BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00002398
         (6219 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004659200.1| replication-associated polyprotein [Blackber...   125   7e-25
gb|AHB87051.1| putative RNA replicase, partial [Escobaria virus]      124   1e-24
gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Z...   117   1e-22
ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp...   116   2e-22
gb|AHB59866.1| replicase [Narcissus mosaic virus]                     115   4e-22
gb|ALM62223.1| RNA-dependent RNA polymerase [Soybean-associated ...   113   2e-21
gb|AFV61767.1| replicase [Garlic virus X]                             112   4e-21
gb|AGE84283.1| replicase-associated protein, partial [Culex orig...   107   1e-19
ref|YP_006843893.1| replicase-associated protein [Culex originat...   107   1e-19
ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|s...   105   4e-19
ref|NP_047920.1| replicase protein [Erysimum latent virus] gi|54...   102   5e-18
gb|AHL25284.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    98   1e-16
ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9D...    95   7e-16
ref|YP_004464930.1| unnamed protein product [Bombyx mori Macula-...    94   1e-15
dbj|BAD35017.1| RNA-dependent RNA polymerase [Bombyx mori Macula...    93   4e-15
gb|AHX22590.1| RNA-dependent RNA polymerase [Bombyx mori Macula-...    91   1e-14
ref|NP_112029.1| RNA-dependant RNA polymerase [Banana mild mosai...    91   1e-14
gb|AFV73358.1| 195 kDa replicase [Grapevine virus A]                   91   2e-14
ref|YP_002308439.1| polyprotein [Scrophularia mottle virus] gi|5...    90   3e-14
ref|NP_067737.1| replication protein [Chayote mosaic virus] gi|6...    89   5e-14

>ref|YP_004659200.1| replication-associated polyprotein [Blackberry virus E]
            gi|336139487|gb|AEI17897.1| replication-associated
            polyprotein [Blackberry virus E]
          Length = 1499

 Score =  125 bits (313), Expect = 7e-25
 Identities = 174/719 (24%), Positives = 275/719 (38%), Gaps = 14/719 (1%)
 Frame = -2

Query: 2552 TYTADLGRAARLVSDLKAHPSVLESFQSPAVLQSLD-NILD--LHRLEGSSRTVRVRAYF 2382
            +Y  D  RA   +SD+K + + L       VL  LD NIL   +   E S RTV V    
Sbjct: 685  SYVLDNKRATAYMSDVKNNLTGL-------VLPKLDRNILSAWVSLAECSKRTVSVLVIH 737

Query: 2381 GIWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAI 2202
            G  G GK+ A +  L+    +V     ++  T +L    K+ L  PE+   +F T   A 
Sbjct: 738  GAGGAGKSRAIQEMLRN-HGEVADNTNVVVPTVNLVLDWKSKL--PEVDPKHFMTFEKAC 794

Query: 2201 TEPCSGPVVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSP 2022
                   V+FDD GK   G +D  +   P +  V++ GD  Q +        Q+    + 
Sbjct: 795  EREGKEVVIFDDYGKLPAGYIDAYLSIKPTVETVILTGDQRQSVHHATNREAQTANLKTN 854

Query: 2021 IACLAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGV 1842
            +   +     Y   THR    LA+   VH    + G +   N       V   S      
Sbjct: 855  VQHFSRYCDYYVNATHRQPQRLANPIQVHAERKTGGAVHRANLIPDTATVLVPSFTTQQS 914

Query: 1841 LAAGGRQAYTYASVQGEDFKEDMEV--DMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMD 1668
            L   GR+A  Y+  QG        V  + T L  + +  +A+     S T V  H D  D
Sbjct: 915  LNGLGRRALAYSGCQGLTLPHVTIVLDNDTPLCSNEVLYTAFSRAPESITFVNTHSDHPD 974

Query: 1667 PDSRTRSSPTGSVLMNALICAVRSGGSASLLQPSALVKSAFYRHLEWSMPSLPWFSRIGA 1488
              ++  S+P     +  L+  VR    A    P                           
Sbjct: 975  FLAKLDSTP----YLKTLLSGVREDEQAGKDDP--------------------------- 1003

Query: 1487 SVAASEYQSVFPAVEAHGLEESDPVDPVAGDHVITAGPPVEEICREVHFHAKEARELPGP 1308
                              L + +  +P+   H+  A        +      K+ REL   
Sbjct: 1004 ------------------LPKPEVREPMIKTHLPVANLETYLEDKVEQMEDKDTRELWDG 1045

Query: 1307 GGATD--QFKD-VAFVNPHVHKRADTTTYQLSVAKRLTPQSPAANAERMLRCPRTD--LC 1143
               T+  Q +D V  + PH   + D   ++L++ +R+   +PA N++ +    +    L 
Sbjct: 1046 KEKTNLMQTQDPVVQLFPHQQAK-DEALFKLTIEQRIRTATPAENSKSVQHTLQAGDLLF 1104

Query: 1142 EEYDRL--VPRAPQWTAAKFEQYCER-AVNEYAAKRSHSAVIAKLRAHDPTRTAADIIIS 972
            E Y     VP+ PQ       ++C++ A+  Y +K  ++    K R  DP      I + 
Sbjct: 1105 EAYSDFMRVPKEPQTFNPDLWEHCKQLALRTYVSKPRNNLEQGKTR-QDPDFPENAIALF 1163

Query: 971  LKNQIIKKDEKRN-KVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRM 795
             K+Q +KK EK   K +A  GQ I  +     L     AL+L  + +   P N       
Sbjct: 1164 NKSQWVKKLEKVGFKFKA--GQTISAFKQSTVLLTTTMALYLRKKRLEHQPQNVFIMCEK 1221

Query: 794  NPDQFIAAYQKRWRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERR 615
             P +F      RW      +TSD T++D   D   LNF+    R  G PE+ +  Y   +
Sbjct: 1222 TPAEFNDFVLNRWDFKTPSYTSDYTQYDQSQDAAFLNFELRKARHLGVPEEVLDFYKFIK 1281

Query: 614  LSSRSRHGNMATMQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAIDRYCD 438
            + +++  GN+A M+ SG+  T+  N+       +L   + P       GDD   D+ CD
Sbjct: 1282 IHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFKLAPTVNACYAGDDLVRDQVCD 1340


>gb|AHB87051.1| putative RNA replicase, partial [Escobaria virus]
          Length = 851

 Score =  124 bits (310), Expect = 1e-24
 Identities = 182/759 (23%), Positives = 285/759 (37%), Gaps = 28/759 (3%)
 Frame = -2

Query: 2552 TYTADLGRAARLVSDLKAHPSVLESFQSPAVLQSLDN---ILDLHRLEGSSRTVRVRAYF 2382
            TY  +  RA   +SD+K   + L       +L  LD       L   E + R V +    
Sbjct: 34   TYRNNQARATAYMSDVKNGLTGL-------LLPKLDRDKLAAWLSLCEQADREVALLVIH 86

Query: 2381 GIWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAI 2202
            G  G GK+ A +  L+  +PD+     ++  T  L    KA +   + R   F T   A 
Sbjct: 87   GAGGAGKSRALQQMLRD-NPDLAENTNVVVPTVGLVMDWKAKMTTIDPR--RFMTFEKAC 143

Query: 2201 TEPCSGPVVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSP 2022
                   V+FDD GK   G +D  +   P    V++ GD  Q +        QS    S 
Sbjct: 144  EREGKEVVIFDDYGKLPAGFIDAYLSIKPSTRVVILTGDQRQSVYHTTNREAQSATLESN 203

Query: 2021 IACLAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGV 1842
                A     Y   THR    LA+   VH      G + H+        V   + R    
Sbjct: 204  TTFFAKWCDYYLNATHRQPRRLANPIKVHAEKQEGGAVRHSTLIGDRDTVLVPAHRSQVA 263

Query: 1841 LAAGGRQAYTYASVQGEDFKEDMEV--DMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMD 1668
            L   GR+AYTY+  QG        V  + T L  + +  + +   + S T V  + D  D
Sbjct: 264  LTDLGRKAYTYSGCQGLTLPHITIVLDNDTPLCSTEVLYTVFSRASESITFVNTYSDNPD 323

Query: 1667 PDSRTRSSPTGSVLMNALICAVRSGGSASLLQPSALVKSAFYRHLEWSMPSLPWFSRIGA 1488
              S+  ++P     +  LI  VR   +A   Q                            
Sbjct: 324  FLSKLDATP----YLKTLISGVREDENAGKTQK--------------------------- 352

Query: 1487 SVAASEYQSVFPAVEAHGLEESDPVDPVAGDHVITAGPPVE--EICREVHFHAKEARELP 1314
                              +EE +  +P    H+     PVE  ++  E      E ++  
Sbjct: 353  ------------------IEEPEVAEPPVKTHL-----PVENQDVFLEEKIEVMEDKDTR 389

Query: 1313 GPGGATDQFKDVAFVNPHV----HKRA-DTTTYQLSVAKRLTPQSPAANAERMLRCPRTD 1149
                  ++   +   NP V    H++A D   +++++ +R+   SP  N ++++   R  
Sbjct: 390  ELWDGEEKTNLMQTENPIVQLFPHQQAKDEALFKITIEQRIRTASPEENVKQLVDKLRVG 449

Query: 1148 --LCEEYDRL--VPRAPQWTAAKFEQYCER-AVNEYAAKRSHSAVIAKLRAHDPTRTAAD 984
              L E Y     VPR PQ    +  ++C + A   Y +K  ++ V    R  DP      
Sbjct: 450  DLLFEAYADFMKVPREPQNFDLELWRHCRQLAERTYLSKPKNNLVQGAAR-QDPDFPDNA 508

Query: 983  IIISLKNQIIKKDEKRN-KVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIF 807
            I +  K+Q +KK +K   K +A  GQ I  +     L     AL+L  +     PDN   
Sbjct: 509  IALFNKSQWVKKLDKVGFKFKA--GQTISAFKQQTVLLTTTLALYLRKKREQHQPDNVFI 566

Query: 806  YRRMNPDQFIAAYQKRWRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAY 627
                 P+QF      RW  +   +TSD T++D   D   LNF+    R  G PE+ V  Y
Sbjct: 567  MCEKTPEQFNEFVINRWNFDRPAYTSDYTQYDQSQDACFLNFELRKARHLGVPEEVVNFY 626

Query: 626  VERRLSSRSRHGNMATMQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAIDR 447
               + ++++  GN+A M+ SG+  T+  N+       +L   +         GDD   D+
Sbjct: 627  RFIKTNAKTFVGNLAVMRLSGEGPTFDANTECNIAYDALRFQLNDDVQACYAGDDIVRDQ 686

Query: 446  YCDSDFFPDSP-WEF---------KNLNGPRGEFSGFEL 360
             C     P+ P W +         K L   R +F G+ L
Sbjct: 687  AC-----PERPSWRYTQHAFQLQAKPLVTSRPDFCGWRL 720


>gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Zealand]
          Length = 1643

 Score =  117 bits (294), Expect = 1e-22
 Identities = 169/750 (22%), Positives = 285/750 (38%), Gaps = 26/750 (3%)
 Frame = -2

Query: 2531 RAARLVSDLKAHPSVLESFQSPAVLQSLDN---ILDLHRLEGSSRTVRVRAYFGIWGCGK 2361
            RA    SD+K +       ++  +L  +DN       ++L+   R V      G  G GK
Sbjct: 822  RAGSYASDIKNN-------RTGKLLPQMDNKWKAAFAYKLQQEDRKVCGTIIHGCGGSGK 874

Query: 2360 TTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAITEPCSGP 2181
            + A + +++ L  D +    +++ T  LR   +  L  P L    F T   ++ +PC+  
Sbjct: 875  SFAIQEWMRSLKED-QSVVTVVTPTVLLRNDWQTKL--PILPADVFKTFEKSVIQPCNPI 931

Query: 2180 VVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPM 2001
            +VFDD  K   G+++ +++ +  +  +++ GD  Q +     +       P      +P 
Sbjct: 932  LVFDDYTKLPPGLIESVVMHHQNVVFIILTGDNRQSVYHETNSEAYIAALPEATEIFSPY 991

Query: 2000 VTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAG--VPVCTASPRYAGVLAAGG 1827
               Y   THR    LA+  GV++    +  +   +  +    +P+   S      +   G
Sbjct: 992  CEFYLNATHRNVKDLANKLGVYSEREGKLKVNFASHHLKASRIPMLVPSTMKRNAMFDMG 1051

Query: 1826 RQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMDPDSRTRS 1647
              + TYA  QG    + +++ +        +R  Y  L+R          A+D      +
Sbjct: 1052 HHSMTYAGCQGLTAPK-IQILLDNHTQFCSERVLYTCLSR----------AVDTIHFINT 1100

Query: 1646 SPTGSVLMNALICAVRSGGSASLLQPSALVKSAFYRHLEWSMPSLPWFSRIGASVAASEY 1467
             PT                              ++  LE S P L  F           Y
Sbjct: 1101 GPT---------------------------TGDYWAKLE-STPYLKAFIDTYRDEKTEVY 1132

Query: 1466 QSVFPAVEAHGLEESDPVDPVA-GDHVITAGPPVEEICREVHFHAKEARELPGPG-GATD 1293
             S  PA        ++P +P A   H  TA  P+ E   E     KEARE+  P  G ++
Sbjct: 1133 NSQ-PA-------SAEPTEPEAPATHFPTAPKPLLEPLVE-KLTDKEAREIFSPAFGYSN 1183

Query: 1292 QFK-DVAFVNPHVHKRA-DTTTYQLSVAKRLTPQSPAANAER--MLRCPRTDLCEEYDRL 1125
              + + + V    H++A D T Y  ++  RL   +P AN     M R     L   Y +L
Sbjct: 1184 AIQTEDSVVQLFQHQQAKDETLYWATIDTRLAISTPEANLREFNMKRDIGDILFMNYSKL 1243

Query: 1124 VPRAPQWTAAKFEQY-----CERAVNEYAAKRSHSAVIAKLRAHDPTRTAADIIISLKNQ 960
            +   P+     FE+       +   N Y +K   + V A  R   P      I + LK+Q
Sbjct: 1244 MCLPPE--PVPFEERLWKISADEVRNTYISKPIGNLVNAAAR-QSPDFPKNKIALFLKSQ 1300

Query: 959  IIKKDEKRNKVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRMNPDQF 780
             +KK EK   ++  PGQ I  +     +     A +L        PDN        P+  
Sbjct: 1301 WVKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRRFQPDNIFINCETTPEDL 1360

Query: 779  IAAYQKRWRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERRLSSRS 600
                + +W  +   HT+D T +D   DG +L F+    +    P + +  Y+  +L++  
Sbjct: 1361 DKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNAAI 1420

Query: 599  RHGNMATMQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAIDRY-CDSDFF- 426
              G +  M+ SG+  T+  N+       +   H+T        GDD A+DR   + D F 
Sbjct: 1421 FLGTLGIMRLSGEGPTFDANTECSIAYNATRFHITDDTAQVYAGDDMALDRVSIEKDSFN 1480

Query: 425  --------PDSPWEFKNLNGPRGEFSGFEL 360
                       P   K + G   EF G+ L
Sbjct: 1481 RLEKQLKLTSKPMFPKQVKGDYAEFCGWVL 1510


>ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp|P15095.1|RDRP_NMV
            RecName: Full=RNA replication protein; AltName: Full=186
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222108|dbj|BAA02891.1| 186K
            protein [Narcissus mosaic virus]
          Length = 1643

 Score =  116 bits (291), Expect = 2e-22
 Identities = 164/738 (22%), Positives = 281/738 (38%), Gaps = 26/738 (3%)
 Frame = -2

Query: 2501 AHPSVLESFQSPAVLQSLDN---ILDLHRLEGSSRTVRVRAYFGIWGCGKTTATKAYLQG 2331
            ++ S +++ ++  +L  +DN       ++L+   R V      G  G GK+ A + +++ 
Sbjct: 825  SYDSDIKNNRTGKLLSQMDNKWKAAFAYKLQQEDRKVCGTIIHGCGGSGKSFAIQEWMRS 884

Query: 2330 LDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAITEPCSGPVVFDDAGKFW 2151
            L  D +    +++ T  LR   +  L  P L    F T   ++ +PC+  +VFDD  K  
Sbjct: 885  LKED-QSVVTVVTPTVLLRNDWQTKL--PILPADVFKTFEKSVIQPCNPILVFDDYTKLP 941

Query: 2150 GGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPMVTRYATVTHR 1971
             G+++ +++ +  +  +++ GD  Q +             P  +   +P    Y   THR
Sbjct: 942  PGLIESVVMHHQNVVFIILTGDNRQSVYHETNPEAYIAALPEAVEIFSPYCEFYLNATHR 1001

Query: 1970 GFGLLADTFGVHTTNPSRGHITHTNEPVAG--VPVCTASPRYAGVLAAGGRQAYTYASVQ 1797
                LA+  GV++    +  +   +  +    +P+   S      +   G  + TYA  Q
Sbjct: 1002 NVKDLANKLGVYSEREGKLKVNFASHHLKASRIPMLVPSTMKRNAMFDMGHHSMTYAGCQ 1061

Query: 1796 GEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMDPDSRTRSSPTGSVLMNA 1617
            G    + +++ +        +R  Y  L+R          A+D      + PT       
Sbjct: 1062 GLTAPK-IQILLDNHTQFCSERVLYTCLSR----------AVDRIHFINTGPT------- 1103

Query: 1616 LICAVRSGGSASLLQPSALVKSAFYRHLEWSMPSLPWFSRIGASVAASEYQSVFPAVEAH 1437
                                   ++  LE S P L  F           Y S  PA    
Sbjct: 1104 --------------------TGDYWAKLE-STPYLKAFIDTYRDEKTEVYNSQ-PA---- 1137

Query: 1436 GLEESDPVDPVA-GDHVITAGPPVEEICREVHFHAKEARELPGP--GGATDQFKDVAFVN 1266
                ++P +P A   H  TA  P+ E   E     KEARE+  P  G +     + + V 
Sbjct: 1138 ---SAEPTEPEAPATHFPTAPKPLLEPLVE-KLTDKEAREIFSPAFGHSNAIQTEDSVVQ 1193

Query: 1265 PHVHKRA-DTTTYQLSVAKRLTPQSPAANAER--MLRCPRTDLCEEYDRLVPRAPQWTAA 1095
               H++A D T Y  ++  RL   +P AN     M R     L   Y +L+   P+    
Sbjct: 1194 LFQHQQAKDETLYWATIDTRLAISTPEANLREFNMKRDIGDILFMNYAKLMCLPPE--PV 1251

Query: 1094 KFEQY-----CERAVNEYAAKRSHSAVIAKLRAHDPTRTAADIIISLKNQIIKKDEKRNK 930
             FE+       +   N Y +K   + V A  R   P      I + LK+Q +KK EK   
Sbjct: 1252 PFEERLWKISADEVRNTYISKPIGNLVNAASR-QSPDFPKNKIALFLKSQWVKKTEKLGT 1310

Query: 929  VEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRMNPDQFIAAYQKRWRV 750
            ++  PGQ I  +     +     A +L        PDN        P+      + +W  
Sbjct: 1311 LKVKPGQTIASFMQETVMLYGTMARYLRKMRRRFQPDNIFINCETTPEDLDKFIKSQWDF 1370

Query: 749  NNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERRLSSRSRHGNMATMQN 570
            +   HT+D T +D   DG +L F+    +    P + +  Y+  +L++    G +  M+ 
Sbjct: 1371 SRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNAAIFLGTLGIMRL 1430

Query: 569  SGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAIDRY-CDSDFF---------PD 420
            SG+  T+  N+       +   H+T        GDD A+DR   + D F           
Sbjct: 1431 SGEGPTFDANTECSIAYNATRFHITDDTAQVYAGDDMALDRVSIEKDSFNRLEKQLKLTS 1490

Query: 419  SPWEFKNLNGPRGEFSGF 366
             P   K + G   EF G+
Sbjct: 1491 KPMFPKQVKGDYAEFCGW 1508


>gb|AHB59866.1| replicase [Narcissus mosaic virus]
          Length = 1630

 Score =  115 bits (289), Expect = 4e-22
 Identities = 166/740 (22%), Positives = 281/740 (37%), Gaps = 26/740 (3%)
 Frame = -2

Query: 2501 AHPSVLESFQSPAVLQSLDN---ILDLHRLEGSSRTVRVRAYFGIWGCGKTTATKAYLQG 2331
            ++ S +++ ++  +L  +DN       ++L+   R V      G  G GK+ A + +++ 
Sbjct: 825  SYASDIKNNRTGKLLSQMDNKWKAAFAYKLQQEDRKVCGTIIHGCGGSGKSFAIQEWMRS 884

Query: 2330 LDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAITEPCSGPVVFDDAGKFW 2151
            L  D +    +++ T  LR   +  L  P L    F T   ++ +PC+  +VFDD  K  
Sbjct: 885  LKED-QSVVTVVTPTVLLRNDWQTKL--PILPADVFKTFEKSVIQPCNPILVFDDYTKLP 941

Query: 2150 GGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPMVTRYATVTHR 1971
             G+++ +++ +  +  +++ GD  Q +             P  +   +P    Y   THR
Sbjct: 942  PGLIESVVMHHQNVVFIILTGDNRQSVYHETNPEAYIAALPEAVEIFSPYCEFYLNATHR 1001

Query: 1970 GFGLLADTFGVHTTNPSRGHITHTNEPVAG--VPVCTASPRYAGVLAAGGRQAYTYASVQ 1797
                LA+  GV++    +  I   +  +    +P+   S      +   G  + TYA  Q
Sbjct: 1002 NVKDLANKLGVYSEREGKLKINFASHHLKASRIPMLVPSTMKRNAMFDMGHHSMTYAGCQ 1061

Query: 1796 GEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMDPDSRTRSSPTGSVLMNA 1617
            G    + +++ +        +R  Y  L+R          A+D      + PT       
Sbjct: 1062 GLTAPK-IQILLDNHTQFCSERVLYTCLSR----------AVDTIHFINTGPT------- 1103

Query: 1616 LICAVRSGGSASLLQPSALVKSAFYRHLEWSMPSLPWFSRIGASVAASEYQSVFPAVEAH 1437
                                   ++  LE S P L  F           Y S  PA    
Sbjct: 1104 --------------------TGDYWAKLE-STPYLKAFIDTYRDEKTEVYNSQ-PA---- 1137

Query: 1436 GLEESDPVDPVA-GDHVITAGPPVEEICREVHFHAKEARELPGP--GGATDQFKDVAFVN 1266
                ++P +P A   H  TA  P+ E   E     KEARE+  P  G +     + + V 
Sbjct: 1138 ---SAEPTEPEAPATHFPTAPKPLLEPLVE-QLADKEAREIFSPAFGHSNAIQTEDSVVQ 1193

Query: 1265 PHVHKRA-DTTTYQLSVAKRLTPQSPAANAER--MLRCPRTDLCEEYDRLVPRAPQWTAA 1095
               H++A D T Y  ++  RL   +P AN     M R     L   Y +L+   P+    
Sbjct: 1194 LFQHQQAKDETLYWATIDTRLAISTPPANLREFNMKRDIGDILFMNYAKLMCLPPE--PV 1251

Query: 1094 KFEQY-----CERAVNEYAAKRSHSAVIAKLRAHDPTRTAADIIISLKNQIIKKDEKRNK 930
             FE+       +   N Y +K   + V A  R   P      I + LK+Q  KK EK   
Sbjct: 1252 PFEERLWKISADEVRNTYISKPIGNLVNAASR-QSPDFPKNKIALFLKSQWGKKTEKLGT 1310

Query: 929  VEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRMNPDQFIAAYQKRWRV 750
            ++  PGQ I  +     +     A +L        PDN        P+      + +W  
Sbjct: 1311 LKVKPGQTIASFMQETVMLYGTMARYLRKMRRRFQPDNIFINCETTPEDLDKFIKSQWDF 1370

Query: 749  NNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERRLSSRSRHGNMATMQN 570
            +   HT+D T +D   DG +L F+    +    P + +  Y+  +L++    G +  M+ 
Sbjct: 1371 SRPAHTNDFTAFDQSQDGAMLQFEVIKAKIFNIPAEIIEGYIYIKLNAAIFLGTLGIMRL 1430

Query: 569  SGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAIDRY-CDSDFF---------PD 420
            SG+  T+  N+       +   H+T        GDD A+DR   + D F           
Sbjct: 1431 SGEGPTFDANTECSIAYNATRFHITDDTAQVYAGDDMALDRVSIEKDSFNRLEKQLKLTS 1490

Query: 419  SPWEFKNLNGPRGEFSGFEL 360
             P   K + G   EF G+ L
Sbjct: 1491 KPMFPKQVKGDYAEFCGWVL 1510


>gb|ALM62223.1| RNA-dependent RNA polymerase [Soybean-associated mycoflexivirus 1]
          Length = 2084

 Score =  113 bits (283), Expect = 2e-21
 Identities = 106/387 (27%), Positives = 166/387 (42%), Gaps = 29/387 (7%)
 Frame = -2

Query: 2606 AGYRDLFLPPVALAEEELTYTA---DLGRAARLVSDLKAHPSVLE--SFQSPAVLQSLDN 2442
            A  ++  LP V + +E + Y     D G A  L SD KA P+ L+   F      ++LD 
Sbjct: 1141 ARLQNFVLPAVPVQQEVIVYVPNARDAGYARALASDFKAKPAALDLTDFNPVDAARTLDQ 1200

Query: 2441 ILDLHRLEGSSRT------VRVRAYFGIWGCGKT---TATKAYLQGLDPDVRRQARIISH 2289
            +   +     + T      V    + G+ G GKT       A      P     A I+ H
Sbjct: 1201 MAKQYDNFVRNGTGLAYPNVTFHIFHGVGGGGKTHRMIQDLAIANAAKPFT--PADIMFH 1258

Query: 2288 TESLRAQAK------AGLDFPELRGFNFPTLASAITEPCSGPVVFDDAGKFWGGMLDLII 2127
            T     ++K      A L    L+  +F T    +  P +G VVFDD G  +   L L +
Sbjct: 1259 TADHNLRSKFMAEVIAALPNVGLQNNHFTTSCVPLVRPAAGTVVFDDVGLTFNSFLPLFM 1318

Query: 2126 LTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPMVTRYATVTHRGFGLLADT 1947
              NP +T++ +  D AQG    P A   S   P+    L+PM +RY T   R     AD 
Sbjct: 1319 ACNPGVTDIWLTFDCAQGQGVIPTANAISRSHPATKDWLSPMSSRYGTEMIRLSQDTADL 1378

Query: 1946 FG-----VHTTNPSRGHITHTNEPVAGVPVCTASPRYAGVLAAGGRQAYTYASVQGEDFK 1782
            +G     +      RG +T  ++    VP+   SPR+    + GG+ A T+   QG    
Sbjct: 1379 YGFPRVVIPGRIAPRGKVTVVSQSPHNVPLLAVSPRFTQTQSMGGQVANTFQECQGHTIH 1438

Query: 1781 EDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHM-DAMDPDSRTRSSPTGSVLMNALICA 1605
             D+ VD+ GL  +  D SA+ ALTR +   ++ +   M+  +   +S   S ++ AL+  
Sbjct: 1439 GDVCVDLGGLTATCTDTSAWTALTRPTGHTFLKLGPLMNTQAVVETSWAKSQILTALLTV 1498

Query: 1604 V---RSGGSASLLQPSALVKSAFYRHL 1533
                ++    + +    LV++A Y HL
Sbjct: 1499 ATIRQTPYVTAQMDVDGLVRTAVYSHL 1525



 Score =  106 bits (265), Expect = 2e-19
 Identities = 81/279 (29%), Positives = 123/279 (44%), Gaps = 5/279 (1%)
 Frame = -2

Query: 1085 QYCE-RAVNEYAAKRSHSAVIAKLRAHDPTRTAADIIISLKNQIIKKDEKRNKVEAIPGQ 909
            + CE   +  +A+KR+   ++A +   D         I  K Q IKK  K  +  A   Q
Sbjct: 1738 EQCEAEKLASWASKRTKKTLVASIAKQDLDMHYTFTRIFPKGQYIKKKAKW-RCNAFASQ 1796

Query: 908  LIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRMNPDQFIAAYQKRWRVNNGVHT- 732
             + ++ +     DAP ALFLE   +    D+   + R +PD   A Y+  W  + GV T 
Sbjct: 1797 TVSDFHLGRIFRDAPRALFLEKMALKHAYDSTYLHCRASPDDLSAWYRNHW--SPGVMTG 1854

Query: 731  SDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERRLSSRSRHGNMATMQNSGDRYT 552
            +D T WD G D   L FD  +M    FP +Y+  +   RL++ S  GN    Q SGDR+T
Sbjct: 1855 NDYTAWDSGIDHVFLEFDLWLMEVCHFPVEYLERFRYERLNTHSFLGNHMPRQESGDRWT 1914

Query: 551  WPLNSVRRAVVASLINHVTPADTVAINGDDE-AIDRYCDSDFFPDSPWEF--KNLNGPRG 381
            W LN++R A +            V I+GDD   +  +  +  F    W    K   G   
Sbjct: 1915 WILNTLRNAALTGASLDCPRKTPVCISGDDSVTLGSWRKTTGFNPGEWLMVPKREEGVTM 1974

Query: 380  EFSGFELGGPIPEYSARGIHYRTMILESRDPSAQNKWLN 264
            EF G   GG    +    +H+R+     +  +  + WL+
Sbjct: 1975 EFCGLIFGGSDVSFDPAVVHWRSRFGLQQGRADADYWLS 2013



 Score = 74.7 bits (182), Expect = 1e-09
 Identities = 72/330 (21%), Positives = 125/330 (37%), Gaps = 14/330 (4%)
 Frame = -2

Query: 5645 TLRREFFSGSPQEHAILNRHLLDYFKGRSRAQETTPYAIPSSQRHLLADLGMEQPQPDAP 5466
            +L   F++ SP +  IL+ H+  Y KG + A++  PY +P+  R LL + G+  P P A 
Sbjct: 172  SLDPNFYADSPLKSVILSMHMGAYGKGLASARQQCPYDVPTKLRPLLREAGISDPPPHAE 231

Query: 5465 EVPHGLHKSIEEGQLRRMRQYLSPGNYGIVSVKSSKTHLLPQAGS-----VQNPVYEAKD 5301
               H +H ++    +    + L  G +  +   + + + L   G+     V +P YE KD
Sbjct: 232  PHSHPVHYALRNKYMAMAAKSLQ-GQWYALFAGADRINYLRSCGASAPSGVFSPRYEGKD 290

Query: 5300 VSRYPGVGVKT-------VKLDAHPTYFLHDVSSEVSPHELVERLDSENPTGHLFVTGMN 5142
            ++RY G  V T             P +++ D    +S   +    D      ++  T + 
Sbjct: 291  ITRYKGQPVPTEGGLPQLEPSSLSPVWYVCDTLHHLSASVVGSWFDKNPTLEYVVATTII 350

Query: 5141 PVEVLDRANSFEPASHDIDYDLNGFNFVFAGSAAEAYFTPIDVTCAWLXXXXXXXXXXXV 4962
            P E L    S   A +      +   ++  G    AY  P+     WL            
Sbjct: 351  PPETLWGLPSLTRALYSYTIKGDTLTYIPEGHVGSAYVQPVSGN-RWLRTDALITPRNSC 409

Query: 4961 YHVVLLDYKLGHCVWHVFAGDAEEQHTRTFSTGSYVRIP--AAATGTWREEWLPTKLLTG 4788
             HV LL     H +  +       Q +R     +   +P      GT  +      L   
Sbjct: 410  VHVSLLSQDFAHQLIVISRAPLLPQKSRLMGLRNVSVVPWFIHPMGTLYQRLTSPGLNRA 469

Query: 4787 VLAFTTRTPDLSTRNLSAKVSQLATSIMPR 4698
            +  + TR    S R++ +K +    +I  R
Sbjct: 470  LQTYITRVGSTSIRDIYSKSTATEVAIFER 499


>gb|AFV61767.1| replicase [Garlic virus X]
          Length = 1544

 Score =  112 bits (280), Expect = 4e-21
 Identities = 175/725 (24%), Positives = 269/725 (37%), Gaps = 13/725 (1%)
 Frame = -2

Query: 2573 ALAEEELTYTADLGRAARLVSDLKAHPSVLESFQSPAVLQSLDNILDLHRL---EGSSRT 2403
            AL      YT D  RA   +SD+K + + L       VL  LD  L    +   E + R 
Sbjct: 688  ALKRNCYNYTLDAKRATAFMSDVKNNLTGL-------VLPKLDRDLLTSWVALSENACRK 740

Query: 2402 VRVRAYFGIWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNF 2223
            V +    G  G GK+ A +  L+    D   +  II  T +L    K  +  P++     
Sbjct: 741  VGLIVIHGAGGAGKSRALQEILRSNSIDTN-EVNIIVPTINLAVDWKKKM--PKIDPRRV 797

Query: 2222 PTLASAITEPCSGPVVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQ 2043
             T   A        V+ DD GK   G +D  +     +  V++ GD  Q +       +Q
Sbjct: 798  MTFEKACEREGKSVVIMDDYGKLPAGYIDAYLAIKFNVEIVILTGDQRQSVFHNDRKDSQ 857

Query: 2042 SEYDPSPIACLAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTA 1863
                 S  A        Y   THR    LA+   VH      G I H+            
Sbjct: 858  IALLTSNTAHFKRYCDYYLNATHRQPRRLANPIRVHAEREVGGAIKHSTLIPTHAMTLVP 917

Query: 1862 SPRYAGVLAAGGRQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAYVALTRSS-TGVWV 1686
            + R   +L   GRQA TYA  QG      + + +        D   Y AL+R+S T  +V
Sbjct: 918  AFRSQSLLTDLGRQAMTYAGCQGLTLPH-LTIVLDKDTPLCSDEVLYTALSRASETITFV 976

Query: 1685 HMDAMDPDSRTRSSPTGSVLMNALICAVRSGGSASLLQPSALVKSAFYRHLEWSMPSLPW 1506
            +  + + D   +   T    +  LI  VR    A                          
Sbjct: 977  NTYSSNKDFLDKLDSTP--YLKTLISGVREDEQA-------------------------- 1008

Query: 1505 FSRIGASVAASEYQSVFPAVEAHGLEESDPVDPVAGDHVITAGPPVEEICREVHFHAKEA 1326
                GA +   E     P V           D     H+  A   V+   +      K+ 
Sbjct: 1009 ----GAEIPPPE-----PEVR----------DAPTKTHIPVANNNVQLESKIETMEDKDT 1049

Query: 1325 RELPGPGGATD--QFKD-VAFVNPHVHKRADTTTYQLSVAKRLTPQSPAANAERMLRCPR 1155
            REL      T+  Q +D V  + PH   + D   +++++ +R+   +P  N + +     
Sbjct: 1050 RELWSGEEKTNLMQTQDPVIQLFPHQQAK-DEALFKITINERIKLANPETNCKALKETLN 1108

Query: 1154 TD--LCEEYDRL--VPRAPQWTAAKFEQYCER-AVNEYAAKRSHSAVIAKLRAHDPTRTA 990
            T   L E Y     VPR  Q    +   +C + A+  Y +K + +      R  DP    
Sbjct: 1109 TGNLLFEAYANFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTSNLQQGAQR-QDPDFPE 1167

Query: 989  ADIIISLKNQIIKKDEKRN-KVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNF 813
              I +  K+Q +KK EK   K +A  GQ I  +     L     AL+L  +  S  PDN 
Sbjct: 1168 NAIALFNKSQWVKKLEKVGCKFKA--GQTISAFKQSTVLLTTTMALYLRKKRESHQPDNI 1225

Query: 812  IFYRRMNPDQFIAAYQKRWRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVR 633
                   P+QF +    +W  +   +TSD T++D   D   LNF+    +  G P++ V 
Sbjct: 1226 FVMCEKTPEQFNSFVLTKWDFSRPNYTSDYTQYDQSQDSAFLNFELRKAKHFGLPDEIVD 1285

Query: 632  AYVERRLSSRSRHGNMATMQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAI 453
             Y   +  +++  GN+A M+ SG+  T+  N+       +L   +         GDD   
Sbjct: 1286 FYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVNACYAGDDLVR 1345

Query: 452  DRYCD 438
            D+ CD
Sbjct: 1346 DKACD 1350


>gb|AGE84283.1| replicase-associated protein, partial [Culex originated
            Tymoviridae-like virus]
          Length = 1761

 Score =  107 bits (267), Expect = 1e-19
 Identities = 115/422 (27%), Positives = 174/422 (41%), Gaps = 14/422 (3%)
 Frame = -2

Query: 2549 YTADLGRAARLVSDLKAH-PSVLESF--QSPAVLQSLDNILDLHRLEGSSRTVRVRAYFG 2379
            Y  DL RA +L S++K H   VL      SP +L + D+I+D       S +VR+    G
Sbjct: 845  YQIDLSRAKKLASNMKNHFDGVLRELLSASPNILHAFDSIVDF----APSHSVRLCHLAG 900

Query: 2378 IWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAIT 2199
              GCGK+   +++ +G   +  R+ R+      LR+  KA L FP  + +   T  +++ 
Sbjct: 901  FAGCGKSRPIQSFFRG--SEYSRELRVAVPNTDLRSHWKAQLRFPNSQSWRVSTWETSLL 958

Query: 2198 EPCSGPVVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPI 2019
            +     ++ D+  K   G LDL +L +P +  V++ GDP QG        +        I
Sbjct: 959  KHAR-ILIIDEIYKMPPGFLDLALLLDPCVATVIILGDPLQGSYHSMHPDSSLRTLTPEI 1017

Query: 2018 ACLAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGVL 1839
              L P +  Y   THR    +A  F V + +P  GH+ H+      + + TAS   +  L
Sbjct: 1018 YHLRPYIDLYCAWTHRSPRNVAQVFDVTSLSPENGHVYHSRIFPNNLHILTASESASKTL 1077

Query: 1838 AAGGRQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAY--------VALTRSSTGVWVH 1683
            + GG +A T AS QG      + +  +GL     DRS +        VALTR S  +   
Sbjct: 1078 SQGGCRAQTIASSQG------LTLQHSGLH---FDRSLFQVSPNITLVALTRHSRSITF- 1127

Query: 1682 MDAMDPDSRTRSSPTGSVLMNALICAVRSGGSASLLQ-PSALVKSAFYRHLEWSMPSLPW 1506
                D DS  R         N ++ A  SG    L   P         + L    P L  
Sbjct: 1128 --LGDSDSLRR-----KYAFNPVLSAFHSGSVLPLSSWPELSGVELLRQPLFIRSPKLSG 1180

Query: 1505 FSRIGASVAASEYQSVFPAVEAHGLEESDPVDPVAGDHVITAGPP--VEEICREVHFHAK 1332
               +  S  +       P    H +  S PV  +AG  +I   P   + E  R +HF   
Sbjct: 1181 GVSLPLSRKSIFNDKPLPTSAEHDVIRSAPVLTIAGPDLIPNLPTTHLPETRRPLHFEID 1240

Query: 1331 EA 1326
             A
Sbjct: 1241 SA 1242


>ref|YP_006843893.1| replicase-associated protein [Culex originated Tymoviridae-like
            virus] gi|407171243|gb|AFT60444.1| replicase-associated
            protein [Culex originated Tymoviridae-like virus]
          Length = 1769

 Score =  107 bits (267), Expect = 1e-19
 Identities = 115/422 (27%), Positives = 174/422 (41%), Gaps = 14/422 (3%)
 Frame = -2

Query: 2549 YTADLGRAARLVSDLKAH-PSVLESF--QSPAVLQSLDNILDLHRLEGSSRTVRVRAYFG 2379
            Y  DL RA +L S++K H   VL      SP +L + D+I+D       S +VR+    G
Sbjct: 845  YQIDLSRAKKLASNMKNHFDGVLRELLSASPNILHAFDSIVDF----APSHSVRLCHLAG 900

Query: 2378 IWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAIT 2199
              GCGK+   +++ +G   +  R+ R+      LR+  KA L FP  + +   T  +++ 
Sbjct: 901  FAGCGKSRPIQSFFRG--SEYSRELRVAVPNTDLRSHWKAQLRFPNSQSWRVSTWETSLL 958

Query: 2198 EPCSGPVVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPI 2019
            +     ++ D+  K   G LDL +L +P +  V++ GDP QG        +        I
Sbjct: 959  KHAR-ILIIDEIYKMPPGFLDLALLLDPCVATVIILGDPLQGSYHSMHPDSSLRTLTPEI 1017

Query: 2018 ACLAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGVL 1839
              L P +  Y   THR    +A  F V + +P  GH+ H+      + + TAS   +  L
Sbjct: 1018 YHLRPYIDLYCAWTHRSPRNVAQVFDVTSLSPENGHVYHSRIFPNNLHILTASESASKTL 1077

Query: 1838 AAGGRQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAY--------VALTRSSTGVWVH 1683
            + GG +A T AS QG      + +  +GL     DRS +        VALTR S  +   
Sbjct: 1078 SQGGCRAQTIASSQG------LTLQHSGLH---FDRSLFQVSPNITLVALTRHSRSITF- 1127

Query: 1682 MDAMDPDSRTRSSPTGSVLMNALICAVRSGGSASLLQ-PSALVKSAFYRHLEWSMPSLPW 1506
                D DS  R         N ++ A  SG    L   P         + L    P L  
Sbjct: 1128 --LGDSDSLRR-----KYAFNPVLSAFHSGSVLPLSSWPELSGVELLRQPLFIRSPKLSG 1180

Query: 1505 FSRIGASVAASEYQSVFPAVEAHGLEESDPVDPVAGDHVITAGPP--VEEICREVHFHAK 1332
               +  S  +       P    H +  S PV  +AG  +I   P   + E  R +HF   
Sbjct: 1181 GVSLPLSRKSIFNDKPLPTSAEHDVIRSAPVLTIAGPDLIPNLPTTHLPETRRPLHFEID 1240

Query: 1331 EA 1326
             A
Sbjct: 1241 SA 1242


>ref|NP_542612.1| replicase [Grapevine fleck virus] gi|81956065|sp|Q8UZB6.1|RDRP_GFKVM
            RecName: Full=RNA replication protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase; Includes: RecName: Full=Methyltransferase
            gi|18073602|emb|CAC84400.1| replicase [Grapevine fleck
            virus]
          Length = 1949

 Score =  105 bits (263), Expect = 4e-19
 Identities = 95/303 (31%), Positives = 135/303 (44%), Gaps = 9/303 (2%)
 Frame = -2

Query: 2549 YTADLGRAARLVSDLKAHPSVLESFQSPA--------VLQSLDNILDLHRLEGSSRTVRV 2394
            Y+  L RA  LVS+LK     L S   PA        ++Q+LD+  D          + +
Sbjct: 988  YSIALPRAKNLVSNLKNGFDGLVS-SLPASDRTNLLPLIQALDHTADFPPARPPVGLIHI 1046

Query: 2393 RAYFGIWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTL 2214
                G  GCGK+   +   Q L     R  R+++ T  LR + K  L       +   T 
Sbjct: 1047 A---GFAGCGKSYPIQ---QLLATQTFRHFRVVTPTTELRHEWKRALKLEGPSSWRVSTW 1100

Query: 2213 ASAITEPCSGPVVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEY 2034
             +A+ +  S  +V D+  K   G LDL +L +P +  V++ GDP QG    P     S +
Sbjct: 1101 ETALAKRAS-VLVIDEVYKLPRGYLDLALLADPTVEFVIILGDPLQGSYN-PTNPDSSNH 1158

Query: 2033 DPSPIAC-LAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASP 1857
               P    L P +  Y   T R   L+AD FGV TTNP+RGH+   +      P+   S 
Sbjct: 1159 RLIPEEDHLRPFIDFYCLWTRRLPRLVADFFGVPTTNPTRGHLAFASLNTTQSPLLVPSD 1218

Query: 1856 RYAGVLAAGGRQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMD 1677
              A  L AGG +A TYA+ QG  +   + + +      V +  A VALTRS +GV     
Sbjct: 1219 SMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNSNLVTNHVALVALTRSRSGVHFRPR 1278

Query: 1676 AMD 1668
            A D
Sbjct: 1279 AQD 1281


>ref|NP_047920.1| replicase protein [Erysimum latent virus]
            gi|548563|sp|P35928.1|POLR_ELV RecName: Full=RNA
            replicase polyprotein gi|3892232|gb|AAC80555.1| replicase
            protein [Erysimum latent virus]
          Length = 1748

 Score =  102 bits (254), Expect = 5e-18
 Identities = 205/891 (23%), Positives = 345/891 (38%), Gaps = 93/891 (10%)
 Frame = -2

Query: 2651 PSHWVSIQQSLETRLAGYR-DLFLPPVALAEEELTYTADLGRAARLVSDLK--------- 2502
            PS   + + SL   L G+R +  L P+   ++  ++T++  RA  L S++K         
Sbjct: 779  PSRSQTNENSLRRSLLGFRLNGNLLPI---DQVHSFTSEPSRAKNLASNMKNGFDGILTT 835

Query: 2501 -AHPSVLESFQSPAV-LQSLDNILDLHRLEGSSRTVRVRAYFGIWGCGKTTATKAYLQGL 2328
             A  S L S  SP   + +LD I D        +TV +    G  GCGKT   +  L+  
Sbjct: 836  LAALSSLSSGPSPRDRIFTLDGICDF----ALPKTVDLIHLSGFAGCGKTHPIQQLLK-- 889

Query: 2327 DPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAITEPCSGPVVFDDAGKFWG 2148
             P      R+++ T +LR++ K+ +  P    + F T  SA+ +     +V D+  K   
Sbjct: 890  TPHFHN-FRVVTPTTNLRSEWKSDMALPAHHNWRFSTWESALLKHAE-ILVIDEIYKLPR 947

Query: 2147 GMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPMVTRYATVTHRG 1968
            G LDL ++ +P +  V++ GDP QG      A + +    S I  L P +  Y   ++R 
Sbjct: 948  GYLDLSLIADPTVKLVILLGDPLQGEYHSTSAHSSNLRLSSEIPRLLPFIDYYCYWSYRV 1007

Query: 1967 FGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGVLAAGGRQAYTYASVQGED 1788
               +A  F +   NPS G I  T +          S     +  A G  A T +S QG  
Sbjct: 1008 PKCVAKLFSLPCFNPSEGFIKTTLDFFPSANNLVNSHSVVHISEACGWNAVTISSSQGCT 1067

Query: 1787 FKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMDPDSRTRSSPTGSVLMNAL-- 1614
            F +   + +      +   +  VALTRS +GV+   D     S + SS   S+  +    
Sbjct: 1068 FSDPAFIHLDRNTALLSPSNCLVALTRSRSGVYFKGDFTFLSSLSGSSRMFSLAYSGQPI 1127

Query: 1613 --------ICAVRSGGSASLLQPSALVKSAFYRHLEW-----SMPSLPWFSRIGASVAAS 1473
                    I    +  +A L + S+  +S F  ++       + P+LP    I  + +  
Sbjct: 1128 HLPDFFPEIVFQLNMITAPLTKRSSSFRSGFQPNISSAPKIPAPPNLPCPPHIPTNYSKD 1187

Query: 1472 ---EYQSVF--------------------------PAVEAHGLEESDPVDPVAGDHVITA 1380
                 Q+++                           A  +   + SD  +PV  DH    
Sbjct: 1188 VIVNNQALYGESLERRLSVLHLPPTRMTLHSDINITAPSSSSFQPSD--EPVPSDHT-AV 1244

Query: 1379 GPPVEEICREVHF---HAKEARELPGPGGATDQF-----------KDVAFVNPHVHKRAD 1242
             P  +      HF   H  E +E+      + QF           +  + ++      +D
Sbjct: 1245 YPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLDFHISCQTSSLISARHQPGSD 1304

Query: 1241 TTTYQLSVAKRL------TPQSPAANAERMLRCPRTDLCEEYDRLVPRAPQWTAAKFEQY 1080
            +T    S+ KRL       P     +   +  C     C+ Y R       +  A F + 
Sbjct: 1305 STLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLEC 1364

Query: 1079 CERAVNEYA--AKRSHSAVIAKLRAHDPTRTAADIIISLKNQIIKKDE------KRNKVE 924
               AVN+YA  + ++ + ++A     DP      + I  K+Q    D       K  +  
Sbjct: 1365 I--AVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQTL 1422

Query: 923  AIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRMNPDQFIAAYQKRWRVNN 744
            A    L+H+Y I+ TL        L D++      + I+Y   N    +  +  +    +
Sbjct: 1423 A----LMHDYVIL-TLGPVKKYQRLFDQLER---PSHIYYHAGNTPHDLRRWCSKHLETS 1474

Query: 743  GVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERRLSSRSRHGNMATMQNSG 564
               T+D T +D    G  + F+   MRR   PE+ +  +V  + +  ++ G +  M+ +G
Sbjct: 1475 HCTTNDYTAFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNVETQFGPLTCMRLTG 1534

Query: 563  DRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAIDRYCDSDFFPDSPWEF-KNLNGP 387
            +  T+  N+     V +L   +    T+ ++GDD     Y      P S W F K L   
Sbjct: 1535 EPGTYDDNTDYNLAVLNLQYDLRKTPTL-VSGDDS----YLSGTLSPRSNWPFVKELLHL 1589

Query: 386  R--------GEFSGFELGGPIPEYSARGIHYRTMILESRDPSAQNKWLNYL 258
            R        G F G+ LG      +   +  + MI E  D SA +K  +YL
Sbjct: 1590 RLKPSSLIDGLFCGYYLGPQGCIRNPLALFAKLMIAED-DGSAFDKLPSYL 1639


>gb|AHL25284.1| RNA-dependent RNA polymerase, partial [Rhizoctonia virus RS002]
          Length = 285

 Score = 97.8 bits (242), Expect = 1e-16
 Identities = 75/275 (27%), Positives = 113/275 (41%), Gaps = 7/275 (2%)
 Frame = -2

Query: 1118 RAPQWTAAKFEQYCERAVNEYAAKRSHSAVIAKLRAHDPTRTAADIIISLKNQIIKKDEK 939
            R+  +    +E   ER +  + + R+ + + A ++   P      + + LK+Q +KK  K
Sbjct: 13   RSQPFDEGLYEHCFERRLQSWVSSRTVAQLTASVKRAGPDWDPLFVKLFLKSQRVKKIGK 72

Query: 938  RNKVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRMNPDQFIAAYQKR 759
             +   A  GQ++ +        D  +AL+LE+ ++     N   + R N       Y K 
Sbjct: 73   AHAA-ATKGQIVTDVSQAKLFRDQVWALYLEEVLLRRTRKNIYLHTRANFSDMQRWYTKY 131

Query: 758  WRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERRLSSRSRHGNMAT 579
            W    G    D T WD G D       ++VMR  G P+  V  +   R + RS  G M  
Sbjct: 132  WVTGAGCTACDYTGWDSGVDESFTLLYSNVMRAFGIPDSVVDRFCSDRNNLRSFLGPMPA 191

Query: 578  MQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAIDRYCD-------SDFFPD 420
            MQ SGDRYTW  N++    V  +   V P      +GDD  +  Y D       S F P 
Sbjct: 192  MQASGDRYTWLANTIGNMAVTGVSFDVGPKTAACFSGDDMIMCGYYDYRSSAASSQFIP- 250

Query: 419  SPWEFKNLNGPRGEFSGFELGGPIPEYSARGIHYR 315
                 K +     EF GF  G      SA  + +R
Sbjct: 251  -----KVIQAQLTEFCGFMYGSTRLHVSATVLLHR 280


>ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9DRA1.1|RDRP_BOTVF
            RecName: Full=RNA replication protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase; Includes: RecName: Full=Methyltransferase
            gi|10801178|gb|AAG23416.1|AF238884_2 replicase [Botrytis
            virus F]
          Length = 1896

 Score = 95.1 bits (235), Expect = 7e-16
 Identities = 83/300 (27%), Positives = 139/300 (46%), Gaps = 8/300 (2%)
 Frame = -2

Query: 1325 RELPGPGGATDQFKDVAFVNPHVHKRADTTTYQLSVAKRLTPQSPAANAERMLRCPR--- 1155
            R++ G G   D F +        H+  D  T  ++ AKRL     AAN ER +   +   
Sbjct: 1481 RQVHGSGDDRDVFLE--------HRGDDKATANITYAKRLRFSQRAAN-ERSIAATKVAG 1531

Query: 1154 TDLCEEYDRLVPRAPQWTAAKFEQYCERAVNE--YAAKRSHSAVIAKLRAHDPTRTAADI 981
            ++L E + R +P   +       + C R  N+  +   +  + +I      DP+ +   I
Sbjct: 1532 SELFEAFTRAIPLPQETFNDSLLEEC-RTENDTVHLTSKPLATLINNAERSDPSWSLNMI 1590

Query: 980  IISLKNQIIKKDEKRNKVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDN-FIFY 804
             + +K Q +KK EK    +A  GQ I  +     LA  P+A +++  I +  P + +I  
Sbjct: 1591 KLFIKGQTVKKLEKMGS-DATAGQSIASFRAEVLLAWGPYARYIDRRIRALLPPHVYIHS 1649

Query: 803  RRMNPD--QFIAAYQKRWRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRA 630
            RR N D  +F+AA+   W         D T +D   D   +NF+  +MRR  FP D + A
Sbjct: 1650 RRTNEDFEKFVAAH---WDHTRESTDGDYTAYDASQDATFVNFETLLMRRLDFPLDIIEA 1706

Query: 629  YVERRLSSRSRHGNMATMQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDDEAID 450
            YVE + S  S  G +A M+ SG+ +T+  N++   +  +   +  P+      GDD++I+
Sbjct: 1707 YVEMKASITSHFGPLAIMRFSGEVWTYLFNTLGN-IAFTYAKYEVPSVAQVYGGDDKSIN 1765



 Score = 92.4 bits (228), Expect = 5e-15
 Identities = 81/290 (27%), Positives = 128/290 (44%), Gaps = 5/290 (1%)
 Frame = -2

Query: 2465 AVLQSLDNILDLHRLEGSSRTVRVRAYFGIWGCGKTTATKAYLQGLDPD---VRRQARII 2295
            A  + LD  +D   + G +R+V V  + G+ G GK+       + L  +   + +  RI+
Sbjct: 1031 AEAEQLDAYIDSWAVNGFNRSVHVIYFCGLPGTGKSRRCMKMTERLLKENKYLAQTVRIV 1090

Query: 2294 SHTESLRAQAKAGLDFPELRGFNFPTLASAITEPCSGPV-VFDDAGKFWGGMLDLIILTN 2118
            + T++LR      L  P    ++  T  + I +P  GPV + D+ GK   G L+ ++  N
Sbjct: 1091 TPTDNLRNSVARQLKPPTESSYSVQTYETPIRQPSLGPVLIVDEYGKMPAGWLETVLFLN 1150

Query: 2117 PMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPMVTRYATVTHRGFGLLADTFGV 1938
            P +  V+   DP QG+ +  +        PS    +A     Y  V+ R    +A   G+
Sbjct: 1151 PRVQMVIFTADPTQGIFRTRIPDAYCCRIPSSTEAIASYAHEYRRVSDRPAPGVARALGL 1210

Query: 1937 HTTNPSRGHI-THTNEPVAGVPVCTASPRYAGVLAAGGRQAYTYASVQGEDFKEDMEVDM 1761
             TT+   G I T T   V  + V     R A     GG+  YTYA+ QGE F    ++ +
Sbjct: 1211 PTTSRRPGQIETSTELNVDWITVRPEGERAAWHNTWGGK-VYTYATCQGETFHRAYQMVI 1269

Query: 1760 TGLEGSVMDRSAYVALTRSSTGVWVHMDAMDPDSRTRSSPTGSVLMNALI 1611
             G      DR  + ALTR S  + +  +        RS+   S L NAL+
Sbjct: 1270 NGNTRFWDDRDLFAALTRGSGTLRLIYETQSSKPLPRST---SKLYNALL 1316


>ref|YP_004464930.1| unnamed protein product [Bombyx mori Macula-like virus]
            gi|333033738|dbj|BAK23257.1| RNA-dependent RNA polymerase
            [Bombyx mori Macula-like virus]
          Length = 1759

 Score = 94.4 bits (233), Expect = 1e-15
 Identities = 88/293 (30%), Positives = 127/293 (43%), Gaps = 7/293 (2%)
 Frame = -2

Query: 2549 YTADLGRAARLVSDLKAHP-----SVLESFQS-PAVLQSLDNILDLHRLEGSSRTVRVRA 2388
            YT    RA  L S++K        S L +  S P     LD   D         +V++  
Sbjct: 803  YTLCKPRAKNLASNMKNETDGVIQSTLRAASSDPTFFHRLDQRADF----APQVSVQLIH 858

Query: 2387 YFGIWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLAS 2208
              G  GCGKT      L+      + Q R+   T  LR++ K  +  P    +   T  +
Sbjct: 859  ITGFPGCGKTFPVTQLLK--TKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWET 916

Query: 2207 AITEPCSGPV-VFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYD 2031
            ++ +  S PV V D+  K   G LDL ++ +P L  V++ GDP Q +       + +   
Sbjct: 917  SLMK--SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRL 974

Query: 2030 PSPIACLAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRY 1851
             S +  L P    Y   THR    LA  FGV TTNP  G I   + P    P+ T+S + 
Sbjct: 975  LSEVEHLKPYRDFYCHWTHRLPRRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQT 1034

Query: 1850 AGVLAAGGRQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGV 1692
            A V A  G +A T+ S QG  F+   ++ +     SV   +  VA TRS +GV
Sbjct: 1035 ARVCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGV 1087


>dbj|BAD35017.1| RNA-dependent RNA polymerase [Bombyx mori Macula-like virus]
          Length = 1747

 Score = 92.8 bits (229), Expect = 4e-15
 Identities = 77/255 (30%), Positives = 115/255 (45%), Gaps = 1/255 (0%)
 Frame = -2

Query: 2381 GIWGCGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAI 2202
            G  GCGKT      L+      + Q R+   T  LR++ K  +  P    +   T  +++
Sbjct: 860  GFPGCGKTFPVTQLLK--TKAFKGQYRVAVPTTELRSEWKDHMKLPSSDAWRVSTWETSL 917

Query: 2201 TEPCSGPV-VFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPS 2025
             +  S PV V D+  K   G LDL ++ +P L  V++ GDP Q +       + +    S
Sbjct: 918  MK--SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLIS 975

Query: 2024 PIACLAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAG 1845
             +  L P    Y   THR    LA  FGV TTNP  G I   + P    P+ T+S + A 
Sbjct: 976  EVEHLKPYRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPILTSSQQTAR 1035

Query: 1844 VLAAGGRQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMDP 1665
            V A  G +A T+ S QG  F+   ++ +     SV   +  VA TRS +GV    +    
Sbjct: 1036 VCAGTGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTGNHRLF 1095

Query: 1664 DSRTRSSPTGSVLMN 1620
             SR  ++P    ++N
Sbjct: 1096 QSRPGTAPLFEAMLN 1110


>gb|AHX22590.1| RNA-dependent RNA polymerase [Bombyx mori Macula-like virus]
          Length = 1748

 Score = 91.3 bits (225), Expect = 1e-14
 Identities = 88/311 (28%), Positives = 132/311 (42%), Gaps = 7/311 (2%)
 Frame = -2

Query: 2531 RAARLVSDLK------AHPSVLESFQSPAVLQSLDNILDLHRLEGSSRTVRVRAYFGIWG 2370
            RA  L S++K         S+  +   P     LD   D         +V++    G  G
Sbjct: 809  RAKNLASNMKNETDGVIQSSLRAASSDPTFFHRLDQRADF----APRVSVQLIHITGFPG 864

Query: 2369 CGKTTATKAYLQGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAITEPC 2190
            CGKT      L+      + Q R+   T  LR++ K  +  P    +   T  +++ +  
Sbjct: 865  CGKTFPVTQLLK--TKAFKGQYRVAVPTTELRSEWKDHMKLPSSDVWRVSTWETSLMK-- 920

Query: 2189 SGPV-VFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIAC 2013
            S PV V D+  K   G LDL ++ +P L  V++ GDP Q +       + +    S +  
Sbjct: 921  SAPVLVIDEVYKMPRGFLDLALVADPALQFVILLGDPCQTVYSSVNPDSSNYRLISEVEH 980

Query: 2012 LAPMVTRYATVTHRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGVLAA 1833
            L P    Y   THR    LA  FGV TTNP  G I   + P    P  T+S + A V A 
Sbjct: 981  LKPYRDFYCHWTHRLPLRLARFFGVSTTNPQEGFIGRRDNPHKSYPTLTSSQQTARVCAG 1040

Query: 1832 GGRQAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMDPDSRT 1653
             G +A T+ S QG  F+   ++ +     SV   +  VA TRS +GV    +     SR 
Sbjct: 1041 TGHRALTFCSSQGSTFQAPAQIFVDSNVASVHVSATLVATTRSRSGVIFTGNHRLFQSRP 1100

Query: 1652 RSSPTGSVLMN 1620
             ++P    ++N
Sbjct: 1101 GTAPLFEAMLN 1111


>ref|NP_112029.1| RNA-dependant RNA polymerase [Banana mild mosaic virus]
            gi|13507175|gb|AAK28489.1|AF314662_1 RNA-dependant RNA
            polymerase [Banana mild mosaic virus]
          Length = 1771

 Score = 91.3 bits (225), Expect = 1e-14
 Identities = 71/284 (25%), Positives = 134/284 (47%), Gaps = 5/284 (1%)
 Frame = -2

Query: 1298 TDQFKDVAFVNPHVHKRADTTTYQLSVAKRLTPQSPAANAERMLRCPRT--DLCEEYDRL 1125
            T+Q +    + P  H+ +DT T+ ++V KRL+   P    +R L   R   ++ + +++ 
Sbjct: 1361 TNQAQKFESIYPR-HRNSDTVTFLMAVKKRLSFSQPRKEMQRYLMNKRKGEEMADAFEKF 1419

Query: 1124 VPRAPQWTAAKFEQYCERAVNEYAAKR---SHSAVIAKLRAHDPTRTAADIIISLKNQII 954
            VP    ++  KF +    A  E+ +K+   S + +    +  +      + +I +K+Q+ 
Sbjct: 1420 VPIKSNFSREKFIE----AKMEFESKKLEKSKATIENHAQRSNREWKIDEAMIFMKSQLC 1475

Query: 953  KKDEKRNKVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFPDNFIFYRRMNPDQFIA 774
             K EKR  VEA  GQ +  +  +     AP+  ++E  +    P NF  +   N D  + 
Sbjct: 1476 TKFEKRF-VEAKAGQTLACFSHIVLCRFAPYVRYMEKIVNENLPKNFYIHNGKNFDD-LN 1533

Query: 773  AYQKRWRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPEDYVRAYVERRLSSRSRH 594
             Y K+   +     SD   +D   D  +L F+  +MRR   P++++  YV  + + RS+ 
Sbjct: 1534 DYVKKNNFSGRCIESDYEAFDASQDSQILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKL 1593

Query: 593  GNMATMQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDD 462
            GNMA M+ +G+  T+  N++   V   +   +   + +   GDD
Sbjct: 1594 GNMAIMRFTGEAATFLFNTMANIVFTIMAYDLKGDECILFAGDD 1637


>gb|AFV73358.1| 195 kDa replicase [Grapevine virus A]
          Length = 1710

 Score = 90.5 bits (223), Expect = 2e-14
 Identities = 140/600 (23%), Positives = 231/600 (38%), Gaps = 27/600 (4%)
 Frame = -2

Query: 2180 VVFDDAGKFWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPM 2001
            +V D+ G    G +DL+I      T V++ GDP Q            E     +      
Sbjct: 991  IVIDEIGLLPPGYIDLVISVFRPSTLVLL-GDPLQSSYHSKRDNVVLEASQEDVFSRIKG 1049

Query: 2000 VTRYATVTHRGFGLLADTFGVHTT-NPSRGHITHTNEPVAGVPVCTASPRYAGVLAAGGR 1824
               Y   +HR        F +    N +   +T  ++     PV  A+     +  A G 
Sbjct: 1050 ALPYLCYSHR-LPKNCKIFEIECMGNETEKRVTFRSKRGKDEPVICAT---RAMKEANGS 1105

Query: 1823 QAYTYASVQGEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGVWVHMDAMDPDSRTRSS 1644
              YT +  QG  FK  M + +        D    VA TRS   + + +D    +   R+S
Sbjct: 1106 GWYTVSETQGLSFKTCM-IKLCEHWAKKEDEDVMVAFTRSRGEIAIDVDRKLKEMLLRTS 1164

Query: 1643 PTGSVLMNALICAVRSGGSASLLQPSALVKSAFYRHLEWSM---------PSLPWFSRIG 1491
             +       L+  + SG +       ALVK    +H+  ++          ++ +  R+ 
Sbjct: 1165 KS------ELLKKILSGETYRRSSIIALVK----KHIPEAVIIFEENRLASNVDYEERLA 1214

Query: 1490 ASVAASEYQSVFPAVEAHGLEESDPVDPVAGDHVITAGPPVEEICREVHFH--AKEAREL 1317
                     S++  +E    EE    +PVA + + T  P  E++   V F   AKE RE 
Sbjct: 1215 GDPYLKSLLSLYEDIEE---EEVTLEEPVALEPIRTHLPLSEKLNELVPFDLKAKEDREQ 1271

Query: 1316 PGPGGATDQFKDVAFV----NPHVHKRA-------DTTTYQLSVAKRLTPQSPAANAERM 1170
                G T+Q  +  +     NP  HK         DT T+ +SV KRL  +S   N  + 
Sbjct: 1272 YTDAGRTEQIDEEGYAQWSANPMSHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKY 1331

Query: 1169 LRCPRTDLCEEYDRLVPRAPQWTAAKFEQYCERAVNEYAAKRSHSAVIAKLRAH----DP 1002
            L C    +  +   ++    QW   +     E+   E+  KR   +  A +  H    DP
Sbjct: 1332 LACH--GIGRQMFSVLKETYQWRDIESLPELEKCEKEFMRKRVEKSA-ALIEQHSGRSDP 1388

Query: 1001 TRTAADIIISLKNQIIKKDEKRNKVEAIPGQLIHEYDIMHTLADAPFALFLEDEIISAFP 822
               +  + I LK Q   K EKR  V+A  GQ I  +         P     E       P
Sbjct: 1389 DWPSNYLKIFLKQQTCTKMEKRG-VDAKAGQTIACFAHSVLCRFGPLLRQTEKAFRELLP 1447

Query: 821  DNFIFYRRMNPDQFIAAYQKRWRVNNGVHTSDVTRWDVGCDGGVLNFDAHVMRRSGFPED 642
            +N + Y + N    +  + K W        SD   +D   D  +L+ +  V++   +PE+
Sbjct: 1448 ENVMIYSQKNYMD-LDKWAKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVLKFFLWPEE 1506

Query: 641  YVRAYVERRLSSRSRHGNMATMQNSGDRYTWPLNSVRRAVVASLINHVTPADTVAINGDD 462
             ++ Y   +L   S  G++A M+ SG+  T+  N++   V + +  H++    +   GDD
Sbjct: 1507 MIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLSKNTPICFAGDD 1566


>ref|YP_002308439.1| polyprotein [Scrophularia mottle virus] gi|59709785|gb|AAW88520.1|
            polyprotein [Scrophularia mottle virus]
          Length = 1800

 Score = 89.7 bits (221), Expect = 3e-14
 Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 7/334 (2%)
 Frame = -2

Query: 2672 ATAVRPNPSHWVSIQQSLETRLAGYRDLFLPPVALAEEELTYTADLGRAARLVSDLKAHP 2493
            A+A   N S    ++ +L  +  G    FLP +    +  ++   +  A  L+S++K   
Sbjct: 819  ASAPGSNQSKSALVRSALRFQFNG---AFLPFL----QAHSHLISVPHAKNLISNMKNGF 871

Query: 2492 SVLES--FQSPAV-----LQSLDNILDLHRLEGSSRTVRVRAYFGIWGCGKTTATKAYLQ 2334
              + S    SP V     L  LD+++D+       R V +    G  GCGK+   +  L+
Sbjct: 872  DGITSQLSNSPGVSPKSKLLELDSLIDV----AQPRNVDIIHIAGFAGCGKSHPVQHLLK 927

Query: 2333 GLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAITEPCSGPVVFDDAGKF 2154
                   R  R+   T  LR++ K  LD PE   +   T  +++ +  S  +V D+  K 
Sbjct: 928  ---TKPFRHFRLSVPTNELRSEWKRDLDLPESEAWRLCTWETSLFKS-SSVIVIDEIYKL 983

Query: 2153 WGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPMVTRYATVTH 1974
              G LDLI+L++P +   ++ GDP QG        + +   PS    LAP +  Y   T+
Sbjct: 984  PRGYLDLILLSDPSIQLAILLGDPLQGEYHSTHPSSSNARLPSETIRLAPYIDCYCWWTY 1043

Query: 1973 RGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGVLAAGGRQAYTYASVQG 1794
            R    +AD FGV T +   G I        G+P    S   A  +   G  A T +S QG
Sbjct: 1044 RCPKKIADLFGVKTFSDKEGFIRSALSHPQGLPNLVNSIATANTMQNLGHHALTISSSQG 1103

Query: 1793 EDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGV 1692
              +   + + +      +  ++  VALTRS +GV
Sbjct: 1104 MTYSSPVTILLDRHSSLLSPQNGLVALTRSKSGV 1137


>ref|NP_067737.1| replication protein [Chayote mosaic virus]
            gi|6456718|gb|AAF09240.1|AF195000_2 replication protein
            [Chayote mosaic virus]
          Length = 1835

 Score = 89.0 bits (219), Expect = 5e-14
 Identities = 91/335 (27%), Positives = 145/335 (43%), Gaps = 9/335 (2%)
 Frame = -2

Query: 2669 TAVRPNPSHWVSIQQSLETRLAGYRDLFLPPVALAEEELTYTADLGRAARLVSDLK-AHP 2493
            +A R NP +   ++ +L  +   Y++ FLP     E    +T  L  A  L+S++K    
Sbjct: 864  SAPRSNPLNSPLVRAALRFK---YQNHFLP----FERAHAFTTSLPHAKNLISNMKNGFD 916

Query: 2492 SVLESFQSPAV--------LQSLDNILDLHRLEGSSRTVRVRAYFGIWGCGKTTATKAYL 2337
             +L S  SP+         L ++D ++D       +RTV +    G  GCGKT   +  L
Sbjct: 917  GILSSLDSPSSSGPSPREKLFAIDALID----STQARTVPIIHIAGFAGCGKTHPIQQLL 972

Query: 2336 QGLDPDVRRQARIISHTESLRAQAKAGLDFPELRGFNFPTLASAITEPCSGPVVFDDAGK 2157
            +     + R  R+   T  LR++ K  +       + F T  S++ +  S  +V D+  K
Sbjct: 973  R---TPLFRDFRVSCPTTDLRSEWKDDMKPSPPNVWRFSTWESSLLKT-SSVLVIDEVYK 1028

Query: 2156 FWGGMLDLIILTNPMLTEVVVNGDPAQGMAKFPVAGTQSEYDPSPIACLAPMVTRYATVT 1977
               G LDL IL++P +  V++ GDP QG        + +    S I  L+P +  Y   +
Sbjct: 1029 LPSGYLDLSILSDPAIQLVILLGDPLQGEYHSTSLSSSNSRLESEITRLSPFIDCYCWWS 1088

Query: 1976 HRGFGLLADTFGVHTTNPSRGHITHTNEPVAGVPVCTASPRYAGVLAAGGRQAYTYASVQ 1797
            +R    +A+   V + NP+RG I  +            S   A  L   G  A T +S Q
Sbjct: 1089 YRIPQSVAEVLDVTSFNPTRGFIRASLTHPQNSKNLVNSIATANALQHMGHHAMTISSSQ 1148

Query: 1796 GEDFKEDMEVDMTGLEGSVMDRSAYVALTRSSTGV 1692
            G  F E   + +      +   +  V LTRS TGV
Sbjct: 1149 GVTFSEANTILLDRNTNQLSPNTCLVGLTRSRTGV 1183