEK+HKPQL+VE           LSVYNPP  +R         
Sbjct: 327  MALKTDKDRFTKYTITSLEKMHKPQLFVEPDLGIPLDLLDLSVYNPPSVRRPLDPEDEEL 386

Query: 1091 XXXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIK 912
                   VTP+K++GIK+KERPTDKGVSWLVKTQYIS LSTE+TKQSLTEKQAKELRE K
Sbjct: 387  LRDDES-VTPVKKEGIKKKERPTDKGVSWLVKTQYISPLSTESTKQSLTEKQAKELRETK 445

Query: 911  GGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIA 732
            GGRNILENFNSRERKIQ IEA+F A K  PVH+TN +L+PVEILPLLPDF RYDD FV+A
Sbjct: 446  GGRNILENFNSRERKIQNIEAAFAASKITPVHSTNKSLKPVEILPLLPDFARYDDSFVVA 505

Query: 731  AFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKD 552
            +FD+APTADSE YSKLDK+VRD+HESQAI+KS++ATGSD +KPEKFLAYMAPSPDELSKD
Sbjct: 506  SFDSAPTADSEIYSKLDKTVRDSHESQAILKSYMATGSDPSKPEKFLAYMAPSPDELSKD 565

Query: 551  MYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGK 372
            +YDE ED SYSW+REYHWDVRGDDADDPTTYLV+F +++ARY PLPTKL+LRKKRA EG+
Sbjct: 566  IYDENEDTSYSWVREYHWDVRGDDADDPTTYLVSFNKTDARYLPLPTKLLLRKKRAKEGR 625

Query: 371  SSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQKV 192
            SSDE+EH+                +ELK+   YS SK  + SSK R VD EDGLGR  K 
Sbjct: 626  SSDEVEHFPVPSKVTVRQRPNVAAIELKDEEVYSSSKRGVSSSK-RGVDMEDGLGRSYK- 683

Query: 191  VVEDQDMDQSSGAEYDSSD 135
             V+DQ MDQSSGAE + SD
Sbjct: 684  GVQDQHMDQSSGAEDEMSD 702


>ref|XP_010256861.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nelumbo
            nucifera] gi|720003043|ref|XP_010256862.1| PREDICTED: RNA
            polymerase II-associated factor 1 homolog [Nelumbo
            nucifera] gi|720003046|ref|XP_010256863.1| PREDICTED: RNA
            polymerase II-associated factor 1 homolog [Nelumbo
            nucifera]
          Length = 734

 Score =  693 bits (1788), Expect = 0.0
 Identities = 394/750 (52%), Positives = 448/750 (59%), Gaps = 22/750 (2%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGYSGGDGS-------SF 2160
            MAS+RP PP  QS+F                   +  QY QN G+SG  GS       S+
Sbjct: 1    MASFRPFPP--QSSF-----PPPNQNALPPPPQPRGTQYPQNRGFSGPPGSQPSVPSASY 53

Query: 2159 SHNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1980
              NYNQ HPNS+  HGGY  SSS HYG                                 
Sbjct: 54   PPNYNQIHPNSNIHHGGY-PSSSHHYGPSRPQQQPQQPPPHQQYPYQPPPPPPQSSYQPP 112

Query: 1979 XXXXXXXXXXXXXXXSMNLQPQPASAPMYYPSSQYSQFNHQLLQXXXXXXXXXXXXXXXX 1800
                            +N QPQP   PMYYPSSQYSQF+   +                 
Sbjct: 113  PPPPIPSSS-------INSQPQPPQPPMYYPSSQYSQFHPHSVPPPPMPPPPPPPPSSPP 165

Query: 1799 XXXXXXXXXXXXXXXXXPTV----------GQNKESRPDG-----EKGVPKDVTGSRWRE 1665
                             P             Q KES PDG     ++G PKD  G  WRE
Sbjct: 166  PNSSIPPPPPPLPPPSLPPPPPPPPSSAPPNQGKESGPDGHGHGHDRGGPKDANGVGWRE 225

Query: 1664 PGHSNQGALRKQHKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXX 1485
             GHS      KQ K     VP  K NGP+GR+ET                          
Sbjct: 226  AGHSRHAIPPKQQKASAAPVPPGKPNGPAGRVETEEERRLRKKREYEKQRQEEKHRQQLK 285

Query: 1484 ESQNTVLQKTQMISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRN 1305
            ESQNTVL KTQM+SSGMKGH SI GS MGERRTTT LSG+RIENRLKKPTTFLCKLKFRN
Sbjct: 286  ESQNTVLHKTQMLSSGMKGHGSIVGSRMGERRTTTFLSGDRIENRLKKPTTFLCKLKFRN 345

Query: 1304 ELPDPTAQPKLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKG 1125
            ELPDPTAQPKLL+L  +KDR TKY++TSLEK+HKP+L+VE           L+VYNPP  
Sbjct: 346  ELPDPTAQPKLLALNTDKDRYTKYAITSLEKMHKPKLFVEPDLGIPLDLLDLNVYNPPS- 404

Query: 1124 KRXXXXXXXXXXXXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLT 945
             R                +TP+K++GI+RKERPTDKGV+WLVKTQYIS LS +A KQSLT
Sbjct: 405  VRPPLAPEDEELLRDSESITPVKQEGIRRKERPTDKGVAWLVKTQYISPLSMDAAKQSLT 464

Query: 944  EKQAKELREIKGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPD 765
            EKQAKELRE +GG N+L N N+RE++IQ IE SFEACK  PVHATN NLQPVEILPLLPD
Sbjct: 465  EKQAKELRETRGGINLLANLNNREKQIQAIETSFEACKLPPVHATNPNLQPVEILPLLPD 524

Query: 764  FDRYDDQFVIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAY 585
            F+R DD+FV AAFD+ PTADSE YSKLD+S+RDA+ESQAIMKSF+A GSDS KPEKFLAY
Sbjct: 525  FERLDDRFVTAAFDSDPTADSEIYSKLDRSIRDAYESQAIMKSFIAGGSDSTKPEKFLAY 584

Query: 584  MAPSPDELSKDMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKL 405
            M PSPDEL KD+YDE ED+SYSW+REYHWDVRGDDADDPTTYLV F +  ARY PLPTKL
Sbjct: 585  MVPSPDELGKDVYDENEDVSYSWVREYHWDVRGDDADDPTTYLVTFDDEAARYLPLPTKL 644

Query: 404  ILRKKRAAEGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVD 225
            +LRKKRA EG+SSDEIEHY                +E++ESG Y   K  + SSKR R+ 
Sbjct: 645  VLRKKRAKEGRSSDEIEHYPIPSRVTVRCRPEVAVIEVQESGGYENFKAGISSSKRGRLT 704

Query: 224  TEDGLGRQQKVVVEDQDMDQSSGAEYDSSD 135
            T+DGL R  K      DMD SSGAE D SD
Sbjct: 705  TDDGLVRHNKGARVQDDMDHSSGAEDDMSD 734


>ref|XP_006343037.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Solanum
            tuberosum]
          Length = 700

 Score =  685 bits (1767), Expect = 0.0
 Identities = 391/736 (53%), Positives = 454/736 (61%), Gaps = 8/736 (1%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQA--NQYSQNWG-YSGGDGSSFSH-N 2151
            MASYRP PPP QS+FV                  Q+  +QYSQNWG Y   DGSS++  N
Sbjct: 1    MASYRPFPPPSQSSFVPPPPPPPPQNQNPPPPPSQSRGSQYSQNWGGYGVNDGSSYTQQN 60

Query: 2150 YNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1971
            Y+Q           + +S+ QH G                                    
Sbjct: 61   YSQV----------HQSSNYQHPGYVPPPPATRNQYPPPPPPPADSSYPPPPPPSG---- 106

Query: 1970 XXXXXXXXXXXXSMNLQPQPASAPMYYPSSQYSQFN-HQLLQXXXXXXXXXXXXXXXXXX 1794
                            QP P  APMYYPSSQYSQ++ +Q L+                  
Sbjct: 107  ----------------QPPPPPAPMYYPSSQYSQYSQNQPLEPPPPPPPPSSPPSSAIPP 150

Query: 1793 XXXXXXXXXXXXXXXPTVGQNK--ESRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKP 1620
                               Q++  ESRP  EK        S WRE GH N  A  KQ   
Sbjct: 151  PPPPSQPPSPPPPPSSVPSQDQRNESRPSAEKR-----RESGWRESGHGNHTARSKQPGH 205

Query: 1619 PVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISS 1440
             VP +P KK+N PSGR+ET                          ESQN VLQKTQM++S
Sbjct: 206  SVPPMPVKKSNAPSGRVETEEERRLRKKREIEKQRHEEKNRQHLKESQNKVLQKTQMLTS 265

Query: 1439 GMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLR 1260
            G KGH SIS S M +RRT  LLSGER ENRLKKPTTFLCKLKFRNELPDPTAQPKLL+LR
Sbjct: 266  GTKGHGSISASHMADRRTAPLLSGERTENRLKKPTTFLCKLKFRNELPDPTAQPKLLTLR 325

Query: 1259 REKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXX 1080
            R+ DR TKYS+TSLEK+HKPQLYVE           LSVYNPPKG +             
Sbjct: 326  RDPDRFTKYSITSLEKMHKPQLYVEPDLGIPLDLLDLSVYNPPKGVKIPLAPEDEELLRD 385

Query: 1079 XXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRN 900
              P+TPIK+DGIK+KERPTDKGVSWLVKTQYIS LSTE+ KQSLTEKQAKELRE KGGRN
Sbjct: 386  DNPITPIKKDGIKKKERPTDKGVSWLVKTQYISPLSTESAKQSLTEKQAKELRETKGGRN 445

Query: 899  ILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDN 720
            ILEN N R+R+IQ+IEASFEACKS+P+HATN  LQPV++ PL PDFDRY D FV+A +D+
Sbjct: 446  ILENLNKRDRQIQEIEASFEACKSRPIHATNRRLQPVKVQPLYPDFDRYKDPFVLANYDS 505

Query: 719  APTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDE 540
            APTADSETY+KLDK+VRDA ESQA+MKSFVAT SD+ KP+KFLAYM P+P+ELSKDMYDE
Sbjct: 506  APTADSETYNKLDKTVRDACESQAVMKSFVATSSDADKPDKFLAYMVPAPNELSKDMYDE 565

Query: 539  REDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDE 360
             EDISYSW+REYHWDVRGDDADDP TY+VAFGE+EARY PLPTKL+LRKKRA EGKS++E
Sbjct: 566  NEDISYSWVREYHWDVRGDDADDPNTYVVAFGETEARYMPLPTKLVLRKKRAREGKSNEE 625

Query: 359  IEHYXXXXXXXXXXXXXXXXVELKESGSYSGS-KGDMLSSKRRRVDTEDGLGRQQKVVVE 183
            +EH+                +ELKE G Y+ + KG++ SSKR R+  ED +G Q    + 
Sbjct: 626  VEHFPVPSRVTVRKRPTAAAIELKEEGGYTTALKGNVSSSKRSRISHEDDVGEQHN-NMH 684

Query: 182  DQDMDQSSGAEYDSSD 135
            D D DQSSG EY  SD
Sbjct: 685  DDDQDQSSGGEYYMSD 700


>emb|CDO97975.1| unnamed protein product [Coffea canephora]
          Length = 706

 Score =  672 bits (1735), Expect = 0.0
 Identities = 364/605 (60%), Positives = 418/605 (69%), Gaps = 7/605 (1%)
 Frame = -2

Query: 1928 NLQPQPASAPM---YYPSSQYSQFNH----QLLQXXXXXXXXXXXXXXXXXXXXXXXXXX 1770
            +L PQP  AP    YYPS QYSQ++     Q LQ                          
Sbjct: 112  SLPPQPGPAPPAPGYYPSGQYSQYSQHQPLQPLQPPPPPPPPSSPPPNSVAPPPPPPPLS 171

Query: 1769 XXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKPPVPLVPAKKT 1590
                      GQ+KE+R   E+   ++   S WR+ G++      KQ K PVP VPA+K 
Sbjct: 172  PPPLPSSLPPGQSKENRNAEERRPSREGRDSGWRDLGNA------KQQKVPVPQVPARKP 225

Query: 1589 NGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISSGMKGHVSISG 1410
            +GP GR+ET                          ESQ+ VLQKTQMISSG K H SI+G
Sbjct: 226  SGPPGRVETEEERRLRKKREYEKQRQEEKHRQHIKESQSRVLQKTQMISSGTKAHGSITG 285

Query: 1409 SCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRREKDRLTKYS 1230
            S +G+RRT  LLSGERIENRLKKPTTFLCKLKFRNELPD TAQPKL SLRR+KDR TKY+
Sbjct: 286  SHIGDRRTAPLLSGERIENRLKKPTTFLCKLKFRNELPDQTAQPKLTSLRRDKDRFTKYA 345

Query: 1229 VTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXXXXPVTPIKRD 1050
            +TSLEK+HKP+LYVE           LSVYNPPKG+                PVTPIK+D
Sbjct: 346  ITSLEKMHKPELYVEPDLGIPLDLLDLSVYNPPKGRSLQLDPEDEELLRDDDPVTPIKKD 405

Query: 1049 GIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRNILENFNSRER 870
            GIKRKERPTD+GVSWLVKTQYIS LS E++KQSLTEKQAKELRE   GRN+LEN NSRER
Sbjct: 406  GIKRKERPTDQGVSWLVKTQYISPLSMESSKQSLTEKQAKELRE---GRNLLENLNSRER 462

Query: 869  KIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDNAPTADSETYS 690
            +IQ+I+ASFEACK++P+HATNS LQ V+ILPL PDFDRYDDQFV+A FD+APTADSE YS
Sbjct: 463  QIQEIQASFEACKARPIHATNSRLQAVDILPLFPDFDRYDDQFVVANFDSAPTADSEIYS 522

Query: 689  KLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDEREDISYSWIR 510
            KLDK +RD+HESQAIMKSFVAT SD AKP+KFLAYM PSP+ELSKD+YDE ED+SYSWIR
Sbjct: 523  KLDKCIRDSHESQAIMKSFVATSSDMAKPDKFLAYMVPSPNELSKDIYDESEDVSYSWIR 582

Query: 509  EYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDEIEHYXXXXXX 330
            EYHWDVRGDDADDP TYLV FGES+A Y PLPTKLILRKKRA EGKSS+E+EH+      
Sbjct: 583  EYHWDVRGDDADDPATYLVTFGESQAHYMPLPTKLILRKKRAREGKSSEEVEHFPVPSRL 642

Query: 329  XXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQKVVVEDQDMDQSSGAE 150
                      +ELKE G YS SKG   +SKR R+D EDGLG+ QK  V+D + DQSSG E
Sbjct: 643  TVRKRSTVAAIELKEVGGYSASKGSGFNSKRARLDMEDGLGQSQK-SVDDMEPDQSSGGE 701

Query: 149  YDSSD 135
            YD SD
Sbjct: 702  YDMSD 706


>ref|XP_007217663.1| hypothetical protein PRUPE_ppa002145mg [Prunus persica]
            gi|462413813|gb|EMJ18862.1| hypothetical protein
            PRUPE_ppa002145mg [Prunus persica]
          Length = 709

 Score =  670 bits (1729), Expect = 0.0
 Identities = 379/742 (51%), Positives = 451/742 (60%), Gaps = 14/742 (1%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGYS-------GGDG--- 2169
            MASYRP PP  QS+F                   + NQY+QNWGY+       GGDG   
Sbjct: 1    MASYRPFPP--QSSFGPPPNQNPLTPTPPPPPSQRGNQYNQNWGYNASSGGGGGGDGAVP 58

Query: 2168 ---SSFSHNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXX 1998
               SS+  NYN       + HG YG   +QH                             
Sbjct: 59   AASSSYPQNYN-------YNHGNYGPPRTQH-------------------PHPPPQYNYP 92

Query: 1997 XXXXXXXXXXXXXXXXXXXXXSMNLQP-QPASAPMYYPSSQYSQFNHQLLQXXXXXXXXX 1821
                                 + N  P QP  APMYY +SQYSQ++HQ +Q         
Sbjct: 93   PPPPPPESSYPPPPPPQAPPVAQNKMPLQPPQAPMYYQNSQYSQYSHQPIQPLQQPPPPP 152

Query: 1820 XXXXXXXXXXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGA 1641
                                    P        R   EKG P+DV+ S  RE GH N G 
Sbjct: 153  PPPFSPSSSVPPPPPPPGSPPPPPPQSKDGGVDRGSHEKGAPRDVSVSGRREHGHLNHGV 212

Query: 1640 LRKQHKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQ 1461
             +KQHKPPVP +P KK NGP GR+ET                          +SQN+VLQ
Sbjct: 213  PQKQHKPPVPSMPVKKANGPPGRVETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQ 272

Query: 1460 KTQMISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQ 1281
            KTQM+SSG KGH SI+GS MGERR T  LSGER ENRLKKPTTF+CKLKFRNELPDP+AQ
Sbjct: 273  KTQMLSSG-KGHGSIAGSRMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQ 331

Query: 1280 PKLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXX 1101
            PKL+SL+++KD+ TKY++TSLEK +KP+L+VE           LSVYNPP   R      
Sbjct: 332  PKLMSLKKDKDQYTKYTITSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPS-VRPPLALE 390

Query: 1100 XXXXXXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELR 921
                       TP+K +GI+RKERPTDKGV+WLVKTQYIS LS ++ +QSLTEKQAKELR
Sbjct: 391  DEELLRDDVAATPVKNNGIRRKERPTDKGVAWLVKTQYISPLSMDSARQSLTEKQAKELR 450

Query: 920  EIKGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQF 741
            E+KGGRNIL+N N RER+I+ IEASFEACKS+PVHATN NL PVEILPLLPDF+RY+DQF
Sbjct: 451  EMKGGRNILDNLNDRERQIKDIEASFEACKSRPVHATNKNLYPVEILPLLPDFERYEDQF 510

Query: 740  VIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDEL 561
            V+AAFD APTADSE YSKLD+S  DA+ES+AIMKS+  TG+D A PEKFLAYM PSP+EL
Sbjct: 511  VLAAFDGAPTADSEIYSKLDQSGHDAYESRAIMKSYKVTGADPANPEKFLAYMVPSPNEL 570

Query: 560  SKDMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAA 381
            SKD YDE ED+SYSW+REYH+DVRGDD  DPTTYLV+F E EARYAPLPTKL+LRKKR+ 
Sbjct: 571  SKDPYDESEDVSYSWVREYHYDVRGDDVHDPTTYLVSFDEEEARYAPLPTKLVLRKKRSK 630

Query: 380  EGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQ 201
            EGK+SDE+EH+                +ELK+SG Y  S+G + + K RR D ED L R 
Sbjct: 631  EGKTSDEVEHFPAPSRVTVRQRSTVAAIELKDSGDY--SRGSVSNLKTRRFDVEDTLERP 688

Query: 200  QKVVVEDQDMDQSSGAEYDSSD 135
            +K +   QD+D+ SGAE D SD
Sbjct: 689  RK-IARHQDIDEYSGAEDDLSD 709


>ref|XP_004235642.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Solanum
            lycopersicum]
          Length = 698

 Score =  667 bits (1721), Expect = 0.0
 Identities = 386/734 (52%), Positives = 444/734 (60%), Gaps = 6/734 (0%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWG-YSGGDGSSFSH-NYN 2145
            MASYRP PP  QS+FV                  + +QYSQNWG Y   DGSS++  NY+
Sbjct: 1    MASYRPFPPSSQSSFVPPPPPPQNQNPPPPPSQSRGSQYSQNWGGYGVNDGSSYAQQNYS 60

Query: 2144 QTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1965
            Q        H G   S+ QH G                                      
Sbjct: 61   QV-------HQG---SNYQHPGYVPPPPATRNQYPPPPPPPADSSYPPPPPPSG------ 104

Query: 1964 XXXXXXXXXXSMNLQPQPASAPMYYPSSQYSQF--NHQLLQXXXXXXXXXXXXXXXXXXX 1791
                          QP P  APMYYPSSQ SQ+  NH L                     
Sbjct: 105  --------------QPPPPPAPMYYPSSQDSQYSQNHPLEPPPPPPPPSSPPTSAIPPPP 150

Query: 1790 XXXXXXXXXXXXXXPTVG-QNKESRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKPPV 1614
                               Q  ESR   EK        S WRE  H N  A  KQ    V
Sbjct: 151  PPSQPPSPPPPPSSVPPQKQRNESRHSVEKR-----RESGWRESRHGNHTARSKQPDHSV 205

Query: 1613 PLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISSGM 1434
            P +P KK+N  SGR+ET                          ESQN VLQKTQM++SG 
Sbjct: 206  PPLPMKKSNAHSGRVETEEERRSRKKREIEKQRHEEKNRQHLKESQNKVLQKTQMLTSGT 265

Query: 1433 KGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRRE 1254
            KGH SIS S M +RRTT LLSGER ENRLKKPTTFLCKLKFRNELPDPTAQPKLL+LRR+
Sbjct: 266  KGHGSISASHMADRRTTPLLSGERTENRLKKPTTFLCKLKFRNELPDPTAQPKLLTLRRD 325

Query: 1253 KDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXXXX 1074
             DR TKYS+TSLEK+HKPQL+VE           LSVYNPPKG +               
Sbjct: 326  PDRFTKYSITSLEKMHKPQLHVEPDLGIPLDLLDLSVYNPPKGVKIPLAPEDEELLRDDN 385

Query: 1073 PVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRNIL 894
            P+TPIK+DGIK+KERPTDKGVSWLVKTQYIS LSTE+ KQSLTEKQAKELRE KGGRNIL
Sbjct: 386  PITPIKKDGIKKKERPTDKGVSWLVKTQYISPLSTESAKQSLTEKQAKELRETKGGRNIL 445

Query: 893  ENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDNAP 714
            EN N R+R+IQ+IEASFEACKS+P+HA+N  LQP+++ PL PDFDRY D FV+A +D+AP
Sbjct: 446  ENLNKRDRQIQEIEASFEACKSRPIHASNRRLQPIKVQPLYPDFDRYKDPFVLANYDSAP 505

Query: 713  TADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDERE 534
            TADSETYSKLDK+VRDA ESQA+MKSFVAT SD+ KP+KFLAYM P+P+ELSKD+YDE E
Sbjct: 506  TADSETYSKLDKTVRDACESQAVMKSFVATSSDADKPDKFLAYMVPAPNELSKDIYDESE 565

Query: 533  DISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDEIE 354
            DISYSW+REYHWDVRGDDADDP TY+VAFGE EARY PLPTKL+LRKKRA EGKS++E+E
Sbjct: 566  DISYSWVREYHWDVRGDDADDPNTYVVAFGEREARYMPLPTKLVLRKKRAREGKSNEEVE 625

Query: 353  HYXXXXXXXXXXXXXXXXVELKESGSYSGS-KGDMLSSKRRRVDTEDGLGRQQKVVVEDQ 177
            H+                +ELKE G Y+ + KG++ SSKR R+  ED +G Q    + D 
Sbjct: 626  HFPVPSRVTVRKRPTAAAIELKEEGGYTTALKGNVSSSKRSRISHEDDVGEQHN-NMHDD 684

Query: 176  DMDQSSGAEYDSSD 135
            D DQSSG EY  SD
Sbjct: 685  DQDQSSGGEYYMSD 698


>ref|XP_008348493.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated factor 1
            homolog [Malus domestica]
          Length = 709

 Score =  645 bits (1663), Expect = 0.0
 Identities = 378/746 (50%), Positives = 447/746 (59%), Gaps = 18/746 (2%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGY-------SGGDG--- 2169
            MASYRP PP  QS+F                     +QY+QNWGY       SGGDG   
Sbjct: 1    MASYRPFPP--QSSFAPAPNQNPLPPAPPPPQQR-GSQYNQNWGYNASSGGSSGGDGAVP 57

Query: 2168 ---SSFSHNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXX 1998
               SS+  NYN       +QH  YG   +QH                             
Sbjct: 58   AAPSSYPPNYN-------YQHSSYGPPRTQH------------------PHPPPQYNYQP 92

Query: 1997 XXXXXXXXXXXXXXXXXXXXXSMNLQP-QPASAPMYYPSSQYSQFNHQLLQXXXXXXXXX 1821
                                 + N  P QP  AP+YY +SQYSQ++HQ +Q         
Sbjct: 93   PPPPPPEPSYPQPPPPQAPQAAQNXMPLQPPQAPIYYQNSQYSQYSHQPIQPXQPPPPPP 152

Query: 1820 XXXXXXXXXXXXXXXXXXXXXXXXPTVGQNKES---RPDGEKGVPKDVTGSRWREPGHSN 1650
                                        Q+K+S   R   +KG  ++ + SR RE GH N
Sbjct: 153  PPLSPNSSVPPPPPPPGSPPPPPP----QSKDSGVDRRSHDKGASREASVSRRREHGHLN 208

Query: 1649 QGALRKQHKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNT 1470
             G   KQ KPPVP VP KK NGP GR+ET                          +SQN+
Sbjct: 209  HGVPPKQQKPPVPSVPVKKANGPPGRVETEEERRLRKKREFEKQRQEEKHXQQLKDSQNS 268

Query: 1469 VLQKTQMISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDP 1290
            VLQKTQM+SSG KGH SI GS MGERR T  LSGER ENRLKKPTTF+CKLKFRNELPDP
Sbjct: 269  VLQKTQMLSSG-KGHGSIVGSRMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDP 327

Query: 1289 TAQPKLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGK-RXX 1113
            +AQPKL+SL++E D+ TKY++TSLEK +KP+L+VE           LSVYNPP    R  
Sbjct: 328  SAQPKLMSLKKENDQYTKYTITSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPPPSVRLP 387

Query: 1112 XXXXXXXXXXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQA 933
                          VTP+K+DGI+RKERPTDKGV+WLVKTQYIS LS E+ +QSLTEKQA
Sbjct: 388  LALEDEELLRDDVAVTPVKKDGIRRKERPTDKGVAWLVKTQYISPLSMESARQSLTEKQA 447

Query: 932  KELREIKGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRY 753
            KELRE+KG RNILEN N RER+I++IEASFEACKS+PVHATN NL   E+LPLLPDFDRY
Sbjct: 448  KELREMKG-RNILENLNDRERQIKEIEASFEACKSRPVHATNKNLYAEEVLPLLPDFDRY 506

Query: 752  DDQFVIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPS 573
            DDQFV+AAFD APTADSE YSKLD+S  DA+ES+AIMKS+  TG D A PEKFLAYM PS
Sbjct: 507  DDQFVLAAFDGAPTADSEIYSKLDQSGHDAYESRAIMKSYKVTGVDPANPEKFLAYMVPS 566

Query: 572  PDELSKDMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRK 393
            P+ELSKD YDE ED+SYSW+REYH+DVRGDD  DPTTYLV+F + EARYAPLPTKL+LRK
Sbjct: 567  PNELSKDPYDESEDVSYSWVREYHYDVRGDDVHDPTTYLVSFDDDEARYAPLPTKLVLRK 626

Query: 392  KRAAEGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDG 213
            KR+ EGK+SDE+EH+                +ELK++G Y  S+G +   K R  D ED 
Sbjct: 627  KRSKEGKTSDEVEHFPAPARVTVRRRSTVASIELKDAGDY--SRGSISKLKTRGYDVEDT 684

Query: 212  LGRQQKVVVEDQDMDQSSGAEYDSSD 135
            L R QK +   QDMD+ SG + D SD
Sbjct: 685  LERPQK-IARHQDMDEYSGGDDDLSD 709


>ref|XP_009353546.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Pyrus x
            bretschneideri]
          Length = 710

 Score =  644 bits (1662), Expect = 0.0
 Identities = 374/743 (50%), Positives = 441/743 (59%), Gaps = 15/743 (2%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGY-------SGGDG--- 2169
            MASYRP PP  QS+F                     +QY+QNWGY       SGGDG   
Sbjct: 1    MASYRPFPP--QSSFAPAPNQNPLPPAPPPPQQR-GSQYNQNWGYNASSGGSSGGDGAVP 57

Query: 2168 ---SSFSHNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXX 1998
               SS+  NYN       +QH  YG   +QH                             
Sbjct: 58   AAPSSYPPNYN-------YQHSSYGPPRTQH------------------PHPPPQYNYQP 92

Query: 1997 XXXXXXXXXXXXXXXXXXXXXSMNLQP-QPASAPMYYPSSQYSQFNHQLLQXXXXXXXXX 1821
                                 + N  P QP  AP+YY +SQYSQ++HQ +Q         
Sbjct: 93   PPPPPPEPSYPQPPPPQAPPAAQNKMPLQPPQAPIYYQNSQYSQYSHQPIQPSQQPPPPP 152

Query: 1820 XXXXXXXXXXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGA 1641
                                    P    +   R   +KG  ++ + SR RE GH N G 
Sbjct: 153  PPPLSPNSSVPPPPPPPGSPPPPPPQSKDSGVDRRSHDKGASREASVSRRREHGHLNHGV 212

Query: 1640 LRKQHKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQ 1461
              KQ KPPVP VP KK NGP GR+ET                          +SQN+VLQ
Sbjct: 213  PPKQQKPPVPSVPVKKANGPPGRVETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQ 272

Query: 1460 KTQMISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQ 1281
            KTQM+SSG KGH SI GS MGERR T  LSGER ENRLKKPTTF+CKLKFRNELPDP+AQ
Sbjct: 273  KTQMLSSG-KGHGSIVGSRMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQ 331

Query: 1280 PKLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGK-RXXXXX 1104
            PKL+SL++EKD+ TKY++TSLEK +KP+L+VE           LSVYNPP    R     
Sbjct: 332  PKLMSLKKEKDQYTKYTITSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPPPSVRLPLAV 391

Query: 1103 XXXXXXXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKEL 924
                       VTP+K+DGI+RKERPTDKGV+WLVKTQYIS LS E+ +QSLTEKQAKEL
Sbjct: 392  EDEELLRDDVAVTPVKKDGIRRKERPTDKGVAWLVKTQYISPLSMESARQSLTEKQAKEL 451

Query: 923  REIKGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQ 744
            RE+KG RNILEN N RER+I++IEASFEACKS+PVHATN NL   E+LPLLPDFDRYDDQ
Sbjct: 452  REMKG-RNILENLNDRERQIKEIEASFEACKSRPVHATNKNLYAEEVLPLLPDFDRYDDQ 510

Query: 743  FVIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDE 564
            FV+AAFD APTADSE YSKLD+S  DA+ES+AIMKS+  TG D A PEKFLAYM PSP+E
Sbjct: 511  FVLAAFDGAPTADSEIYSKLDQSGHDAYESRAIMKSYKVTGVDPANPEKFLAYMVPSPNE 570

Query: 563  LSKDMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRA 384
            LSKD YDE ED+SYSW+REYH+DVRGDD  DPTTYLV+F + EARYAPLPTKL+LRKKR+
Sbjct: 571  LSKDPYDESEDVSYSWVREYHYDVRGDDVHDPTTYLVSFDDDEARYAPLPTKLVLRKKRS 630

Query: 383  AEGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGR 204
             EGK+SDE+EH+                +ELK++G Y  S G +   K R  D ED L R
Sbjct: 631  KEGKTSDEVEHFPAPARVTVRRRATVASIELKDAGDY--STGSVSKLKTRGYDVEDTLER 688

Query: 203  QQKVVVEDQDMDQSSGAEYDSSD 135
             QK +   QD+D+ SG   D SD
Sbjct: 689  PQK-IARHQDLDEYSGGNDDLSD 710


>ref|XP_010098144.1| hypothetical protein L484_026278 [Morus notabilis]
            gi|587885724|gb|EXB74581.1| hypothetical protein
            L484_026278 [Morus notabilis]
          Length = 697

 Score =  642 bits (1657), Expect = 0.0
 Identities = 344/600 (57%), Positives = 412/600 (68%), Gaps = 6/600 (1%)
 Frame = -2

Query: 1919 PQPASA----PMYYPSSQYSQFNH-QLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1755
            P PA A    P YYP SQ+ Q+N+ Q +Q                               
Sbjct: 102  PPPAPAMQQPPAYYPPSQFPQYNNPQPMQPLQQPPPPPPPPSSPPPPPSSPPPPPPPQSQ 161

Query: 1754 XXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQ-GALRKQHKPPVPLVPAKKTNGPS 1578
                V  +     + ++GV K+V GS  RE G+SN  G   KQHK PVP VP KK+NGP 
Sbjct: 162  GKENV--HHRGLQERDRGVSKEVAGSGRREHGYSNHHGTHHKQHKYPVPSVPVKKSNGPM 219

Query: 1577 GRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISSGMKGHVSISGSCMG 1398
            GR+ET                          ESQ++ LQKTQ++S+  KGH SI+GS MG
Sbjct: 220  GRVETEEERRLRKKREFEKQKQEEKHRQHLKESQHSALQKTQILSAA-KGHGSIAGSRMG 278

Query: 1397 ERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRREKDRLTKYSVTSL 1218
            ERR T+ LSGERIENRLKKPTTFLCKLKFRNELPDP+AQPKL+S++REKD+ +KY++TSL
Sbjct: 279  ERRATSFLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMSMKREKDQYSKYTITSL 338

Query: 1217 EKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXXXXPVTPIKRDGIKR 1038
            EK +KP+L+VE           LSVYNPP   R                VTP+K+DGIKR
Sbjct: 339  EKTYKPKLFVEPDLGIPLNLLDLSVYNPPS-VRPPLDPEDEELLRDDEAVTPVKKDGIKR 397

Query: 1037 KERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRNILENFNSRERKIQQ 858
            KERPTDKGV+WLVKTQYIS LS E+TKQSLTEKQAKELRE+KGGRNILEN N R+R+I++
Sbjct: 398  KERPTDKGVAWLVKTQYISPLSMESTKQSLTEKQAKELRELKGGRNILENLNDRDRQIKE 457

Query: 857  IEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDNAPTADSETYSKLDK 678
            I+ASFEACKS+PVHATN +L PVE+LPLLPDFDRYDDQFV+AAFD+APTADSE YSK+D+
Sbjct: 458  IQASFEACKSRPVHATNKSLYPVEVLPLLPDFDRYDDQFVLAAFDSAPTADSEVYSKMDQ 517

Query: 677  SVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDEREDISYSWIREYHW 498
            S+RDAHESQA++KS+  TGSD   PEKFLAYM PSPDELSKD+YDE ED+SYSW+REYHW
Sbjct: 518  SIRDAHESQAVLKSYKVTGSDPGNPEKFLAYMVPSPDELSKDIYDEHEDVSYSWVREYHW 577

Query: 497  DVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDEIEHYXXXXXXXXXX 318
            DVRGDDADDPTTYLV+F E+EARY PLPTKL+LRKKRA EG+S DE+EH+          
Sbjct: 578  DVRGDDADDPTTYLVSFDETEARYLPLPTKLVLRKKRAKEGRSGDEVEHFPVPARVTVRR 637

Query: 317  XXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQKVVVEDQDMDQSSGAEYDSS 138
                  VELK++  YS  +G + + KR   D EDGL R  K V   +D+D+ SGAE D S
Sbjct: 638  RPTVSVVELKDAEVYSNPRGSLSNFKRGGSDVEDGLERSHK-VARQEDVDEYSGAEDDLS 696


>ref|XP_008222683.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Prunus
            mume]
          Length = 684

 Score =  641 bits (1654), Expect = 0.0
 Identities = 364/729 (49%), Positives = 439/729 (60%), Gaps = 1/729 (0%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGYSGGDGSSFSHNYNQT 2139
            MASYRP PP  QS+F                   + NQY+QNWGY          NYN  
Sbjct: 1    MASYRPFPP--QSSFGPPPNQNPLTPTPPPPPPQRGNQYNQNWGY----------NYN-- 46

Query: 2138 HPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1959
                   H  YG   +QH                                          
Sbjct: 47   -------HSNYGPPRTQH-------------------PHPQPQYNYPPLPPPPESSYPPP 80

Query: 1958 XXXXXXXXSMNLQP-QPASAPMYYPSSQYSQFNHQLLQXXXXXXXXXXXXXXXXXXXXXX 1782
                    + N  P Q   APMYY +SQYSQ++HQ +Q                      
Sbjct: 81   PPPQAPPVAQNKMPLQAPQAPMYYQNSQYSQYSHQPIQPLQQPSPPPPPPFSPSSSAPPP 140

Query: 1781 XXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKPPVPLVP 1602
                       P        R   EKG  ++V+ S   E GH N G  +KQHKPPVP + 
Sbjct: 141  PPPPGSPPPPPPQSKDGGVDRGSHEKGASREVSVSGRGEHGHLNHGVPQKQHKPPVPSMQ 200

Query: 1601 AKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISSGMKGHV 1422
             KK NGP GR+ET                          +SQN+VLQKTQM+SSG KGH 
Sbjct: 201  VKKANGPPGRLETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQKTQMLSSG-KGHG 259

Query: 1421 SISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRREKDRL 1242
            SI+GS MGERR T  LSGER ENRLKKPTTF+CKLKFRNELPDP+AQPKL+SL+++KD+ 
Sbjct: 260  SIAGSRMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQPKLMSLKKDKDQY 319

Query: 1241 TKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXXXXPVTP 1062
            TKY++TSLEK +KP+L+VE           LSVYNPP   R                 TP
Sbjct: 320  TKYTITSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPS-VRPPLALEDEELLRDDVAATP 378

Query: 1061 IKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRNILENFN 882
            +K++GI+RKERPTDKGV+WLVKTQYIS +S ++ +QSLTEKQAKELRE+KGGRNIL+N N
Sbjct: 379  VKKNGIRRKERPTDKGVAWLVKTQYISPISMDSARQSLTEKQAKELREMKGGRNILDNLN 438

Query: 881  SRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDNAPTADS 702
             RER+I++IEASFEACKS+PV+ATN NL PVE+LPLLPDF+RY+DQFV+AAFD APTADS
Sbjct: 439  DRERQIKEIEASFEACKSRPVYATNKNLYPVEVLPLLPDFERYEDQFVLAAFDGAPTADS 498

Query: 701  ETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDEREDISY 522
            E YSKLD+S  DA+ES+AIMKS+  TG+D A PEKFLAYM PSP+ELSKD YDE ED+SY
Sbjct: 499  EIYSKLDQSGHDAYESRAIMKSYKVTGADPANPEKFLAYMVPSPNELSKDPYDESEDVSY 558

Query: 521  SWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDEIEHYXX 342
            SW+REYH+DVRGDD  DPTTYLV+F E EARYAPLPTKL+LRKKR+ EGK+SDE+EH+  
Sbjct: 559  SWVREYHYDVRGDDVHDPTTYLVSFDEEEARYAPLPTKLVLRKKRSKEGKTSDEVEHFPA 618

Query: 341  XXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQKVVVEDQDMDQS 162
                          +ELK+SG Y  S+G + + K RR D ED L R +K +   QD+D+ 
Sbjct: 619  PSRVTVRQRSTVAAIELKDSGDY--SRGSVSNLKTRRFDVEDTLERPRK-ISRHQDIDEY 675

Query: 161  SGAEYDSSD 135
            SGAE D SD
Sbjct: 676  SGAEDDLSD 684


>ref|XP_008367453.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Malus
            domestica]
          Length = 710

 Score =  640 bits (1652), Expect = e-180
 Identities = 365/735 (49%), Positives = 436/735 (59%), Gaps = 7/735 (0%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGY------SGGDGSSFS 2157
            MASYRP PP  QS+F                     +QY+QNWGY      SGG   +  
Sbjct: 1    MASYRPFPP--QSSFAPPPNQNPLPPAPPLPQQR-GSQYNQNWGYNASSGGSGGSDGAVP 57

Query: 2156 HNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1977
               +   PN ++QH  Y    +QH                                    
Sbjct: 58   AAPSSYPPNYNYQHSSYAPPRTQH-----------------PRPPPQYNYQTPPPPPPES 100

Query: 1976 XXXXXXXXXXXXXXSMNLQPQPASAPMYYPSSQYSQFNHQLLQXXXXXXXXXXXXXXXXX 1797
                            N+  QP  APMYY +SQYSQ++HQ +Q                 
Sbjct: 101  SYPPPPPPQAPPAGQSNMPLQPPQAPMYYQNSQYSQYSHQPIQPSQQPLPPPPPPLSPNS 160

Query: 1796 XXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKPP 1617
                            P    +   R   +KG  ++ + S  RE GH N G   KQ KPP
Sbjct: 161  SVPPPPPPPGSPPPPPPQSKDSGVDRGSHDKGASREASLSGRRERGHLNHGVPEKQQKPP 220

Query: 1616 VPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISSG 1437
            VP VPAKK NGP GR+ET                          +SQN+VLQKT M+SSG
Sbjct: 221  VPSVPAKKANGPPGRVETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQKTHMLSSG 280

Query: 1436 MKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRR 1257
             KGH SI GS MGERR T  LSGER ENRLKKPTTF+CKLKFRNELPDP+AQPKL+SL++
Sbjct: 281  -KGHGSIVGSRMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQPKLMSLKK 339

Query: 1256 EKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGK-RXXXXXXXXXXXXX 1080
            EKD+ TKY++TSLEK +KP+L+VE           LSVYNPP    R             
Sbjct: 340  EKDQYTKYTITSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPPPSVRLPLALEDEELLRD 399

Query: 1079 XXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRN 900
               VTP+K+DGI+RKERPTDKGV+WLVKTQYIS LS E+ +QSLTEKQAKELRE+KG RN
Sbjct: 400  DVAVTPVKKDGIRRKERPTDKGVAWLVKTQYISPLSMESARQSLTEKQAKELREMKG-RN 458

Query: 899  ILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDN 720
            ILEN N RER+I++IEASFEACKS+PVHATN NL   E+LPLLPDFDRYDDQFV+A+FD 
Sbjct: 459  ILENLNDRERQIKEIEASFEACKSRPVHATNKNLYAEEVLPLLPDFDRYDDQFVLASFDG 518

Query: 719  APTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDE 540
            APTADSE YSKLD+SV DA+ES+AIMKS+  TG D A PEKFLAYM PSP+ELSKD YDE
Sbjct: 519  APTADSEIYSKLDQSVHDAYESRAIMKSYKVTGVDPANPEKFLAYMVPSPNELSKDPYDE 578

Query: 539  REDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDE 360
             ED+SYSW+REYH+DVRGDD  DPTTYLV+F + EARYAPLPTKL+LRKKR+ EGK+SDE
Sbjct: 579  SEDVSYSWVREYHYDVRGDDVHDPTTYLVSFDDDEARYAPLPTKLVLRKKRSKEGKTSDE 638

Query: 359  IEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQKVVVED 180
            +EH+                +ELK++G Y   +G +   + R  D ED L R QK +   
Sbjct: 639  VEHFPAPARVTVRRRPTVASIELKDAGDY--LRGSVSKLRTRGYDVEDTLERPQK-IARH 695

Query: 179  QDMDQSSGAEYDSSD 135
             DMD+ SG + D SD
Sbjct: 696  HDMDEYSGGDDDLSD 710


>ref|XP_009342534.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Pyrus x
            bretschneideri]
          Length = 710

 Score =  639 bits (1649), Expect = e-180
 Identities = 371/743 (49%), Positives = 440/743 (59%), Gaps = 15/743 (2%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGY-------SGGDG--- 2169
            MASYRP PP  QS+F                     +QY+QNWGY       SGGDG   
Sbjct: 1    MASYRPFPP--QSSFAPAPNQNPLPPAPPPPQQR-GSQYNQNWGYNASSGGSSGGDGAVP 57

Query: 2168 ---SSFSHNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXX 1998
               SS+  NYN       +QH  YG   +QH                             
Sbjct: 58   AAPSSYPPNYN-------YQHSSYGPPRTQH------------------PHPPPQYNYQP 92

Query: 1997 XXXXXXXXXXXXXXXXXXXXXSMNLQP-QPASAPMYYPSSQYSQFNHQLLQXXXXXXXXX 1821
                                 + N  P QP  AP+YY +SQYSQ++HQ +Q         
Sbjct: 93   PPPPPPEPSYPQPPPPQASPAAQNKMPLQPPQAPIYYQNSQYSQYSHQPIQPSQQPPPPP 152

Query: 1820 XXXXXXXXXXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGA 1641
                                    P    +   R   +KG  ++ + SR RE GH N G 
Sbjct: 153  PPPLSPNSSVPPPPPPPGSPPPPPPQSKDSGVDRRSHDKGASREASVSRRREHGHLNHGV 212

Query: 1640 LRKQHKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQ 1461
              KQ KPPVP VP KK NGP GR+ET                          +SQN+VLQ
Sbjct: 213  PPKQQKPPVPSVPVKKANGPPGRVETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQ 272

Query: 1460 KTQMISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQ 1281
            K+QM+SSG KGH SI GS MGERR T  LSGER ENRLKKPTTF+CKLKFRNELPDP+AQ
Sbjct: 273  KSQMLSSG-KGHGSIVGSRMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQ 331

Query: 1280 PKLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGK-RXXXXX 1104
            PKL+SL++EKD+ TKY++TSLEK +KP+L+VE           LSVYNPP    R     
Sbjct: 332  PKLMSLKKEKDQYTKYTITSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPPPSVRLPLAV 391

Query: 1103 XXXXXXXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKEL 924
                       VTP+K+DGI+RKERPTDKGV+WLVKTQYIS LS ++ +QSLTEKQAKEL
Sbjct: 392  EDEELLQDDVAVTPVKKDGIRRKERPTDKGVAWLVKTQYISPLSMDSARQSLTEKQAKEL 451

Query: 923  REIKGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQ 744
            RE+KG RNILEN N RER+I++IEASFEACKS PVHATN NL   E+LPLLPDF RYDDQ
Sbjct: 452  REMKG-RNILENLNDRERQIKEIEASFEACKSHPVHATNKNLYAEEVLPLLPDFHRYDDQ 510

Query: 743  FVIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDE 564
            FV+AAFD APTADSE YSKLD+S  DA+ES+AIMKS+  TG D A PEKFLAYM PSP+E
Sbjct: 511  FVLAAFDGAPTADSEIYSKLDQSGHDAYESRAIMKSYKVTGVDPANPEKFLAYMVPSPNE 570

Query: 563  LSKDMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRA 384
            LSKD YDE ED+SYSW+REYH+DVRGDD  DPTTYLV+F + EARYAPLPTKL+LRKKR+
Sbjct: 571  LSKDPYDESEDVSYSWVREYHYDVRGDDVHDPTTYLVSFDDDEARYAPLPTKLVLRKKRS 630

Query: 383  AEGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGR 204
             EGK+SDE+EH+                +ELK++G Y  S G +   K R  D ED L R
Sbjct: 631  KEGKTSDEVEHFPAPARVTVRRRSTVASIELKDAGDY--STGSVSKLKTRGYDVEDTLER 688

Query: 203  QQKVVVEDQDMDQSSGAEYDSSD 135
             QK +   QD+D+ SG + D SD
Sbjct: 689  PQK-IARHQDLDEYSGGDDDLSD 710


>ref|XP_009786773.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nicotiana
            sylvestris]
          Length = 656

 Score =  638 bits (1645), Expect = e-180
 Identities = 337/535 (62%), Positives = 391/535 (73%), Gaps = 5/535 (0%)
 Frame = -2

Query: 1724 SRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKP---PVPLVPAKKTNGPSGRIETXXX 1554
            SRP G  G  +  +G  WREPGH N  A  +  +P    VP +P KK    + R+ET   
Sbjct: 129  SRPSG--GEKRRDSG--WREPGHGNHQAAGRSKQPGGRSVPPLPVKKA--ANARVETEEE 182

Query: 1553 XXXXXXXXXXXXXXXXXXXXXXXE-SQNTVLQKTQMISSGMKGHVSISGSCMGERRTTTL 1377
                                   + SQN VLQKTQM++SGMKGH SIS S M +RRTT L
Sbjct: 183  RRIRKKRELEKQRHEEKHRQQQLKESQNRVLQKTQMLASGMKGHGSISASHMADRRTTPL 242

Query: 1376 LSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRREKDRLTKYSVTSLEKLHKPQ 1197
            LS ER ENRLKKPTTFLCKLKFRNELPDP AQPKLL + R+KDR TKYS+TSLEK+HKP+
Sbjct: 243  LSSERTENRLKKPTTFLCKLKFRNELPDPVAQPKLLQIPRDKDRFTKYSITSLEKMHKPE 302

Query: 1196 LYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXXXXPVTPIKRDGIKRKERPTDK 1017
            LYVE           LSVYNPPKG+R               P+TPIK+DGIK+KERPTDK
Sbjct: 303  LYVEPDLGIPLDLLDLSVYNPPKGERLPLAPEDEELLRDDNPITPIKKDGIKKKERPTDK 362

Query: 1016 GVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRNILENFNSRERKIQQIEASFEA 837
            GVSWLVKTQYIS LSTE+ KQSLTEKQAKELRE +GGRNILEN N+R+R++Q+IEASFEA
Sbjct: 363  GVSWLVKTQYISPLSTESAKQSLTEKQAKELRENRGGRNILENLNNRDRQLQEIEASFEA 422

Query: 836  CKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDNAPTADSETYSKLDKSVRDAHE 657
            CKS+P+HATN  LQPV++ PL PDFDRY D FV+A FD+APTADSETY+KLDK+VRDA+E
Sbjct: 423  CKSRPIHATNRRLQPVKVQPLFPDFDRYQDPFVLANFDSAPTADSETYNKLDKTVRDAYE 482

Query: 656  SQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDEREDISYSWIREYHWDVRGDDA 477
            SQAIMKSFVAT SD+ KP+KFLAYM P+P+EL+KDMYDE EDISYSW+REYHWDVRGDDA
Sbjct: 483  SQAIMKSFVATSSDADKPDKFLAYMVPAPNELTKDMYDENEDISYSWVREYHWDVRGDDA 542

Query: 476  DDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDEIEHYXXXXXXXXXXXXXXXXV 297
            DDPTTYLVAFGE+EA Y PLPTKL+LRKKRA EGKS+DE+EH+                +
Sbjct: 543  DDPTTYLVAFGETEAHYMPLPTKLVLRKKRAREGKSNDEVEHFPVPSRVTVRRRKTVAAI 602

Query: 296  ELKESGSY-SGSKGDMLSSKRRRVDTEDGLGRQQKVVVEDQDMDQSSGAEYDSSD 135
            ELKE G Y + SKG + SS+R R + ED +G QQ   + D D DQSSGAEYD SD
Sbjct: 603  ELKEEGGYTTASKGGVSSSRRARTNDEDAVGEQQN-DMHDGDQDQSSGAEYDMSD 656


>ref|XP_009608739.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Nicotiana
            tomentosiformis]
          Length = 656

 Score =  634 bits (1634), Expect = e-178
 Identities = 330/520 (63%), Positives = 383/520 (73%), Gaps = 5/520 (0%)
 Frame = -2

Query: 1679 SRWREPGHSNQGALRKQHKP---PVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXX 1509
            S WRE GH N  A  +  +P    +P +P KK    + R+ET                  
Sbjct: 140  SAWRESGHGNHQAAGRSKQPGGRSMPPLPVKKA--ANARVETEEERRIRKKRELEKQRHE 197

Query: 1508 XXXXXXXXE-SQNTVLQKTQMISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTT 1332
                    + SQN VLQKTQM++SGMKGH SIS S M +RRTT LLS ER ENRLKKPTT
Sbjct: 198  EKHRQQQLKESQNRVLQKTQMLASGMKGHGSISASHMADRRTTPLLSSERTENRLKKPTT 257

Query: 1331 FLCKLKFRNELPDPTAQPKLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXX 1152
            FLCKLKFRNELPDP AQPKLL + R+KDR TKYS+TSLEK+HKP+LYVE           
Sbjct: 258  FLCKLKFRNELPDPVAQPKLLQIPRDKDRFTKYSITSLEKMHKPELYVEPDLGIPLDLLD 317

Query: 1151 LSVYNPPKGKRXXXXXXXXXXXXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLS 972
            LSVYNPPKG+R               P+TPIK+DGIK+KERPTDKGVSWLVKTQYIS LS
Sbjct: 318  LSVYNPPKGERIPLAPEDEELLRDDNPITPIKKDGIKKKERPTDKGVSWLVKTQYISPLS 377

Query: 971  TEATKQSLTEKQAKELREIKGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQP 792
            TE+ KQSLTEKQAKELRE +GGRNILEN N+R+R++Q+IEASFEACKS+P+HATN  LQP
Sbjct: 378  TESAKQSLTEKQAKELRENRGGRNILENLNNRDRQLQEIEASFEACKSRPIHATNRRLQP 437

Query: 791  VEILPLLPDFDRYDDQFVIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDS 612
            V++ PL PDFDRY D FV+A FD+APTADSETY+KLDK+VRDA+ESQAIMKSFVAT SD+
Sbjct: 438  VKVQPLFPDFDRYQDPFVLANFDSAPTADSETYNKLDKTVRDAYESQAIMKSFVATSSDA 497

Query: 611  AKPEKFLAYMAPSPDELSKDMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEA 432
             KP+KFLAYM P+P+EL+KDMYDE EDISYSW+REYHWDVRGDDADDPTTYLVAFGE+EA
Sbjct: 498  DKPDKFLAYMVPAPNELTKDMYDENEDISYSWVREYHWDVRGDDADDPTTYLVAFGETEA 557

Query: 431  RYAPLPTKLILRKKRAAEGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSY-SGSKGD 255
             Y PLPTKL+LRKKRA EGKS+DE+EH+                +ELKE G Y + SKG 
Sbjct: 558  HYMPLPTKLVLRKKRAREGKSNDEVEHFPVPSRVTVRRRKTVAAIELKEEGGYATASKGG 617

Query: 254  MLSSKRRRVDTEDGLGRQQKVVVEDQDMDQSSGAEYDSSD 135
            + SS+R R + ED +G QQ   + D D DQSSGAEYD SD
Sbjct: 618  VSSSRRARTNDEDAVGEQQN-DMHDGDQDQSSGAEYDMSD 656


>ref|XP_004302858.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 693

 Score =  632 bits (1629), Expect = e-178
 Identities = 370/735 (50%), Positives = 439/735 (59%), Gaps = 7/735 (0%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQYSQNWGYS---GGDG---SSFS 2157
            MASYRP PP  Q  F                   + NQY+QNWGY+   GGDG   SSF 
Sbjct: 1    MASYRPFPP--QPAF-----PPPPPNQNPIAPPPRGNQYNQNWGYNAAAGGDGAAPSSFP 53

Query: 2156 HNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1977
             NY   HP     HG YG   +QH                                    
Sbjct: 54   QNYIH-HP-----HGNYGPPRAQH--------------------PHPPPQYSYPPPPPPP 87

Query: 1976 XXXXXXXXXXXXXXSMNLQPQPASAPMYYPS-SQYSQFNHQLLQXXXXXXXXXXXXXXXX 1800
                            NL  QP  APMYY S SQY+Q+ HQ +Q                
Sbjct: 88   DSSYPPPPPPQAPPGKNLPLQPPQAPMYYQSNSQYAQYGHQAMQPPPPPPPPLSPSLAIP 147

Query: 1799 XXXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKP 1620
                                G +K      +KG  KDV  S  RE GHSN   +  +HKP
Sbjct: 148  PPPPPPNSPPPPPPPKSRESGFDKGPH---DKGASKDVGASAKREHGHSNHHGVPPKHKP 204

Query: 1619 PVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISS 1440
            PVPLV  KK+NG  GR+ET                          ESQN+VLQKT ++SS
Sbjct: 205  PVPLV--KKSNGAPGRVETEEERRLRKKREFEKQRQEEKHRQQAKESQNSVLQKTHLMSS 262

Query: 1439 GMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLR 1260
            G KGH SI+GS MGERRTT  LSGER ENRLKKPTTF+CKLKFRNELPDP+AQPKL+S++
Sbjct: 263  G-KGHGSIAGSRMGERRTTPFLSGERAENRLKKPTTFVCKLKFRNELPDPSAQPKLMSMK 321

Query: 1259 REKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXX 1080
            ++ D+ TKY++TSLEK +KP+L+VE           LSVYNPP G R             
Sbjct: 322  KDPDQYTKYTITSLEKNYKPKLFVEPDLGIPLDLLDLSVYNPPPGPRPPLAPEDEELLRD 381

Query: 1079 XXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRN 900
               VTP+K+DGI+RKERPTDKGV+WLVKTQYIS LS ++ KQSLTEKQAKELRE+KGGRN
Sbjct: 382  DVAVTPVKKDGIRRKERPTDKGVAWLVKTQYISPLSMDSAKQSLTEKQAKELREMKGGRN 441

Query: 899  ILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDN 720
            +L+N N RER+I++IEASFEACKS+PVHATN NL PVE+LPLLP  +RY+DQFV+A FD 
Sbjct: 442  LLDNLNDRERQIKEIEASFEACKSRPVHATNKNLYPVEVLPLLPXHNRYEDQFVLAGFDG 501

Query: 719  APTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDE 540
            APTADSE YSKLD+S  D  ES+AIMKS+  TG+D A P+KFLAYM PSP+ELSKD YDE
Sbjct: 502  APTADSEIYSKLDQSDHDLCESRAIMKSYKVTGADPANPDKFLAYMVPSPNELSKDPYDE 561

Query: 539  REDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDE 360
             EDISYSW+REY +DVRGDD DD TTYLV+F E  ARYAPLP KL+LRKKRA EG+S+DE
Sbjct: 562  SEDISYSWVREYQYDVRGDDVDDLTTYLVSFDEDAARYAPLPAKLVLRKKRAKEGRSTDE 621

Query: 359  IEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQKVVVED 180
            +EH+                +ELK++G Y  S+G + + KRR  D ED L R QK     
Sbjct: 622  VEHFPAPSRVTVRRRSTVSAIELKDAGDY--SRGALSNLKRRGFDNEDALERPQK-RGRH 678

Query: 179  QDMDQSSGAEYDSSD 135
            QD+D+ SGAE D SD
Sbjct: 679  QDVDEYSGAEDDLSD 693


>ref|XP_011080439.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Sesamum
            indicum]
          Length = 698

 Score =  629 bits (1621), Expect = e-177
 Identities = 373/739 (50%), Positives = 440/739 (59%), Gaps = 11/739 (1%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQ----ANQYSQNWG-YSGGDGSSFSH 2154
            MASYRP  PP QSTF                   Q    +NQYSQNWG YSG +GS+++ 
Sbjct: 1    MASYRPFHPPPQSTFAPPPPPPPNQNPLQPPAPPQPSRGSNQYSQNWGPYSGNEGSNYNQ 60

Query: 2153 NYNQTHPNSSFQHGGYGTSSS--QHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1980
            NY+QT+P+S++   GYG+SSS  QH+                                  
Sbjct: 61   NYSQTNPSSNYPGSGYGSSSSQQQHFNPPARNPLPPPPQQQSFPYQPPPPPPPPESSSYP 120

Query: 1979 XXXXXXXXXXXXXXXSMNLQPQPASAP-MYYPSSQYSQFNHQLLQXXXXXXXXXXXXXXX 1803
                                PQ A+AP MYYPSSQYSQFN                    
Sbjct: 121  PPPPP---------------PQQAAAPPMYYPSSQYSQFNQP------------------ 147

Query: 1802 XXXXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGA-LRKQH 1626
                              P   Q     P    G P  ++    RE    N GA ++K+ 
Sbjct: 148  PPLQPPPPPPPPSSPPPPPPPSQPLSPPPLPSAGPPAGMS----RENRQPNPGASVKKEQ 203

Query: 1625 KPPVPLVPAKKT-NGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQM 1449
            KPP+PL   K + +G  GR+ET                          ESQN VLQKTQM
Sbjct: 204  KPPLPLSGRKSSGHGQLGRVETEEERRIRKKREYEKQKQEEKLKQHLRESQNKVLQKTQM 263

Query: 1448 ISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLL 1269
            ++SG KGH SISGS MG+RR+T LLSG+R+ENRLKKPTTFLCKLKFRNELPDP+A+ KLL
Sbjct: 264  LASGAKGHGSISGSHMGDRRSTPLLSGDRVENRLKKPTTFLCKLKFRNELPDPSAKMKLL 323

Query: 1268 SLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXX 1089
            +L+R+ DR  KY +TSLEK  KPQLYVE           LSVYNPPKG+R          
Sbjct: 324  TLKRDPDRYCKYQITSLEKNWKPQLYVEPDLGIPLDLLDLSVYNPPKGERIPLDPEDEEL 383

Query: 1088 XXXXXPVTPIKRDGIKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKG 909
                 P+TPIK DGIK+K+RPTDKGVSWLVKTQYIS LS ++TKQSLTEKQAKELRE +G
Sbjct: 384  LHDDDPITPIKADGIKKKDRPTDKGVSWLVKTQYISPLSMDSTKQSLTEKQAKELRESRG 443

Query: 908  GRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAA 729
             RN+LEN NSRERKI+ I ASFEACKS+PVHA N  LQP  +LPLLPDFDRYDDQFV+A 
Sbjct: 444  -RNLLENLNSRERKIKDIVASFEACKSKPVHAVNPQLQPKRVLPLLPDFDRYDDQFVVAN 502

Query: 728  FDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDM 549
            FD+APTADSE Y KL  + RD +E++AIMKS+V++ SD+ KP KFLAYM PS DEL KDM
Sbjct: 503  FDSAPTADSEIYRKLSAAERDEYENRAIMKSYVSSSSDAEKPYKFLAYMVPSVDELEKDM 562

Query: 548  YDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKS 369
            YDE EDISYSW+REYHWDVRGDD DDPTTYL+ FGE+EA+Y PLPTKLILRKKRA EGKS
Sbjct: 563  YDENEDISYSWVREYHWDVRGDDVDDPTTYLMTFGETEAKYLPLPTKLILRKKRAREGKS 622

Query: 368  SDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLS-SKRRRVDTEDGLGRQQKV 192
             DE+EH+                VEL+E G Y  SK      S R  +D  DG  R+   
Sbjct: 623  GDEVEHFPAPKRVTVRRRSTAAAVELREEGDYVASKSSNRGRSGRGGMDGSDGRLRR--- 679

Query: 191  VVEDQDMDQSSGAEYDSSD 135
            +V+D D D  SGAE D S+
Sbjct: 680  IVQDADADNYSGAEDDMSE 698


>ref|XP_008462415.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated factor 1
            homolog [Cucumis melo]
          Length = 705

 Score =  629 bits (1621), Expect = e-177
 Identities = 372/740 (50%), Positives = 438/740 (59%), Gaps = 12/740 (1%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQ-------YSQNWGYSGGDGS-- 2166
            MASYRP PP  QS+F                    + Q       Y+QNWG   GD S  
Sbjct: 1    MASYRPYPP--QSSFGSAPAQNSIPPPPSQSASASSQQRGGATTQYNQNWGAYAGDASVP 58

Query: 2165 -SFSHNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1989
             + S +Y Q + N   Q   Y     Q YG                              
Sbjct: 59   PAPSSSYPQNYNNQLHQTSNY---HHQQYGTPRTQHPPPPPPHQSYPYAPQPPPPPPPDS 115

Query: 1988 XXXXXXXXXXXXXXXXXXSMNLQPQPASAP-MYYPSSQYSQFNHQLLQXXXXXXXXXXXX 1812
                                   P P+  P +YYPSSQYSQ N                 
Sbjct: 116  SYPPPPPP---------------PAPSQPPNLYYPSSQYSQGNQNQQSMQPPPPPSSPPP 160

Query: 1811 XXXXXXXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGALRK 1632
                                    G+N  +  + +KGV KD +  R R+  +SN    +K
Sbjct: 161  SSSIPPPPPPNSPPPPSASQQKAEGKNMGAH-ERDKGVSKDPSYGR-RDRENSNHDKHQK 218

Query: 1631 QHKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQ 1452
               PP+P    KK NGPSGR+ET                          ESQNT+LQKTQ
Sbjct: 219  HSGPPMP---PKKANGPSGRMETDDEKKLRKKREFEKQRQDERHRHHLKESQNTILQKTQ 275

Query: 1451 MISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKL 1272
            M+S+G K H SI GS MGER+ T  LSGERIENRLKKPTTFLCKLKFRNELPD +AQPKL
Sbjct: 276  MLSTG-KVHGSIVGSRMGERKATPFLSGERIENRLKKPTTFLCKLKFRNELPDTSAQPKL 334

Query: 1271 LSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXX 1092
            +SLR+EKD  T+Y++TSLEK +KPQLYVE           LSVYNPP   R         
Sbjct: 335  MSLRKEKDHYTRYTITSLEKTYKPQLYVEPDLGIPLDLLDLSVYNPPS-VRVPLAPEDEE 393

Query: 1091 XXXXXXPVTPIKRDG-IKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELREI 915
                    TP+K+DG IKRKERPTDKGV+WLVKTQYIS LS E+TKQSLTEKQAKELRE+
Sbjct: 394  LLRDDVLKTPVKKDGGIKRKERPTDKGVAWLVKTQYISPLSIESTKQSLTEKQAKELREM 453

Query: 914  KGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVI 735
            KGGRNILEN N+RER+I++IEASFEACKS+P+HATN NL PVE+LPLLPDFDRYDD FV+
Sbjct: 454  KGGRNILENLNNRERQIKEIEASFEACKSRPIHATNKNLYPVEVLPLLPDFDRYDDPFVV 513

Query: 734  AAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSK 555
             AFD+APTADSET++KLD+S+RDAHESQAIMKS++ATGSD +KPEKFLAYM PSPDELSK
Sbjct: 514  VAFDSAPTADSETFNKLDQSIRDAHESQAIMKSYMATGSDPSKPEKFLAYMVPSPDELSK 573

Query: 554  DMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAAEG 375
            D+YDE+ED+SYSW+REYHWDVRGD+ DDPTTYLV+F +SEARY PLPTKL+L KKRA EG
Sbjct: 574  DIYDEQEDVSYSWVREYHWDVRGDNVDDPTTYLVSFDDSEARYVPLPTKLVLXKKRAKEG 633

Query: 374  KSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQK 195
            +SSDE+EH+                +E+K+ G YS SK        R  D EDG+GR  K
Sbjct: 634  RSSDEVEHFPAPARVTVRRRPTVATLEVKDPGIYSNSK--------RGSDIEDGIGRLHK 685

Query: 194  VVVEDQDMDQSSGAEYDSSD 135
                 QDMDQ SGAE + SD
Sbjct: 686  HDRHHQDMDQYSGAEDEMSD 705


>ref|XP_008228451.1| PREDICTED: bromodomain-containing protein 4 [Prunus mume]
          Length = 658

 Score =  625 bits (1611), Expect = e-176
 Identities = 324/534 (60%), Positives = 387/534 (72%)
 Frame = -2

Query: 1736 QNKESRPDGEKGVPKDVTGSRWREPGHSNQGALRKQHKPPVPLVPAKKTNGPSGRIETXX 1557
            QN +     +KG  ++V+ S  RE GH N G  +KQHKPPVP +P KK NGP GR+ET  
Sbjct: 130  QNSQYSQYNDKGASREVSVSGRREHGHLNHGVAQKQHKPPVPSMPVKKANGPPGRVETEE 189

Query: 1556 XXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQKTQMISSGMKGHVSISGSCMGERRTTTL 1377
                                    +SQN+VLQKTQM+SSG KGH SI+GS MGERR T  
Sbjct: 190  ERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQKTQMLSSG-KGHGSIAGSRMGERRATPF 248

Query: 1376 LSGERIENRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRREKDRLTKYSVTSLEKLHKPQ 1197
            LS ER ENRLKKPTTF+CKLKFRNELPDP+AQPKL+SL+++KD+ TKY++TSLEK +KP+
Sbjct: 249  LSSERTENRLKKPTTFVCKLKFRNELPDPSAQPKLMSLKKDKDQYTKYTITSLEKTYKPK 308

Query: 1196 LYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXXXXPVTPIKRDGIKRKERPTDK 1017
            L+VE           LSVYNPP   R                 TP+K +GI+RKERPTDK
Sbjct: 309  LFVEPDLGIPLDLLDLSVYNPPS-VRPPLALEDEELLRDDVAATPVKNNGIRRKERPTDK 367

Query: 1016 GVSWLVKTQYISSLSTEATKQSLTEKQAKELREIKGGRNILENFNSRERKIQQIEASFEA 837
            GV+WLVKTQYIS LS ++ +QSLTEKQAKELRE+KGGRNIL N N RER+I++IEASFEA
Sbjct: 368  GVAWLVKTQYISPLSMDSARQSLTEKQAKELREMKGGRNILNNLNDRERQIKEIEASFEA 427

Query: 836  CKSQPVHATNSNLQPVEILPLLPDFDRYDDQFVIAAFDNAPTADSETYSKLDKSVRDAHE 657
            CKS+PVHATN NL PVE+LPLLPDF+RY+DQFV+AAFD APTADSE YSKLD+S  DA+E
Sbjct: 428  CKSRPVHATNKNLYPVEVLPLLPDFERYEDQFVLAAFDGAPTADSEIYSKLDQSGHDAYE 487

Query: 656  SQAIMKSFVATGSDSAKPEKFLAYMAPSPDELSKDMYDEREDISYSWIREYHWDVRGDDA 477
            S+AIMKS+  TG+D A PEKFLAYM PSP+ELSKD YDE ED+SYSW+REYH+DVRGDD 
Sbjct: 488  SRAIMKSYKVTGADPANPEKFLAYMVPSPNELSKDPYDESEDVSYSWVREYHYDVRGDDV 547

Query: 476  DDPTTYLVAFGESEARYAPLPTKLILRKKRAAEGKSSDEIEHYXXXXXXXXXXXXXXXXV 297
             DPTTYLV+F E EARYAPLPTKLILRKKR+ EGK+SDE+EH+                +
Sbjct: 548  HDPTTYLVSFDEEEARYAPLPTKLILRKKRSKEGKTSDEVEHFPAPSRVTVRQRSTVAAI 607

Query: 296  ELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQQKVVVEDQDMDQSSGAEYDSSD 135
            ELK+SG Y  S+G + + K RR D ED L R +K +   QD+D+ SGAE D SD
Sbjct: 608  ELKDSGDY--SRGSVSNLKTRRFDVEDTLERPRK-IARHQDIDEYSGAEDDLSD 658


>ref|XP_004141783.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Cucumis
            sativus] gi|700190348|gb|KGN45581.1| hypothetical protein
            Csa_7G452360 [Cucumis sativus]
          Length = 706

 Score =  621 bits (1601), Expect = e-174
 Identities = 370/742 (49%), Positives = 437/742 (58%), Gaps = 14/742 (1%)
 Frame = -2

Query: 2318 MASYRPLPPPQQSTFVXXXXXXXXXXXXXXXXXXQANQ-------YSQNWGYSGGDGSSF 2160
            MASYRP PP  QS+F                    + Q       Y+QNWG   GD S+ 
Sbjct: 1    MASYRPYPP--QSSFGSAPAQNSIPPPSAQSASVSSQQRGGATTQYNQNWGTYAGDASAP 58

Query: 2159 ---SHNYNQTHPNSSFQHGGYGTSSSQHYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1989
               S +Y Q + N   Q   Y     Q YG                              
Sbjct: 59   PAPSSSYPQNYNNQLHQTSNY---HHQQYGPPRTQHPPPPPPPPHQSYPYAPQPPPPPPP 115

Query: 1988 XXXXXXXXXXXXXXXXXXSMNLQPQPASAP---MYYPSSQYSQFNHQLLQXXXXXXXXXX 1818
                                   P PA++    +YYPSSQYSQ N               
Sbjct: 116  DSSYPPPP---------------PPPATSQPPNLYYPSSQYSQGNQNQQSMQPPPPPSSP 160

Query: 1817 XXXXXXXXXXXXXXXXXXXXXXXPTVGQNKESRPDGEKGVPKDVTGSRWREPGHSNQGAL 1638
                                      G N  +  + +KGVPKD +  R R+  +SN    
Sbjct: 161  PPSSSIPPPPPPNSPPPPSASQQKAEGTNMGAH-ERDKGVPKDPSYGR-RDRENSNHDKH 218

Query: 1637 RKQHKPPVPLVPAKKTNGPSGRIETXXXXXXXXXXXXXXXXXXXXXXXXXXESQNTVLQK 1458
            +K   PP+P    KK NGPSGR+ET                          ESQNT+LQK
Sbjct: 219  QKHSGPPMP---PKKANGPSGRMETDDEKRLRKKREFEKQRQDERHRHHLKESQNTILQK 275

Query: 1457 TQMISSGMKGHVSISGSCMGERRTTTLLSGERIENRLKKPTTFLCKLKFRNELPDPTAQP 1278
            TQM+S+G K H SI GS MGER+ T  LSGERIENRLKKPTTFLCKLKFRNELPD +AQP
Sbjct: 276  TQMLSTG-KVHGSIVGSRMGERKATPFLSGERIENRLKKPTTFLCKLKFRNELPDTSAQP 334

Query: 1277 KLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXXXXXXXXXXLSVYNPPKGKRXXXXXXX 1098
            KL+SLR+EKD  T+Y++TSLEK +KPQLYVE           LSVYNP    R       
Sbjct: 335  KLMSLRKEKDHYTRYTITSLEKTYKPQLYVEPDLGIPLDLLDLSVYNP-SSVRMPLAPED 393

Query: 1097 XXXXXXXXPVTPIKRDG-IKRKERPTDKGVSWLVKTQYISSLSTEATKQSLTEKQAKELR 921
                      TP+K+DG IKRKERPTDKGV+WLVKTQYIS LS E+ KQSLTEKQAKELR
Sbjct: 394  EELLRDDVLKTPVKKDGGIKRKERPTDKGVAWLVKTQYISPLSIESAKQSLTEKQAKELR 453

Query: 920  EIKGGRNILENFNSRERKIQQIEASFEACKSQPVHATNSNLQPVEILPLLPDFDRYDDQF 741
            E+KGGRNILEN N+RER+I++IEASFEACKS+P+HATN NL PVE+LPLLPDFDRYDD F
Sbjct: 454  EMKGGRNILENLNNRERQIKEIEASFEACKSRPIHATNKNLYPVEVLPLLPDFDRYDDPF 513

Query: 740  VIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKSFVATGSDSAKPEKFLAYMAPSPDEL 561
            V+ AFD+APTADSET++KLD+S+RDAHESQAIMKS++AT SD +KPEKFLAYM PSPDEL
Sbjct: 514  VVVAFDSAPTADSETFNKLDQSIRDAHESQAIMKSYMATSSDPSKPEKFLAYMVPSPDEL 573

Query: 560  SKDMYDEREDISYSWIREYHWDVRGDDADDPTTYLVAFGESEARYAPLPTKLILRKKRAA 381
            SKD+YDE+ED+SYSW+REYHWDVRGD+ DDPTTYLV+F ++EARY PLPTKL+LRKKRA 
Sbjct: 574  SKDIYDEQEDVSYSWVREYHWDVRGDNVDDPTTYLVSFDDAEARYVPLPTKLVLRKKRAK 633

Query: 380  EGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGSYSGSKGDMLSSKRRRVDTEDGLGRQ 201
            EG+SSDE+EH+                +E+K+ G YS SK        R  D EDG+GR 
Sbjct: 634  EGRSSDEVEHFPAPARVTVRRRPTVATLEVKDPGIYSNSK--------RGSDIEDGIGRS 685

Query: 200  QKVVVEDQDMDQSSGAEYDSSD 135
             K     QDMDQ SGAE + SD
Sbjct: 686  HK-HDRHQDMDQFSGAEDEMSD 706


>ref|XP_006465692.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X1
            [Citrus sinensis]
          Length = 576

 Score =  619 bits (1596), Expect = e-174
 Identities = 326/527 (61%), Positives = 382/527 (72%)
 Frame = -2

Query: 1715 DGEKGVPKDVTGSRWREPGHSNQGALRKQHKPPVPLVPAKKTNGPSGRIETXXXXXXXXX 1536
            D +K   K+V+     +PGHS      KQH+PPVP    KK NG SGR+ET         
Sbjct: 61   DHDKRASKEVSR---HDPGHS------KQHRPPVPPPGVKKVNGGSGRVETEEERRVRKK 111

Query: 1535 XXXXXXXXXXXXXXXXXESQNTVLQKTQMISSGMKGHVSISGSCMGERRTTTLLSGERIE 1356
                             ESQN V+QK+QM++SG  GH S++GS MG+RR   LLSGERIE
Sbjct: 112  REYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMAGSRMGDRRAAPLLSGERIE 171

Query: 1355 NRLKKPTTFLCKLKFRNELPDPTAQPKLLSLRREKDRLTKYSVTSLEKLHKPQLYVEXXX 1176
            NRLKKPTTFLCKLKFRNELP+P+AQPKL++L+++KDR T+Y+ +SLEK +KPQL+VE   
Sbjct: 172  NRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDL 231

Query: 1175 XXXXXXXXLSVYNPPKGKRXXXXXXXXXXXXXXXPVTPIKRDGIKRKERPTDKGVSWLVK 996
                    LSVYNPP   R                VTP+K+DGIKRKERPTDKGVSWLVK
Sbjct: 232  GIPLDLLDLSVYNPPS-VRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVK 290

Query: 995  TQYISSLSTEATKQSLTEKQAKELREIKGGRNILENFNSRERKIQQIEASFEACKSQPVH 816
            TQYIS LS E+ +QSLTEKQAKELRE+KGGR+ILEN N RER+I++IEASFEACK +P+H
Sbjct: 291  TQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEACKLRPIH 350

Query: 815  ATNSNLQPVEILPLLPDFDRYDDQFVIAAFDNAPTADSETYSKLDKSVRDAHESQAIMKS 636
            ATN NLQPVEILPLLPDF+RYDDQFV A FD APTADSE YSK+DKSVRDAHES+AIMKS
Sbjct: 351  ATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKS 410

Query: 635  FVATGSDSAKPEKFLAYMAPSPDELSKDMYDEREDISYSWIREYHWDVRGDDADDPTTYL 456
            +VATGSDSA PEKFLAYM PS +ELSKDMYDE ED+S+SW+REYHWDVRGDDADDPTTYL
Sbjct: 411  YVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDDADDPTTYL 470

Query: 455  VAFGESEARYAPLPTKLILRKKRAAEGKSSDEIEHYXXXXXXXXXXXXXXXXVELKESGS 276
            V+F + EARY PLPTKL LRKKRA EG+S+DE+EH+                +ELKE G+
Sbjct: 471  VSFDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAIELKEQGA 530

Query: 275  YSGSKGDMLSSKRRRVDTEDGLGRQQKVVVEDQDMDQSSGAEYDSSD 135
            YS SKG+  SSK  RVD+++ L R        QD  QSSGAE D  D
Sbjct: 531  YSNSKGNSSSSKMGRVDSQEDLERSHN-GSRHQDPYQSSGAEDDMYD 576