BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00001604
         (2772 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010663603.1| PREDICTED: chloroplastic group IIA intron sp...   994   0.0  
ref|XP_010663604.1| PREDICTED: chloroplastic group IIA intron sp...   991   0.0  
emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]   990   0.0  
ref|XP_007036533.1| CRS1 / YhbY domain-containing protein [Theob...   959   0.0  
ref|XP_009614576.1| PREDICTED: chloroplastic group IIA intron sp...   948   0.0  
ref|XP_011072348.1| PREDICTED: chloroplastic group IIA intron sp...   945   0.0  
ref|XP_010265125.1| PREDICTED: chloroplastic group IIA intron sp...   943   0.0  
ref|XP_007211308.1| hypothetical protein PRUPE_ppa001468mg [Prun...   939   0.0  
ref|XP_008240263.1| PREDICTED: chloroplastic group IIA intron sp...   937   0.0  
ref|XP_012093011.1| PREDICTED: chloroplastic group IIA intron sp...   937   0.0  
ref|XP_012440291.1| PREDICTED: chloroplastic group IIA intron sp...   936   0.0  
ref|XP_012440292.1| PREDICTED: chloroplastic group IIA intron sp...   936   0.0  
ref|XP_009767017.1| PREDICTED: chloroplastic group IIA intron sp...   936   0.0  
ref|XP_012440290.1| PREDICTED: chloroplastic group IIA intron sp...   932   0.0  
ref|XP_008374754.1| PREDICTED: chloroplastic group IIA intron sp...   931   0.0  
ref|XP_011045860.1| PREDICTED: chloroplastic group IIA intron sp...   927   0.0  
ref|XP_011045859.1| PREDICTED: chloroplastic group IIA intron sp...   927   0.0  
ref|XP_009347186.1| PREDICTED: chloroplastic group IIA intron sp...   927   0.0  
gb|KHG01961.1| Chloroplastic group IIA intron splicing facilitat...   924   0.0  
ref|XP_010094746.1| Chloroplastic group IIA intron splicing faci...   919   0.0  

>ref|XP_010663603.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Vitis vinifera]
          Length = 833

 Score =  994 bits (2570), Expect = 0.0
 Identities = 523/703 (74%), Positives = 581/703 (82%), Gaps = 11/703 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            D  G D  ESRYFDG+SGTSAIERIV RLRNLGLG                 PVTG+EKL
Sbjct: 97   DSKGRDGTESRYFDGRSGTSAIERIVLRLRNLGLGSDDEDKNEGEVESGDTMPVTGDEKL 156

Query: 2595 GDLLKRDWVRPDVMLIEDKD-DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTI 2419
            GDLL+RDWVRPD MLIED+D D+ +LPW            DGR+ K+R VRAPTLAELTI
Sbjct: 157  GDLLQRDWVRPDSMLIEDEDEDDMILPWERGEERQEEEG-DGRL-KRRAVRAPTLAELTI 214

Query: 2418 EDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAH 2239
            EDEELRRLR+LGMT+RERI+V KAG+T AVL KIHEKWRK ELVRLKFHE LAHDMKTAH
Sbjct: 215  EDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAH 274

Query: 2238 EIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNG 2059
            EIVERRTGGLV WR+GSVMVVFRG+NYEGP  KPQ VD EGD+LFVPDVSS +NP +RN 
Sbjct: 275  EIVERRTGGLVTWRSGSVMVVFRGTNYEGPP-KPQPVDGEGDSLFVPDVSSVDNPAMRND 333

Query: 2058 NDATSTLEKRESTLLGRV--QNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQT 1885
            N+   TLEK    +   V  +NMTE+EAE+N LLDGLGPRF DWWGTG+LPVD DLLPQ+
Sbjct: 334  NNGGPTLEKGSLPVRNPVHAENMTEEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQS 393

Query: 1884 IPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS 1705
            IPGYKTP R+LPTGMRPRLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS
Sbjct: 394  IPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS 453

Query: 1704 LVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQ 1525
            +V KIAVK GIQNTNNKLMAEEIK LTGGVLLLRNKYYIVIYRGKDFLPTSVAAAL+ER+
Sbjct: 454  IVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSERE 513

Query: 1524 EMTKQIQDVEEKMRRGAAEVAPKGED--GQALAGTLAEFYEAQARWGREISAEEHEKMLE 1351
            E+TK IQ VEEK+R G AE  P GED  GQ LAGTLAEFYEAQARWGREISAEEHEKM+E
Sbjct: 514  ELTKHIQVVEEKVRTGGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIE 573

Query: 1350 EASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFR 1171
            EASRAK+ARV K+IEHKLA+             KIEASM+P  P DDQETITDEERFMFR
Sbjct: 574  EASRAKSARVVKRIEHKLALAQAKKLRAERLLAKIEASMIPAGPSDDQETITDEERFMFR 633

Query: 1170 RVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGG 997
            R+GLRMKAYL LG+RGVFDGVIENMHLHWKHRELVKLISKQK  A+VE+TARLLEYESGG
Sbjct: 634  RLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGG 693

Query: 996  ILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELE 817
            ILVAIERVPKG+A+IYYRGKNYRRP+SLRPRNLLTKAKALKR+VA+QRHEALSQHISELE
Sbjct: 694  ILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELE 753

Query: 816  KTIGQMXXXXXXXXXXXXENARNLD-NSQHNHVTEFTQNKDEA 691
            +TI QM            +++ + + + Q + V+E ++++DEA
Sbjct: 754  RTIEQMKMEIGDSKDAEDKDSWSTEGHGQFDQVSEVSKSEDEA 796


>ref|XP_010663604.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Vitis vinifera]
            gi|297734212|emb|CBI15459.3| unnamed protein product
            [Vitis vinifera]
          Length = 830

 Score =  991 bits (2562), Expect = 0.0
 Identities = 521/702 (74%), Positives = 577/702 (82%), Gaps = 10/702 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            D  G D  ESRYFDG+SGTSAIERIV RLRNLGLG                 PVTG+EKL
Sbjct: 97   DSKGRDGTESRYFDGRSGTSAIERIVLRLRNLGLGSDDEDKNEGEVESGDTMPVTGDEKL 156

Query: 2595 GDLLKRDWVRPDVMLIEDKD-DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTI 2419
            GDLL+RDWVRPD MLIED+D D+ +LPW            DGR+ K+R VRAPTLAELTI
Sbjct: 157  GDLLQRDWVRPDSMLIEDEDEDDMILPWERGEERQEEEG-DGRL-KRRAVRAPTLAELTI 214

Query: 2418 EDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAH 2239
            EDEELRRLR+LGMT+RERI+V KAG+T AVL KIHEKWRK ELVRLKFHE LAHDMKTAH
Sbjct: 215  EDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAH 274

Query: 2238 EIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNG 2059
            EIVERRTGGLV WR+GSVMVVFRG+NYEGP  KPQ VD EGD+LFVPDVSS +NP +RN 
Sbjct: 275  EIVERRTGGLVTWRSGSVMVVFRGTNYEGPP-KPQPVDGEGDSLFVPDVSSVDNPAMRND 333

Query: 2058 NDATSTLEKRESTLLGRV--QNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQT 1885
            N+   TLEK    +   V  +NMTE+EAE+N LLDGLGPRF DWWGTG+LPVD DLLPQ+
Sbjct: 334  NNGGPTLEKGSLPVRNPVHAENMTEEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQS 393

Query: 1884 IPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS 1705
            IPGYKTP R+LPTGMRPRLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS
Sbjct: 394  IPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS 453

Query: 1704 LVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQ 1525
            +V KIAVK GIQNTNNKLMAEEIK LTGGVLLLRNKYYIVIYRGKDFLPTSVAAAL+ER+
Sbjct: 454  IVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSERE 513

Query: 1524 EMTKQIQDVEEKMRRGAAEVAPKGED--GQALAGTLAEFYEAQARWGREISAEEHEKMLE 1351
            E+TK IQ VEEK+R G AE  P GED  GQ LAGTLAEFYEAQARWGREISAEEHEKM+E
Sbjct: 514  ELTKHIQVVEEKVRTGGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIE 573

Query: 1350 EASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFR 1171
            EASRAK+ARV K+IEHKLA+             KIEASM+P  P DDQETITDEERFMFR
Sbjct: 574  EASRAKSARVVKRIEHKLALAQAKKLRAERLLAKIEASMIPAGPSDDQETITDEERFMFR 633

Query: 1170 RVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGG 997
            R+GLRMKAYL LG+RGVFDGVIENMHLHWKHRELVKLISKQK  A+VE+TARLLEYESGG
Sbjct: 634  RLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGG 693

Query: 996  ILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELE 817
            ILVAIERVPKG+A+IYYRGKNYRRP+SLRPRNLLTKAKALKR+VA+QRHEALSQHISELE
Sbjct: 694  ILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELE 753

Query: 816  KTIGQMXXXXXXXXXXXXENARNLDNSQHNHVTEFTQNKDEA 691
            +TI QM            +++ + +   H    + ++++DEA
Sbjct: 754  RTIEQMKMEIGDSKDAEDKDSWSTEG--HGQFDQVSESEDEA 793


>emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
          Length = 850

 Score =  990 bits (2560), Expect = 0.0
 Identities = 517/666 (77%), Positives = 563/666 (84%), Gaps = 10/666 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            D  G D  ESRYFDG+SGTSAIERIV RLRNLGLG                 PVTG+EKL
Sbjct: 97   DSKGRDGTESRYFDGRSGTSAIERIVLRLRNLGLGSDDEDKNEGEVESGDTMPVTGDEKL 156

Query: 2595 GDLLKRDWVRPDVMLIEDKD-DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTI 2419
            GDLL+RDWVRPD MLIED+D D+ +LPW            DGR+ K+R VRAPTLAELTI
Sbjct: 157  GDLLQRDWVRPDSMLIEDEDEDDMILPWERGEERQEEEG-DGRL-KRRAVRAPTLAELTI 214

Query: 2418 EDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAH 2239
            EDEELRRLR+LGMT+RERI+V KAG+T AVL KIHEKWRK ELVRLKFHE LAHDMKTAH
Sbjct: 215  EDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAH 274

Query: 2238 EIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNG 2059
            EIVERRTGGLV WR+GSVMVVFRG+NYEGP  KPQ VD EGD+LFVPDVSS +NP +RN 
Sbjct: 275  EIVERRTGGLVTWRSGSVMVVFRGTNYEGPP-KPQPVDGEGDSLFVPDVSSVDNPAMRND 333

Query: 2058 NDATSTLEKRESTLLGRV--QNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQT 1885
            N+   TLEK    +   V  +NMTE+EAE+N LLDGLGPRF DWWGTG+LPVD DLLPQ+
Sbjct: 334  NNGGPTLEKGSLPVRNPVHAENMTEEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQS 393

Query: 1884 IPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS 1705
            IPGYKTP R+LPTGMRPRLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS
Sbjct: 394  IPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKS 453

Query: 1704 LVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQ 1525
            +V KIAVK GIQNTNNKLMAEEIK LTGGVLLLRNKYYIVIYRGKDFLPTSVAAAL+ER+
Sbjct: 454  IVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSERE 513

Query: 1524 EMTKQIQDVEEKMRRGAAEVAPKGED--GQALAGTLAEFYEAQARWGREISAEEHEKMLE 1351
            E+TK IQ VEEK+R G AE  P GED  GQ LAGTLAEFYEAQARWGREISAEEHEKM+E
Sbjct: 514  ELTKHIQVVEEKVRTGGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIE 573

Query: 1350 EASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFR 1171
            EASRAK+ARV K+IEHKLA+             KIEASM+P  P DDQETITDEERFMFR
Sbjct: 574  EASRAKSARVVKRIEHKLALAQAKKLRPERLLAKIEASMIPAGPSDDQETITDEERFMFR 633

Query: 1170 RVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGG 997
            R+GLRMKAYL LG+RGVFDGVIENMHLHWKHRELVKLISKQK  A+VE+TARLLEYESGG
Sbjct: 634  RLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGG 693

Query: 996  ILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELE 817
            ILVAIERVPKG+A+IYYRGKNYRRP+SLRPRNLLTKAKALKR+VA+QRHEALSQHISELE
Sbjct: 694  ILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELE 753

Query: 816  KTIGQM 799
            +TI QM
Sbjct: 754  RTIEQM 759


>ref|XP_007036533.1| CRS1 / YhbY domain-containing protein [Theobroma cacao]
            gi|508773778|gb|EOY21034.1| CRS1 / YhbY domain-containing
            protein [Theobroma cacao]
          Length = 919

 Score =  959 bits (2480), Expect = 0.0
 Identities = 509/704 (72%), Positives = 576/704 (81%), Gaps = 11/704 (1%)
 Frame = -1

Query: 2760 DGDDR--VESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            DGDD+  VE+RYFD     SAIERIV RLRNLGLG                 PVTGEE+L
Sbjct: 164  DGDDKTDVETRYFDRDKSQSAIERIVLRLRNLGLGSDDEDEGEDETDQYNSTPVTGEERL 223

Query: 2595 GDLLKRDWVRPDVMLIEDKDDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIE 2416
            GDLLKR+WVRPD MLIE + +E VLPW           E    VKKR VRAPTLAELTIE
Sbjct: 224  GDLLKREWVRPDTMLIEREKEEAVLPWERDEAEVEVVKEGVLGVKKRRVRAPTLAELTIE 283

Query: 2415 DEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHE 2236
            DEELRRLR++GM LRERI+V KAG+T AVLEKIH+KWRK ELVRLKFHE LA DMKTAHE
Sbjct: 284  DEELRRLRRMGMYLRERINVPKAGITQAVLEKIHDKWRKEELVRLKFHEVLATDMKTAHE 343

Query: 2235 IVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGN 2056
            IVERRTGGLV+WR+GSVMVV+RGSNYEGPS + Q++DREG+ LF+PDVSSA+N +  +  
Sbjct: 344  IVERRTGGLVLWRSGSVMVVYRGSNYEGPS-RSQSIDREGEALFIPDVSSASNAVRGSET 402

Query: 2055 DATSTLEKRESTLLG--RVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTI 1882
              TST EK E  ++   R ++MTE+EAE+N LLDG+GPRF +WWGTG+LPVDADLLPQ I
Sbjct: 403  GKTSTPEKCEPVVVKPERSESMTEEEAEYNSLLDGVGPRFVEWWGTGVLPVDADLLPQKI 462

Query: 1881 PGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSL 1702
            PGYKTPFRLLP GMRPRLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSL
Sbjct: 463  PGYKTPFRLLPAGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSL 522

Query: 1701 VAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQE 1522
            V KIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKY+IVIYRGKDFLPTSVAAALAERQE
Sbjct: 523  VVKIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTSVAAALAERQE 582

Query: 1521 MTKQIQDVEEKMRRGAAEVAPKGED-GQALAGTLAEFYEAQARWGREISAEEHEKMLEEA 1345
            +TKQIQDVEEK+R  A E A  GED G+A AGTLAEFYEAQA WGREISAEE EKM+EEA
Sbjct: 583  LTKQIQDVEEKVRIRAVEPAQSGEDKGEAPAGTLAEFYEAQACWGREISAEEREKMIEEA 642

Query: 1344 SRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRV 1165
            S+AK+AR+ K++EHKLA+             KIE+SM+P  P  DQETITDEER MFRRV
Sbjct: 643  SKAKHARLVKRVEHKLAVAQAKKLRAERLLAKIESSMIPAAPDYDQETITDEERVMFRRV 702

Query: 1164 GLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGIL 991
            GLRMK YLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK  A+VE+TARLLE+ESGGIL
Sbjct: 703  GLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFESGGIL 762

Query: 990  VAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKT 811
            VAIERVPKG+A+IYYRGKNY RPISLRPRNLLTKAKALKR+VA+QRHEALSQHISELE+T
Sbjct: 763  VAIERVPKGYALIYYRGKNYHRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISELERT 822

Query: 810  IGQMXXXXXXXXXXXXENAR-NLDNSQHNHVTEFTQNKDEALWI 682
            I +M            E+++ + ++ Q + V+E TQ++DEA ++
Sbjct: 823  IEEMKKEIGASQDVEDEDSQVSGEHGQFDPVSELTQSEDEASYM 866


>ref|XP_009614576.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana tomentosiformis]
          Length = 834

 Score =  948 bits (2451), Expect = 0.0
 Identities = 501/704 (71%), Positives = 564/704 (80%), Gaps = 17/704 (2%)
 Frame = -1

Query: 2754 DDRVESRYFD---GKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS-------PVTGE 2605
            D   E++YFD    + GT+AIERIV RLRNLGLG             +       P  GE
Sbjct: 100  DSNTETKYFDENNSRVGTTAIERIVLRLRNLGLGSDDEDENEEEENSNLNSSSAVPSIGE 159

Query: 2604 E-KLGDLLKRDWVRPDVMLIEDKDDE---TVLPWXXXXXXXXXXXEDGRVVKKRTVRAPT 2437
            E KLGDLLKRDWVRPD++L E  DDE   T+LPW           E+ R  K+RTV+APT
Sbjct: 160  EEKLGDLLKRDWVRPDMILAESDDDEGDDTLLPWERSVEDGEVVVEEQRGGKRRTVKAPT 219

Query: 2436 LAELTIEDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAH 2257
            LAELTIEDEELRRLR+ GMTLRER+SV KAG+TGAVLEKIH+ WRK ELVRLKFHE LAH
Sbjct: 220  LAELTIEDEELRRLRRNGMTLRERVSVPKAGITGAVLEKIHDAWRKNELVRLKFHEVLAH 279

Query: 2256 DMKTAHEIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANN 2077
            DM+T HEIVERRTGGLVIWRAGSVMVV+RGSNYEGPSS+ ++VD +G+TLFVPDVSS + 
Sbjct: 280  DMRTGHEIVERRTGGLVIWRAGSVMVVYRGSNYEGPSSRSRSVDEDGNTLFVPDVSS-DK 338

Query: 2076 PILRNGNDATSTLEKRESTLLGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADL 1897
             I ++G  +   +E R      RVQNMTE+EAEFN LLDGLGPR+EDWWGTG+LPVDADL
Sbjct: 339  SIAKDGKSSNPVIENRNQVHPHRVQNMTEEEAEFNRLLDGLGPRYEDWWGTGVLPVDADL 398

Query: 1896 LPQTIPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKL 1717
            LPQTIPGYKTPFRLLPTGMR RLTNAE+TNLRK+AKSLPCHFALGRNRNHQGLAAAIIKL
Sbjct: 399  LPQTIPGYKTPFRLLPTGMRSRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKL 458

Query: 1716 WEKSLVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAAL 1537
            WEKSLV KIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKYYI+ YRGKDFLP +VAAAL
Sbjct: 459  WEKSLVVKIAVKRGIQNTNNKLMAEELKKLTGGVLLLRNKYYIIFYRGKDFLPPTVAAAL 518

Query: 1536 AERQEMTKQIQDVEEKMRRGAAEVAPKGEDGQALAGTLAEFYEAQARWGREISAEEHEKM 1357
            AERQE+TKQIQDVEEK R   AE  P G DGQA+AGTLAEFYEAQARWGREISAEE +KM
Sbjct: 519  AERQEITKQIQDVEEKTRSSPAEATPLGTDGQAVAGTLAEFYEAQARWGREISAEERDKM 578

Query: 1356 LEEASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFM 1177
            L+EA+RAK  RV K++EHKL +             KI  S +P  P DD ETIT+EER M
Sbjct: 579  LKEAARAKIDRVVKRLEHKLELSQAKKLKVEKILAKIVDSWIPAGPSDDLETITEEERVM 638

Query: 1176 FRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYES 1003
            +RRVGLRMK+YLPLGIRGVFDGVIENMHLHWKHRELVKLISK+K  A+VEETARLLEYES
Sbjct: 639  YRRVGLRMKSYLPLGIRGVFDGVIENMHLHWKHRELVKLISKEKELAFVEETARLLEYES 698

Query: 1002 GGILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISE 823
            GGILVAI+RVPKG+A+I+YRGKNYRRPISLRPRNLLTKAKALKR VALQR+EALSQH++ 
Sbjct: 699  GGILVAIDRVPKGYALIFYRGKNYRRPISLRPRNLLTKAKALKRRVALQRYEALSQHMTA 758

Query: 822  LEKTIGQMXXXXXXXXXXXXENARNLDN-SQHNHVTEFTQNKDE 694
            LE +I QM             N+ NL+   Q NHV+EF+Q++DE
Sbjct: 759  LETSIEQM-KRQIGDVGNADINSSNLETLDQFNHVSEFSQSEDE 801


>ref|XP_011072348.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 821

 Score =  945 bits (2442), Expect = 0.0
 Identities = 493/698 (70%), Positives = 560/698 (80%), Gaps = 21/698 (3%)
 Frame = -1

Query: 2721 KSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXSPVT---------------GEEKLGDL 2587
            + GT+AI+RIV RLRNLGLG             +  +               G+EKLGDL
Sbjct: 97   RGGTTAIDRIVLRLRNLGLGSDDEEEEEGEGGLAISSENADSNLHDSTNVEFGDEKLGDL 156

Query: 2586 LKRDWVRPDVMLIE--DKDDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIED 2413
            LKRDWVRPD +L+E  D D +++LPW           ED   VKKR +RAPTLAELT+ED
Sbjct: 157  LKRDWVRPDTILVENDDYDSDSLLPWERGVNEDEEMDEDRVAVKKRPMRAPTLAELTLED 216

Query: 2412 EELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHEI 2233
            EELRRLR++GMTLRER++V KAG+TGAVLEKIH+KWRK+ELVRLKFHE LAHDMKTAHEI
Sbjct: 217  EELRRLRRMGMTLRERVNVPKAGITGAVLEKIHDKWRKSELVRLKFHEDLAHDMKTAHEI 276

Query: 2232 VERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGND 2053
            VERRTGGLV WR+GSVMVVFRG+NYEGP SKPQ ++ E D LFVP+VSS +N + R  + 
Sbjct: 277  VERRTGGLVTWRSGSVMVVFRGTNYEGPISKPQRMNSEDDALFVPNVSSLDNSVTRTSDG 336

Query: 2052 ATSTLEKRESTLLGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPGY 1873
             +  +EK    +  R ++M+E+EAE+N LLDGLGPRFEDWWGTG+LPVDADLLPQTIPGY
Sbjct: 337  KSPVIEKSNPVISARAESMSEEEAEYNRLLDGLGPRFEDWWGTGVLPVDADLLPQTIPGY 396

Query: 1872 KTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAK 1693
            KTPFRLLP GMRPRLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLA +IIKLWEKSL+ K
Sbjct: 397  KTPFRLLPAGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAISIIKLWEKSLLVK 456

Query: 1692 IAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMTK 1513
            IAVKRGIQNTNNK+MAEE+K LTGGVLLLRNKYYIV+YRGKDFL  SVAAALAERQEMTK
Sbjct: 457  IAVKRGIQNTNNKIMAEELKKLTGGVLLLRNKYYIVMYRGKDFLSPSVAAALAERQEMTK 516

Query: 1512 QIQDVEEKMRRGAAEVAPKGEDGQALAGTLAEFYEAQARWGREISAEEHEKMLEEASRAK 1333
            QIQD+EEK+R G   V P  E+ +ALAGTLAEFYEAQARWG  ISAEEHEKM+EEASRAK
Sbjct: 517  QIQDIEEKVRGGPVAV-PVAEEKEALAGTLAEFYEAQARWGTNISAEEHEKMIEEASRAK 575

Query: 1332 NARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGLRM 1153
              RV ++ EHK+AI             KI AS VPV P DDQETITDEER M+RRVGLRM
Sbjct: 576  RDRVIRRFEHKIAIAQAKKLKAEKLLSKIVASWVPVSPSDDQETITDEERVMYRRVGLRM 635

Query: 1152 KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVAIE 979
            KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISK+K  A+VEETARLLEYESGGILVAIE
Sbjct: 636  KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKEKELAFVEETARLLEYESGGILVAIE 695

Query: 978  RVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIGQM 799
            RVPKGHA+IYYRGKNYRRPI+LRPRNLLTKAKALKR VALQR+EALSQHISELEKTI QM
Sbjct: 696  RVPKGHALIYYRGKNYRRPITLRPRNLLTKAKALKRRVALQRYEALSQHISELEKTIEQM 755

Query: 798  XXXXXXXXXXXXENARNLDNSQH--NHVTEFTQNKDEA 691
                         N+ NL+NS+H  +  +E ++++D+A
Sbjct: 756  --------KQEIGNSANLENSKHWNSEDSELSESEDDA 785


>ref|XP_010265125.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nelumbo nucifera]
          Length = 838

 Score =  943 bits (2438), Expect = 0.0
 Identities = 501/697 (71%), Positives = 564/697 (80%), Gaps = 10/697 (1%)
 Frame = -1

Query: 2754 DDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS--PVTGEEKLGDLLK 2581
            +D VESRYFDG  G SAIERI  RLRNLGLG                P++GEEKLGDLLK
Sbjct: 118  EDPVESRYFDGDKGRSAIERIAHRLRNLGLGSDDEDEEVGGESNEEMPLSGEEKLGDLLK 177

Query: 2580 RDWVRPDVMLIEDKDDE--TVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIEDEE 2407
            R W RPD +L ED+D++   +LPW           +   + KK+ V+APTLAELTIED E
Sbjct: 178  RTWSRPDSILHEDEDEKGKMLLPWERDEDDQSEEEDGRGLKKKKRVKAPTLAELTIEDAE 237

Query: 2406 LRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHEIVE 2227
            LRRLR LGMTLRER+++ KAGVT  +LEKIHEKWRK+ELVRLKFHETLAHDMKTA EIVE
Sbjct: 238  LRRLRTLGMTLRERVNIPKAGVTQVILEKIHEKWRKSELVRLKFHETLAHDMKTALEIVE 297

Query: 2226 RRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGNDAT 2047
            RRTGGLVIWR+GS+MVV+RGSNYE P S+ + V+ EG+ LFVPDVSS+ N I +  ND  
Sbjct: 298  RRTGGLVIWRSGSIMVVYRGSNYE-PFSRLKTVESEGNALFVPDVSSSANSISKINNDIM 356

Query: 2046 STLEKRESTLLG--RVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPGY 1873
            S  EK++  +    + ++MTE+EAE+N LLDGLGPRF DWWGTGILPVDADLLPQTIP Y
Sbjct: 357  SAPEKKDPGVQNPNQAESMTEEEAEYNSLLDGLGPRFVDWWGTGILPVDADLLPQTIPSY 416

Query: 1872 KTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAK 1693
            KTPFRLLPTGMRPRLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLAAAI+KLW+KSLVAK
Sbjct: 417  KTPFRLLPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIVKLWDKSLVAK 476

Query: 1692 IAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMTK 1513
            IAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKYYIVIYRGKDFLPTSVA ALAERQE+TK
Sbjct: 477  IAVKRGIQNTNNKLMAEELKKLTGGVLLLRNKYYIVIYRGKDFLPTSVAFALAERQELTK 536

Query: 1512 QIQDVEEKMRRGAAEVAPKGE-DGQALAGTLAEFYEAQARWGREISAEEHEKMLEEASRA 1336
            +IQDVEEK R GA   A   E  GQALAGTL+E+ EAQARWGREISAEEHEKM EEASRA
Sbjct: 537  EIQDVEEKARSGAVVSAHVEEIGGQALAGTLSEYREAQARWGREISAEEHEKMKEEASRA 596

Query: 1335 KNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGLR 1156
            KNA+  K+IEHKL +             KIE SMVPV P DDQETITDEERFMFRRVGLR
Sbjct: 597  KNAKAVKRIEHKLTVAQAKKLRAEKLLAKIEKSMVPVGPSDDQETITDEERFMFRRVGLR 656

Query: 1155 MKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVAI 982
            MKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK  ++VE+TARLLEYESGGILVAI
Sbjct: 657  MKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLSFVEDTARLLEYESGGILVAI 716

Query: 981  ERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIGQ 802
            ERVPKG+A+IYYRGKNY+RPISLRPRNLLTKAKALKR+VA+QRHEALSQHI+ELE+TI Q
Sbjct: 717  ERVPKGYALIYYRGKNYQRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITELERTIEQ 776

Query: 801  MXXXXXXXXXXXXENA-RNLDNSQHNHVTEFTQNKDE 694
            M            E+     D  + ++V+ FT+++DE
Sbjct: 777  MKSEIGMSKDVDYEDTWSEEDPRRFDNVSAFTESEDE 813


>ref|XP_007211308.1| hypothetical protein PRUPE_ppa001468mg [Prunus persica]
            gi|462407043|gb|EMJ12507.1| hypothetical protein
            PRUPE_ppa001468mg [Prunus persica]
          Length = 820

 Score =  939 bits (2428), Expect = 0.0
 Identities = 499/696 (71%), Positives = 558/696 (80%), Gaps = 13/696 (1%)
 Frame = -1

Query: 2739 SRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXSP------VTGEEKLGDLLKR 2578
            +RYFD   G SAIERIV RLRNLGLG                      +GEEKLGDLL+R
Sbjct: 108  TRYFDKNKGQSAIERIVLRLRNLGLGSDDEEEDDGLGLDGQDSMQPAESGEEKLGDLLQR 167

Query: 2577 DWVRPDVMLIEDK-DDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIEDEELR 2401
            +WVRPD +L E K +DE  LPW             G  ++KR V+AP+LAELTIEDEEL+
Sbjct: 168  EWVRPDYVLAEQKSNDEVALPWEKEDEISEEEEVKG--LRKRRVKAPSLAELTIEDEELK 225

Query: 2400 RLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHEIVERR 2221
            RLR++GM LRERISV KAG+T AVLEKIH+ WRK ELVRLKFHE LA DMKTAHEIVERR
Sbjct: 226  RLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKEELVRLKFHEVLALDMKTAHEIVERR 285

Query: 2220 TGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGNDATST 2041
            TGGLV+WR+GSVMVV+RGSNY+GPS K Q VDREG  LF+PDVSSA     R+GNDATS 
Sbjct: 286  TGGLVLWRSGSVMVVYRGSNYKGPS-KSQTVDREGGALFIPDVSSAETSATRSGNDATSG 344

Query: 2040 LEKRESTLL--GRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPGYKT 1867
             +  E  +     + NMTE+EAEFN LLD LGPRF +WWGTG+LPVDADLLP+TIPGYKT
Sbjct: 345  PDNNEKAVKIPAHLPNMTEEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGYKT 404

Query: 1866 PFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAKIA 1687
            PFRLLPTGMR RLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLA+AIIKLWEKS VAKIA
Sbjct: 405  PFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLASAIIKLWEKSSVAKIA 464

Query: 1686 VKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMTKQI 1507
            VKRGIQNTNNKLMAEE+KTLTGGVLLLRNKYYIV YRGKDFLPTSVAAALAERQE+TKQ+
Sbjct: 465  VKRGIQNTNNKLMAEELKTLTGGVLLLRNKYYIVFYRGKDFLPTSVAAALAERQELTKQV 524

Query: 1506 QDVEEKMRRGAAEVAPKG-EDGQALAGTLAEFYEAQARWGREISAEEHEKMLEEASRAKN 1330
            QDVEEKMR  A + A  G E+GQALAGTLAEFYEAQARWGREISAEE EKM+EE S+AKN
Sbjct: 525  QDVEEKMRIKAIDAASSGAEEGQALAGTLAEFYEAQARWGREISAEEREKMIEEDSKAKN 584

Query: 1329 ARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGLRMK 1150
            AR+ K+IEHKL +             KIE+SM+P  P  DQET+TDEER MFRRVGLRMK
Sbjct: 585  ARLVKRIEHKLGVAQAKKLRAEKLLSKIESSMLPAGPDYDQETVTDEERVMFRRVGLRMK 644

Query: 1149 AYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVAIER 976
            AYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQK  A+VE+TARLLE+ESGGILVAIER
Sbjct: 645  AYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFESGGILVAIER 704

Query: 975  VPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIGQMX 796
            VPKG+A+IYYRGKNY+RPI+LRPRNLLTKAKALKR+VA+QRHEALSQHISELEKTI QM 
Sbjct: 705  VPKGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAIQRHEALSQHISELEKTIEQMS 764

Query: 795  XXXXXXXXXXXENA-RNLDNSQHNHVTEFTQNKDEA 691
                       E+   + D  Q +  +EF Q++DEA
Sbjct: 765  SEIGVSEDIADESTWSSRDPDQIHGASEFVQSEDEA 800


>ref|XP_008240263.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Prunus mume]
          Length = 820

 Score =  937 bits (2421), Expect = 0.0
 Identities = 498/696 (71%), Positives = 556/696 (79%), Gaps = 13/696 (1%)
 Frame = -1

Query: 2739 SRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXSP------VTGEEKLGDLLKR 2578
            +RYFD   G SAIERIV RLRNLGLG                      +GEEKLGDLL+R
Sbjct: 108  TRYFDKNKGQSAIERIVLRLRNLGLGSDDEEEDDGLELDGQDSMQPAASGEEKLGDLLQR 167

Query: 2577 DWVRPDVMLIEDK-DDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIEDEELR 2401
            +WVRPD +L E K +DE  LPW             G  ++KR V+AP+LAELTIEDEEL+
Sbjct: 168  EWVRPDYVLAEQKSNDEVALPWEKEEEISEEEEVKG--LRKRRVKAPSLAELTIEDEELK 225

Query: 2400 RLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHEIVERR 2221
            RLR++GM LRERISV KAG+T AVLEKIH+ WRK ELVRLKFHE LA DMKTAHEIVERR
Sbjct: 226  RLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKEELVRLKFHEVLALDMKTAHEIVERR 285

Query: 2220 TGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGNDATST 2041
            TGGLV+WR+GSVMVV+RGSNY+GPS K Q VD EG  LF+PDVSSA     R+GNDATS 
Sbjct: 286  TGGLVLWRSGSVMVVYRGSNYKGPS-KSQTVDGEGGALFIPDVSSAETSATRSGNDATSG 344

Query: 2040 LEKRESTLL--GRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPGYKT 1867
             +  E  +     + NMTE+EAEFN LLD LGPRF +WWGTG+LPVDADLLP+TIPGYKT
Sbjct: 345  PDNTEKAVKIPAHLPNMTEEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGYKT 404

Query: 1866 PFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAKIA 1687
            PFRLLPTGMR RLTNAE+TNLRKLAKSLPCHFALGRNRNHQGLA+AIIKLWEKS VAKIA
Sbjct: 405  PFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLASAIIKLWEKSSVAKIA 464

Query: 1686 VKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMTKQI 1507
            VKRGIQNTNNKLMAEE+KTLTGGVLLLRNKYYIV YRGKDFLPTSVAAALAERQE+TKQ+
Sbjct: 465  VKRGIQNTNNKLMAEELKTLTGGVLLLRNKYYIVFYRGKDFLPTSVAAALAERQELTKQV 524

Query: 1506 QDVEEKMRRGAAEVAPKG-EDGQALAGTLAEFYEAQARWGREISAEEHEKMLEEASRAKN 1330
            QDVEEKMR  A + A  G E+GQALAGTLAEFYEAQARWGREISAEE EKM+EE S+AKN
Sbjct: 525  QDVEEKMRIKAIDTASSGAEEGQALAGTLAEFYEAQARWGREISAEEREKMIEEDSKAKN 584

Query: 1329 ARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGLRMK 1150
            AR+ K+IEHKL +             KIE+SM+P  P  DQET+TDEER MFRRVGLRMK
Sbjct: 585  ARLVKRIEHKLGVAQAKKLRAEKLLSKIESSMLPAGPDYDQETVTDEERVMFRRVGLRMK 644

Query: 1149 AYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVAIER 976
            AYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQK  A+VE+TARLLE+ESGGILVAIER
Sbjct: 645  AYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFESGGILVAIER 704

Query: 975  VPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIGQMX 796
            VPKG A+IYYRGKNY+RPI+LRPRNLLTKAKALKR+VA+QRHEALSQHISELEKTI QM 
Sbjct: 705  VPKGFALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISELEKTIEQMS 764

Query: 795  XXXXXXXXXXXENA-RNLDNSQHNHVTEFTQNKDEA 691
                       E+   + D  Q +  +EF Q++DEA
Sbjct: 765  SEIGVSEDIAYESTWSSRDPDQIHRASEFVQSEDEA 800


>ref|XP_012093011.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Jatropha curcas]
            gi|802797401|ref|XP_012093012.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            [Jatropha curcas] gi|643686960|gb|KDP20125.1|
            hypothetical protein JCGZ_05894 [Jatropha curcas]
          Length = 839

 Score =  937 bits (2421), Expect = 0.0
 Identities = 494/699 (70%), Positives = 562/699 (80%), Gaps = 17/699 (2%)
 Frame = -1

Query: 2727 DGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXSP------VTGEEKLGDLLKRDWVR 2566
            +GK G +AIERIV RLRNLGLG                     VTG+E+L DLL+R+WVR
Sbjct: 97   EGK-GQNAIERIVLRLRNLGLGSDDEDDDGEEDKGIDRGDKAEVTGDERLADLLQREWVR 155

Query: 2565 PDVMLI---EDKDDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIEDEELRRL 2395
            PD +     +++ D+ VLPW            +G   +KRTV+APTLAELTIEDEELRRL
Sbjct: 156  PDTIFSNRDDEESDDLVLPWQRKEIEREERGGEGGRERKRTVKAPTLAELTIEDEELRRL 215

Query: 2394 RQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHEIVERRTG 2215
            R++GM +RERISV KAG+T  VLEKIH+KWRK ELVRLKFHE LAHDMKTAHEI ERRTG
Sbjct: 216  RKMGMFVRERISVPKAGLTKDVLEKIHDKWRKQELVRLKFHEVLAHDMKTAHEITERRTG 275

Query: 2214 GLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGNDATSTLE 2035
            GLVIWRAGSVM+V+RGSNYEGP SKPQ+VD+EGD LF+PDVSS +   LRN +  +ST++
Sbjct: 276  GLVIWRAGSVMMVYRGSNYEGPPSKPQSVDKEGDALFIPDVSSPDTETLRNHDGVSSTVK 335

Query: 2034 KRESTL--LGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPGYKTPF 1861
            KRE  +  +   +NMTE+EAEFN LLD LGPRFE+WWGTGILPVDADLLP  IPGYKTPF
Sbjct: 336  KRELAIGRMNSAENMTEEEAEFNSLLDSLGPRFEEWWGTGILPVDADLLPPKIPGYKTPF 395

Query: 1860 RLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAKIAVK 1681
            RLLPTGMR RLTNAE+TNLRKLAK+LPCHFALGRNRNHQGLAAAI K+WEKSLVAKIAVK
Sbjct: 396  RLLPTGMRSRLTNAEMTNLRKLAKTLPCHFALGRNRNHQGLAAAIRKIWEKSLVAKIAVK 455

Query: 1680 RGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMTKQIQD 1501
            RGIQNTNNKLMA+E+K LTGG+LLLRNKYYIVIYRGKDFLPTSVAAALAERQE+TKQIQD
Sbjct: 456  RGIQNTNNKLMADELKMLTGGILLLRNKYYIVIYRGKDFLPTSVAAALAERQELTKQIQD 515

Query: 1500 VEEKMRRGAAEVAPKGE-DGQALAGTLAEFYEAQARWGREISAEEHEKMLEEASRAKNAR 1324
            VEEK+R    E A   E  G+ALAGTLAEFYEAQARWG+ ISAEE EKM+E+A+R+K AR
Sbjct: 516  VEEKVRSRGVETALSEEGQGKALAGTLAEFYEAQARWGKTISAEEREKMIEDAARSKRAR 575

Query: 1323 VFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGLRMKAY 1144
            V K+IEHKLA+             KIEASM+P  P  DQETITDEER MFRRVGLRMKAY
Sbjct: 576  VVKRIEHKLAVAQAKKLRAERLLSKIEASMLPSGPDYDQETITDEERAMFRRVGLRMKAY 635

Query: 1143 LPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVAIERVP 970
            LPLGIRGVFDGVIENMHLHWKHRELVKLISKQK  A+VE+TARLLEYESGGILVAIERVP
Sbjct: 636  LPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVP 695

Query: 969  KGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIGQMXXX 790
            KG A+IYYRGKNYRRPI+LRPRNLLTKAKALKR+VA+QRHEALSQHISELE+TI +M   
Sbjct: 696  KGFALIYYRGKNYRRPINLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEEMKKE 755

Query: 789  XXXXXXXXXENARNLDNSQH---NHVTEFTQNKDEALWI 682
                     EN    +  +H   N++++FTQ++DE  +I
Sbjct: 756  IGFSPEEEDENNWTSEPKEHGRLNNLSDFTQSEDEPSFI 794


>ref|XP_012440291.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Gossypium raimondii]
          Length = 854

 Score =  936 bits (2420), Expect = 0.0
 Identities = 493/698 (70%), Positives = 560/698 (80%), Gaps = 7/698 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            DG+G    E+RY +   G SAI+RIV RLRNLGLG                 PVTGEE+L
Sbjct: 94   DGNGKADSETRYLN--KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVTGEERL 151

Query: 2595 GDLLKRDWVRPDVMLIEDKDDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIE 2416
            GDLLKR+WVRPD  LIE + +E VLPW           ++G ++KKRTV+APTLAELTIE
Sbjct: 152  GDLLKREWVRPDTRLIEKEKEEAVLPWEREEAVVEVVVKEGGLLKKRTVKAPTLAELTIE 211

Query: 2415 DEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHE 2236
            DEELRRLR++GM LRERI+V KAG+T  VLEKIH+KWRK ELVRLKFHE LA DM+TAHE
Sbjct: 212  DEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHE 271

Query: 2235 IVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGN 2056
            IVERRTGGLVIWR+GSVMVV+RGSNYEGPS        EG+ LF+PDVSSA       G+
Sbjct: 272  IVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKRESETGS 328

Query: 2055 DATSTLEKRESTLLGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPG 1876
             +TS    +      R ++MTE+EAE+N LLDGLGPRF +WWGTGILPVDADLLP  IPG
Sbjct: 329  GSTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 388

Query: 1875 YKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 1696
            YKTPFRLLP GMRPRLTNAE+TNLRK+AKSLPCHFALGRNRNHQGLAAAIIKLWEKS+VA
Sbjct: 389  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVA 448

Query: 1695 KIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMT 1516
            KIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKY+IVIYRGKDFLPT+VAAALAERQ++T
Sbjct: 449  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 508

Query: 1515 KQIQDVEEKMRRGAAEVAPKGED-GQALAGTLAEFYEAQARWGREISAEEHEKMLEEASR 1339
            KQIQD EEK+R  A E A  GED GQA AGTLAEFYEAQARWGR+ISAEE EKM+EEAS+
Sbjct: 509  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 568

Query: 1338 AKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGL 1159
            AK+A++ K++EHKLAI             KIEASM+P  P  DQETITDEER MFRRVGL
Sbjct: 569  AKHAKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 628

Query: 1158 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVA 985
            RMK YLPLG+RGVFDGVIENMHLHWKHRELVKLISKQK  A+VE++ARLLEYESGGILVA
Sbjct: 629  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 688

Query: 984  IERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIG 805
            IERVPKG+A+IYYRGKNYRRPIS+RPRNLLTKAKALKR+VA+QRHEALSQHIS+LE TI 
Sbjct: 689  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 748

Query: 804  QMXXXXXXXXXXXXENARNL-DNSQHNHVTEFTQNKDE 694
            QM            +N R+   + Q + V+EFT+++DE
Sbjct: 749  QMKKEIDASEDGGDDNNRSSGKHGQFDPVSEFTESEDE 786


>ref|XP_012440292.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Gossypium raimondii]
          Length = 854

 Score =  936 bits (2419), Expect = 0.0
 Identities = 493/698 (70%), Positives = 559/698 (80%), Gaps = 7/698 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            DG+G    E+RY +   G SAI+RIV RLRNLGLG                 PVTGEE+L
Sbjct: 94   DGNGKADSETRYLN--KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVTGEERL 151

Query: 2595 GDLLKRDWVRPDVMLIEDKDDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIE 2416
            GDLLKR+WVRPD  LIE + +E VLPW           ++G ++KKRTV+APTLAELTIE
Sbjct: 152  GDLLKREWVRPDTRLIEKEKEEAVLPWEREEAVVEVVVKEGGLLKKRTVKAPTLAELTIE 211

Query: 2415 DEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHE 2236
            DEELRRLR++GM LRERI+V KAG+T  VLEKIH+KWRK ELVRLKFHE LA DM+TAHE
Sbjct: 212  DEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHE 271

Query: 2235 IVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGN 2056
            IVERRTGGLVIWR+GSVMVV+RGSNYEGPS        EG+ LF+PDVSSA       G+
Sbjct: 272  IVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKRESETGS 328

Query: 2055 DATSTLEKRESTLLGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPG 1876
             +TS    +      R ++MTE+EAE+N LLDGLGPRF +WWGTGILPVDADLLP  IPG
Sbjct: 329  GSTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 388

Query: 1875 YKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 1696
            YKTPFRLLP GMRPRLTNAE+TNLRK+AKSLPCHFALGRNRNHQGLAAAIIKLWEKS+VA
Sbjct: 389  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVA 448

Query: 1695 KIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMT 1516
            KIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKY+IVIYRGKDFLPT+VAAALAERQ++T
Sbjct: 449  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 508

Query: 1515 KQIQDVEEKMRRGAAEVAPKGED-GQALAGTLAEFYEAQARWGREISAEEHEKMLEEASR 1339
            KQIQD EEK+R  A E A  GED GQA AGTLAEFYEAQARWGR+ISAEE EKM+EEAS+
Sbjct: 509  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 568

Query: 1338 AKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGL 1159
            AK+A++ K++EHKLAI             KIEASM+P  P  DQETITDEER MFRRVGL
Sbjct: 569  AKHAKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 628

Query: 1158 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVA 985
            RMK YLPLG+RGVFDGVIENMHLHWKHRELVKLISKQK  A+VE++ARLLEYESGGILVA
Sbjct: 629  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 688

Query: 984  IERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIG 805
            IERVPKG+A+IYYRGKNYRRPIS+RPRNLLTKAKALKR+VA+QRHEALSQHIS+LE TI 
Sbjct: 689  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 748

Query: 804  QMXXXXXXXXXXXXENARNL-DNSQHNHVTEFTQNKDE 694
            QM            +N R    + Q + V+EFT+++DE
Sbjct: 749  QMKKEIDASEDGDDDNNRGSGKHGQFDPVSEFTESEDE 786


>ref|XP_009767017.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana sylvestris]
            gi|698444931|ref|XP_009767027.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            [Nicotiana sylvestris]
          Length = 831

 Score =  936 bits (2419), Expect = 0.0
 Identities = 495/704 (70%), Positives = 558/704 (79%), Gaps = 16/704 (2%)
 Frame = -1

Query: 2754 DDRVESRYFD---GKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS-------PVTGE 2605
            D   E++YFD    + GT+AIERIV RLRNLGLG             +       P  GE
Sbjct: 100  DSNTETKYFDENTSRVGTTAIERIVLRLRNLGLGSDDEDENEEEENSNLNSSSAVPSNGE 159

Query: 2604 E-KLGDLLKRDWVRPDVMLIEDKDDE---TVLPWXXXXXXXXXXXEDGRVVKKRTVRAPT 2437
            E KLGDLLKRDWVRPD++L E  DDE   T+LPW           E+ R  K+RTV+APT
Sbjct: 160  EEKLGDLLKRDWVRPDMILGESDDDEGDDTLLPWERNVEEGEVVVEEQRGGKRRTVKAPT 219

Query: 2436 LAELTIEDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAH 2257
            LAELTIEDEELRRLR+ GMTLRER+SV KAG+TGAVLEKIH+ WRK ELVRLKFHE LAH
Sbjct: 220  LAELTIEDEELRRLRRNGMTLRERVSVPKAGITGAVLEKIHDAWRKNELVRLKFHEVLAH 279

Query: 2256 DMKTAHEIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANN 2077
            DM+T HEIVERRTGGLVIWRAGSVMVV+RGSNYEGPS + ++V+  G+ LFVPDVSS + 
Sbjct: 280  DMRTGHEIVERRTGGLVIWRAGSVMVVYRGSNYEGPSLRSRSVNENGNALFVPDVSS-DK 338

Query: 2076 PILRNGNDATSTLEKRESTLLGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADL 1897
             I ++   +   +E R      RVQ+MTE+EAEFN LLDGLGPR+EDWWGTG++PVDADL
Sbjct: 339  SIAKDDKSSNPVIENRNQVHPHRVQSMTEEEAEFNRLLDGLGPRYEDWWGTGVIPVDADL 398

Query: 1896 LPQTIPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKL 1717
            LPQTIPGYKTPFRLLPTGMR RLTNAE+TNLRK+AKSLPCHFALGRNRNHQGLAAAIIKL
Sbjct: 399  LPQTIPGYKTPFRLLPTGMRSRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKL 458

Query: 1716 WEKSLVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAAL 1537
            WEKSLV KIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKYYI+ YRGKDFLP +VAAAL
Sbjct: 459  WEKSLVVKIAVKRGIQNTNNKLMAEELKKLTGGVLLLRNKYYIIFYRGKDFLPPTVAAAL 518

Query: 1536 AERQEMTKQIQDVEEKMRRGAAEVAPKGEDGQALAGTLAEFYEAQARWGREISAEEHEKM 1357
            AERQE+TKQIQDVEEK R G AE AP   D QA+AGTLAEFYEAQARWGREIS EE EKM
Sbjct: 519  AERQEITKQIQDVEEKTRSGPAEPAPLATDAQAVAGTLAEFYEAQARWGREISDEEREKM 578

Query: 1356 LEEASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFM 1177
            L+EA+RAK ARV K++EHKL +             KI  S +P  P DD ETIT+EER M
Sbjct: 579  LKEAARAKIARVVKRLEHKLELSQAKKLKAEKILAKIVDSWIPAGPSDDLETITEEERVM 638

Query: 1176 FRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYES 1003
            +RRVGLRMK+YLPLGIRGVFDGVIENMHLHWKHRELVKLISK+K  A+VEETARLLEYES
Sbjct: 639  YRRVGLRMKSYLPLGIRGVFDGVIENMHLHWKHRELVKLISKEKELAFVEETARLLEYES 698

Query: 1002 GGILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISE 823
            GGILVAI+RVPKG+A+I+YRGKNYRRPISLRPRNLLTKAKALKR VALQR+EALSQH++E
Sbjct: 699  GGILVAIDRVPKGYALIFYRGKNYRRPISLRPRNLLTKAKALKRRVALQRYEALSQHMTE 758

Query: 822  LEKTIGQMXXXXXXXXXXXXENARNLDNSQHNHVTEFTQNKDEA 691
            LE +I Q              N+      Q NHV+EF+Q++DEA
Sbjct: 759  LETSIEQTKRQIGDVGNAGINNSNLEALIQFNHVSEFSQSEDEA 802


>ref|XP_012440290.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii]
            gi|763785914|gb|KJB52985.1| hypothetical protein
            B456_008G286900 [Gossypium raimondii]
          Length = 868

 Score =  932 bits (2408), Expect = 0.0
 Identities = 495/712 (69%), Positives = 562/712 (78%), Gaps = 21/712 (2%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            DG+G    E+RY +   G SAI+RIV RLRNLGLG                 PVTGEE+L
Sbjct: 94   DGNGKADSETRYLN--KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVTGEERL 151

Query: 2595 GDLLKRDWVRPDVMLIEDKDDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIE 2416
            GDLLKR+WVRPD  LIE + +E VLPW           ++G ++KKRTV+APTLAELTIE
Sbjct: 152  GDLLKREWVRPDTRLIEKEKEEAVLPWEREEAVVEVVVKEGGLLKKRTVKAPTLAELTIE 211

Query: 2415 DEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHE 2236
            DEELRRLR++GM LRERI+V KAG+T  VLEKIH+KWRK ELVRLKFHE LA DM+TAHE
Sbjct: 212  DEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHE 271

Query: 2235 IVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGN 2056
            IVERRTGGLVIWR+GSVMVV+RGSNYEGPS        EG+ LF+PDVSSA       G+
Sbjct: 272  IVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKRESETGS 328

Query: 2055 DATSTLEKRESTLLGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPG 1876
             +TS    +      R ++MTE+EAE+N LLDGLGPRF +WWGTGILPVDADLLP  IPG
Sbjct: 329  GSTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 388

Query: 1875 YKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 1696
            YKTPFRLLP GMRPRLTNAE+TNLRK+AKSLPCHFALGRNRNHQGLAAAIIKLWEKS+VA
Sbjct: 389  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVA 448

Query: 1695 KIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMT 1516
            KIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKY+IVIYRGKDFLPT+VAAALAERQ++T
Sbjct: 449  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 508

Query: 1515 KQIQDVEEKMRRGAAEVAPKGED-GQALAGTLAEFYEAQARWGREISAEEHEKMLEEASR 1339
            KQIQD EEK+R  A E A  GED GQA AGTLAEFYEAQARWGR+ISAEE EKM+EEAS+
Sbjct: 509  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 568

Query: 1338 AKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGL 1159
            AK+A++ K++EHKLAI             KIEASM+P  P  DQETITDEER MFRRVGL
Sbjct: 569  AKHAKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 628

Query: 1158 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVA 985
            RMK YLPLG+RGVFDGVIENMHLHWKHRELVKLISKQK  A+VE++ARLLEYESGGILVA
Sbjct: 629  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 688

Query: 984  IERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIG 805
            IERVPKG+A+IYYRGKNYRRPIS+RPRNLLTKAKALKR+VA+QRHEALSQHIS+LE TI 
Sbjct: 689  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 748

Query: 804  QMXXXXXXXXXXXXENARNL--------DNS-------QHNHVTEFTQNKDE 694
            QM            +N R+         DN+       Q + V+EFT+++DE
Sbjct: 749  QMKKEIDASEDGGDDNNRSSGEHGQFDDDNNRGSGKHGQFDPVSEFTESEDE 800


>ref|XP_008374754.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
          Length = 827

 Score =  931 bits (2406), Expect = 0.0
 Identities = 499/703 (70%), Positives = 557/703 (79%), Gaps = 12/703 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXSP-----VTGEE 2602
            DG  D    +RYFD   G SAIERIVFRLRNL LG                     +GEE
Sbjct: 102  DGKADS---TRYFDKNKGQSAIERIVFRLRNLRLGSDDEEEDDGIGLDGQDSVPAASGEE 158

Query: 2601 KLGDLLKRDWVRPDVMLIEDKD-DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAEL 2425
            KLGDLL+R+WVRPD +L E+K  DE  LPW           E+ + ++KR  +AP+LAEL
Sbjct: 159  KLGDLLQREWVRPDYVLEEEKSADEVALPWEKEEEEEVNDKEEVKGLRKRRGKAPSLAEL 218

Query: 2424 TIEDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKT 2245
            TIEDEEL+RLR++GM LRERISV KAG+T AVLEKIH+ WRK ELVRLKFHE LA DMKT
Sbjct: 219  TIEDEELKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKTELVRLKFHEVLALDMKT 278

Query: 2244 AHEIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILR 2065
            AHEIVERRTGGLV+WR+GSVMVV+RGSNY+GPS   Q VD E   LF+PDVSSA   ++R
Sbjct: 279  AHEIVERRTGGLVLWRSGSVMVVYRGSNYKGPSQS-QTVDGERGGLFIPDVSSAETSVMR 337

Query: 2064 NGNDATSTLEKRESTLL--GRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLP 1891
            +GNDATS  +K E  L    RV NMTE+EAEF+ LLD LGPRFE+WWGTG+LPVDADLLP
Sbjct: 338  SGNDATSGPDKTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFEEWWGTGVLPVDADLLP 397

Query: 1890 QTIPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWE 1711
            +TIPGYKTPFRLLPTGMR RLTNAE+T LRKLAKSLPCHFALGRNRNHQGLA AIIKLWE
Sbjct: 398  KTIPGYKTPFRLLPTGMRSRLTNAEMTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWE 457

Query: 1710 KSLVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAE 1531
            KS VAKIAVKRGIQNTNNKLMAEEIK LTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAE
Sbjct: 458  KSSVAKIAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAE 517

Query: 1530 RQEMTKQIQDVEEKMRRGAAEVAPKGE-DGQALAGTLAEFYEAQARWGREISAEEHEKML 1354
            RQE+TKQ+QDVEEKMR  A + A  G  +GQALAGTLAEFYEAQARWGREISAEE EKM+
Sbjct: 518  RQELTKQVQDVEEKMRIKAIDAASSGAVEGQALAGTLAEFYEAQARWGREISAEEREKMI 577

Query: 1353 EEASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMF 1174
            EE SRAKNA++ ++IEHKL +             KIE+ M+P  P  DQETITDEER MF
Sbjct: 578  EEDSRAKNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERVMF 637

Query: 1173 RRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESG 1000
            RRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQK  A+VE+TARLLEYESG
Sbjct: 638  RRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESG 697

Query: 999  GILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISEL 820
            GILVAIERVPKG+A+IYYRGKNYRRPI+LRPRNLLTKAKALKR+VA+QRHEALSQHISEL
Sbjct: 698  GILVAIERVPKGYALIYYRGKNYRRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISEL 757

Query: 819  EKTIGQMXXXXXXXXXXXXENA-RNLDNSQHNHVTEFTQNKDE 694
            EK I QM            E++  + D  Q +   E  Q++DE
Sbjct: 758  EKNIEQMKSQVGISEDDVDESSWSSRDPEQIHRALELVQSEDE 800


>ref|XP_011045860.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Populus euphratica]
          Length = 802

 Score =  927 bits (2396), Expect = 0.0
 Identities = 489/701 (69%), Positives = 557/701 (79%), Gaps = 18/701 (2%)
 Frame = -1

Query: 2733 YFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS----PVTGEEKLGDLLKRDWVR 2566
            YF    G +AIERIV RLRNLGLG                   +TGEE+LGDLLKR+WVR
Sbjct: 89   YFSNDKGQNAIERIVLRLRNLGLGSDDEDELEGLEGSEINGGGLTGEERLGDLLKREWVR 148

Query: 2565 PDVMLIEDKD----DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIEDEELRR 2398
            PD ++  + +    DE+VLPW                 +KR V+APTLAELTIEDEELRR
Sbjct: 149  PDTVVFSNDEGSDSDESVLPWEREESGAVEMEGGIESGRKRRVKAPTLAELTIEDEELRR 208

Query: 2397 LRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHEIVERRT 2218
            LR++GM +RERIS+ KAG+T AVLE IH++WRK ELVRLKFHE LAHDMKTAHEIVERRT
Sbjct: 209  LRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRT 268

Query: 2217 GGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGNDATSTL 2038
            GGLVIWRAGSVMVVFRG+NY+GP SK Q  DREGD LFVPDVSS ++ I R+ N ATS+ 
Sbjct: 269  GGLVIWRAGSVMVVFRGTNYQGPPSKLQPADREGDALFVPDVSSTDSVITRSSNIATSSS 328

Query: 2037 EKRESTLLGRV----QNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPGYK 1870
            EK  S L+ R+    +NMTE+EAE N LLDGLGPRFE+WWGTG+LPVDADLLP  +PGYK
Sbjct: 329  EK--SKLVMRITEPTENMTEEEAELNSLLDGLGPRFEEWWGTGLLPVDADLLPPKVPGYK 386

Query: 1869 TPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAKI 1690
            TPFRLLP GMR RLTNAE+TN+RKLAK+LPCHFALGRNRNHQGLA AI+KLWEKSLVAKI
Sbjct: 387  TPFRLLPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKI 446

Query: 1689 AVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMTKQ 1510
            AVKRGIQNTNNKLMA+E+K LTGGVLLLRNKYYIVI+RGKDFLP SVAAALAERQE TKQ
Sbjct: 447  AVKRGIQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAERQEATKQ 506

Query: 1509 IQDVEEKMRRGAAEVAPKGED-GQALAGTLAEFYEAQARWGREISAEEHEKMLEEASRAK 1333
            IQDVEE++R  + E AP GED G+ALAGTLAEFYEAQARWGR+IS EE EKM+EEAS+AK
Sbjct: 507  IQDVEERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDISTEEREKMIEEASKAK 566

Query: 1332 NARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGLRM 1153
             AR+ K+ EHKLAI             KIE +MVP  P  DQETI++EER MFRRVGLRM
Sbjct: 567  TARLVKRTEHKLAIAQAKKLRAERLLSKIETTMVPSGPDFDQETISEEERVMFRRVGLRM 626

Query: 1152 KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVAIE 979
            KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK  A+VE+TA+LLEYESGG+LVAIE
Sbjct: 627  KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIE 686

Query: 978  RVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIGQM 799
            RVPKG A+IYYRGKNYRRPIS+RPRNLLTKAKALKR+VA+QRHEALSQHI ELEK I +M
Sbjct: 687  RVPKGFALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEM 746

Query: 798  XXXXXXXXXXXXENARNLDNSQH---NHVTEFTQNKDEALW 685
                        EN  N  + +H   N+V++ TQ++D+A +
Sbjct: 747  ------GLSKEEENENNWSSEEHAPLNNVSKLTQSEDKAFF 781


>ref|XP_011045859.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Populus euphratica]
          Length = 806

 Score =  927 bits (2396), Expect = 0.0
 Identities = 489/701 (69%), Positives = 557/701 (79%), Gaps = 18/701 (2%)
 Frame = -1

Query: 2733 YFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS----PVTGEEKLGDLLKRDWVR 2566
            YF    G +AIERIV RLRNLGLG                   +TGEE+LGDLLKR+WVR
Sbjct: 89   YFSNDKGQNAIERIVLRLRNLGLGSDDEDELEGLEGSEINGGGLTGEERLGDLLKREWVR 148

Query: 2565 PDVMLIEDKD----DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIEDEELRR 2398
            PD ++  + +    DE+VLPW                 +KR V+APTLAELTIEDEELRR
Sbjct: 149  PDTVVFSNDEGSDSDESVLPWEREESGAVEMEGGIESGRKRRVKAPTLAELTIEDEELRR 208

Query: 2397 LRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHEIVERRT 2218
            LR++GM +RERIS+ KAG+T AVLE IH++WRK ELVRLKFHE LAHDMKTAHEIVERRT
Sbjct: 209  LRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRT 268

Query: 2217 GGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGNDATSTL 2038
            GGLVIWRAGSVMVVFRG+NY+GP SK Q  DREGD LFVPDVSS ++ I R+ N ATS+ 
Sbjct: 269  GGLVIWRAGSVMVVFRGTNYQGPPSKLQPADREGDALFVPDVSSTDSVITRSSNIATSSS 328

Query: 2037 EKRESTLLGRV----QNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPGYK 1870
            EK  S L+ R+    +NMTE+EAE N LLDGLGPRFE+WWGTG+LPVDADLLP  +PGYK
Sbjct: 329  EK--SKLVMRITEPTENMTEEEAELNSLLDGLGPRFEEWWGTGLLPVDADLLPPKVPGYK 386

Query: 1869 TPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAKI 1690
            TPFRLLP GMR RLTNAE+TN+RKLAK+LPCHFALGRNRNHQGLA AI+KLWEKSLVAKI
Sbjct: 387  TPFRLLPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKI 446

Query: 1689 AVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMTKQ 1510
            AVKRGIQNTNNKLMA+E+K LTGGVLLLRNKYYIVI+RGKDFLP SVAAALAERQE TKQ
Sbjct: 447  AVKRGIQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAERQEATKQ 506

Query: 1509 IQDVEEKMRRGAAEVAPKGED-GQALAGTLAEFYEAQARWGREISAEEHEKMLEEASRAK 1333
            IQDVEE++R  + E AP GED G+ALAGTLAEFYEAQARWGR+IS EE EKM+EEAS+AK
Sbjct: 507  IQDVEERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDISTEEREKMIEEASKAK 566

Query: 1332 NARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGLRM 1153
             AR+ K+ EHKLAI             KIE +MVP  P  DQETI++EER MFRRVGLRM
Sbjct: 567  TARLVKRTEHKLAIAQAKKLRAERLLSKIETTMVPSGPDFDQETISEEERVMFRRVGLRM 626

Query: 1152 KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVAIE 979
            KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK  A+VE+TA+LLEYESGG+LVAIE
Sbjct: 627  KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIE 686

Query: 978  RVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIGQM 799
            RVPKG A+IYYRGKNYRRPIS+RPRNLLTKAKALKR+VA+QRHEALSQHI ELEK I +M
Sbjct: 687  RVPKGFALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEM 746

Query: 798  XXXXXXXXXXXXENARNLDNSQH---NHVTEFTQNKDEALW 685
                        EN  N  + +H   N+V++ TQ++D+A +
Sbjct: 747  --VKEMGLSKEEENENNWSSEEHAPLNNVSKLTQSEDKAFF 785


>ref|XP_009347186.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Pyrus x bretschneideri]
          Length = 832

 Score =  927 bits (2395), Expect = 0.0
 Identities = 498/703 (70%), Positives = 558/703 (79%), Gaps = 12/703 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS----PV-TGEE 2602
            DG  D    +RYFD   G +AIERIVFRLRNLGLG                  PV +GEE
Sbjct: 105  DGKADS---TRYFDKDKGQNAIERIVFRLRNLGLGSDDEGEDDGIGLDGQDSVPVASGEE 161

Query: 2601 KLGDLLKRDWVRPDVMLIEDKD-DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAEL 2425
            KLGDLL+R+WVRPD +L E+K  DE  LPW           E+ + ++KR  +AP+LAEL
Sbjct: 162  KLGDLLQREWVRPDYVLEEEKSADEVALPWEKEEEEEVNDKEEVKGLRKRRGKAPSLAEL 221

Query: 2424 TIEDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKT 2245
            TIEDEEL+RLR++GM LRERISV KAG+T AVLEKIH+ WRK ELVRLKFHE LA DMKT
Sbjct: 222  TIEDEELKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKTELVRLKFHEVLALDMKT 281

Query: 2244 AHEIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILR 2065
            AHEIVERRTGGLV+WR+GSVMVV+RGSNY+GPS   Q VD E   LF+PDVSSA   + R
Sbjct: 282  AHEIVERRTGGLVLWRSGSVMVVYRGSNYKGPSQS-QTVDGERGGLFIPDVSSAETSVTR 340

Query: 2064 NGNDATSTLEKRESTLL--GRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLP 1891
            +GNDATS  +  E  L    RV NMTE+EAEF+ LLD LGPRFE+WWGTG+LPVDADLLP
Sbjct: 341  SGNDATSGPDNTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFEEWWGTGVLPVDADLLP 400

Query: 1890 QTIPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWE 1711
            +TIPGYKTPFRLLPTGMR RLTNAE+T LRKLAKSLPCHFALGRNRNHQGLA AIIKLWE
Sbjct: 401  KTIPGYKTPFRLLPTGMRSRLTNAEMTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWE 460

Query: 1710 KSLVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAE 1531
            KS VAKIAVKRGIQNTNNKLMAEEIK LTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAE
Sbjct: 461  KSSVAKIAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAE 520

Query: 1530 RQEMTKQIQDVEEKMRRGAAEVAPKGE-DGQALAGTLAEFYEAQARWGREISAEEHEKML 1354
            RQE+TKQ+QDVEEKMR  A + A  G  +GQALAGTLAEFYEAQARWGREISAEE E+M+
Sbjct: 521  RQELTKQVQDVEEKMRIKAIDAASTGAVEGQALAGTLAEFYEAQARWGREISAEERERMI 580

Query: 1353 EEASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMF 1174
            EE SRAKNA++ ++IEHKL +             KIE+ M+P  P  DQETITDEER MF
Sbjct: 581  EEDSRAKNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERVMF 640

Query: 1173 RRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESG 1000
            RRVGLRMKAYLPLGIRGVFDGV+ENMHLHWKHRELVKLISKQK  A+VE+TARLLEYESG
Sbjct: 641  RRVGLRMKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESG 700

Query: 999  GILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISEL 820
            GILVAIERVPKG+A+IYYRGKNY+RPI+LRPRNLLTKAKALKR+VA+QRHEALSQHISEL
Sbjct: 701  GILVAIERVPKGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISEL 760

Query: 819  EKTIGQMXXXXXXXXXXXXENA-RNLDNSQHNHVTEFTQNKDE 694
            EK I QM            E++  + D  Q +   E  Q++DE
Sbjct: 761  EKNIEQMKSQVGISEDDVDESSWSSRDPEQIHRALELVQSEDE 803


>gb|KHG01961.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 823

 Score =  924 bits (2387), Expect = 0.0
 Identities = 488/694 (70%), Positives = 552/694 (79%), Gaps = 7/694 (1%)
 Frame = -1

Query: 2766 DGDGDDRVESRYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS---PVTGEEKL 2596
            DG+G    E+RY +   G SAI+RIV RLRNLGLG                 PV GEE+L
Sbjct: 95   DGNGKVDSETRYLN--KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVIGEERL 152

Query: 2595 GDLLKRDWVRPDVMLIEDKDDETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTLAELTIE 2416
            GDLLKR+WVRPD  LIE + +E VLPW           ++G ++KKRTV+APTLAELTIE
Sbjct: 153  GDLLKREWVRPDTRLIEKEKEEAVLPWEREEAVVEVVVKEGGLLKKRTVKAPTLAELTIE 212

Query: 2415 DEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHDMKTAHE 2236
            DEELRRLR++GM LRERI+V KAG+T  VLEKIH+KWRK ELVRLKFHE LA DM+TAHE
Sbjct: 213  DEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHE 272

Query: 2235 IVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNPILRNGN 2056
            IVERRTGGLVIWR+GSVMVV+RGSNYEGPS        EG+ LF+PDVSSA       G+
Sbjct: 273  IVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKRESETGS 329

Query: 2055 DATSTLEKRESTLLGRVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDADLLPQTIPG 1876
             +TS    +        ++MTE+EAE+N LLDGLGPRF +WWGTGILPVDADLLP  IPG
Sbjct: 330  ASTSEKSDKVVVKPECSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 389

Query: 1875 YKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 1696
            YKTPFRLLP GMRPRLTNAE+TNLRK+AKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA
Sbjct: 390  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 449

Query: 1695 KIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQEMT 1516
            KIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKY+IVIYRGKDFLPT+VAAALAERQ++T
Sbjct: 450  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 509

Query: 1515 KQIQDVEEKMRRGAAEVAPKGED-GQALAGTLAEFYEAQARWGREISAEEHEKMLEEASR 1339
            KQIQD EEK+R  A E A  GED GQA AGTLAEFYEAQARWGR+ISAEE EKM+EEAS+
Sbjct: 510  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 569

Query: 1338 AKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDDQETITDEERFMFRRVGL 1159
            AK+A++ K++EHKLAI             KIEASM+P  P  DQETITDEER MFRRVGL
Sbjct: 570  AKHAKLIKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 629

Query: 1158 RMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYVEETARLLEYESGGILVA 985
            RMK YLPLG+RGVFDGVIENMHLHWKHRELVKLISKQK  A+VE++ARLLEYESGGILVA
Sbjct: 630  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 689

Query: 984  IERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQRHEALSQHISELEKTIG 805
            IERVPKG+A+IYYRGKNYRRPIS+RPRNLLTKAKALKR+VA+QRHEAL QHIS+LE TI 
Sbjct: 690  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALGQHISKLENTIE 749

Query: 804  QMXXXXXXXXXXXXENARNL-DNSQHNHVTEFTQ 706
            QM            +N R   ++ Q + V+E T+
Sbjct: 750  QMKKEIGASEDGDDDNNRGSGEHGQFDPVSELTE 783


>ref|XP_010094746.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis] gi|587867514|gb|EXB56911.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 838

 Score =  919 bits (2375), Expect = 0.0
 Identities = 492/714 (68%), Positives = 562/714 (78%), Gaps = 23/714 (3%)
 Frame = -1

Query: 2766 DGDGDDRVES-RYFDGKSGTSAIERIVFRLRNLGLGXXXXXXXXXXXXXS-------PVT 2611
            D D  DR ++  Y D   G +AIERIV RLRNLGLG                     PVT
Sbjct: 103  DRDRTDRPDTVGYVDRDRGRNAIERIVLRLRNLGLGSDDEDEDDKEGDIGLDGQDAMPVT 162

Query: 2610 GEEKLGDLLKRDWVRPDVMLIEDKD-DETVLPWXXXXXXXXXXXEDGRVVKKRTVRAPTL 2434
            GEEKLGDLL+R+W+RPD +L E++  D+  LPW              R ++KR V APTL
Sbjct: 163  GEEKLGDLLRREWIRPDFVLEEEESKDDLTLPWEREEEEKGVDEGT-RELRKRRVNAPTL 221

Query: 2433 AELTIEDEELRRLRQLGMTLRERISVAKAGVTGAVLEKIHEKWRKAELVRLKFHETLAHD 2254
            AELTIEDEELRRLR++GM LR+RISV KAG+T AVLEKIH+KWRK ELVRLKFHE LAHD
Sbjct: 222  AELTIEDEELRRLRRMGMFLRDRISVPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHD 281

Query: 2253 MKTAHEIVERRTGGLVIWRAGSVMVVFRGSNYEGPSSKPQAVDREGDTLFVPDVSSANNP 2074
            MKTAHEIVERRTGGLV WR+GSVMVV+RGSNYEGP  K Q V++E D LF+PDVSSA N 
Sbjct: 282  MKTAHEIVERRTGGLVTWRSGSVMVVYRGSNYEGPP-KTQPVNKERDALFIPDVSSAENF 340

Query: 2073 ILRNGNDATSTLEKRESTLLG--RVQNMTEDEAEFNGLLDGLGPRFEDWWGTGILPVDAD 1900
            + R+G+  TS  EK E+ +     VQNMTE+EAEFN LLD LGPRF++WWGTG++PVDAD
Sbjct: 341  LTRSGDSLTSNAEKSETPVRNPVSVQNMTEEEAEFNSLLDDLGPRFDEWWGTGVIPVDAD 400

Query: 1899 LLPQTIPGYKTPFRLLPTGMRPRLTNAELTNLRKLAKSLPCHFALGRNRNHQGLAAAIIK 1720
            LLP  IPGYKTPFRLLPTGMR RLTN E+TNLRK+AKSLP HFALGRNRNHQGLAAAIIK
Sbjct: 401  LLPPKIPGYKTPFRLLPTGMRSRLTNGEMTNLRKVAKSLPSHFALGRNRNHQGLAAAIIK 460

Query: 1719 LWEKSLVAKIAVKRGIQNTNNKLMAEEIKTLTGGVLLLRNKYYIVIYRGKDFLPTSVAAA 1540
            LWEKSLVAKIAVKRGIQNTNNKLMAEE+K LTGGVLLLRNKYYIVIYRGKDFLPT+VAA 
Sbjct: 461  LWEKSLVAKIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYYIVIYRGKDFLPTTVAAT 520

Query: 1539 LAERQEMTKQIQDVEE---------KMRRGAAEVAPKG-EDGQALAGTLAEFYEAQARWG 1390
            LAERQ++ KQ+QD+EE         KM++ A +  P G E+GQALAGTLAEFYEAQARWG
Sbjct: 521  LAERQKLAKQVQDLEEQVRVQDIEQKMQKKAVDSVPSGEEEGQALAGTLAEFYEAQARWG 580

Query: 1389 REISAEEHEKMLEEASRAKNARVFKKIEHKLAIXXXXXXXXXXXXXKIEASMVPVDPFDD 1210
            REI++EE EKM+EEA+ AK+AR+ K+IEHK A+             KIEASMVP  P  D
Sbjct: 581  REITSEEREKMIEEAAVAKHARLVKRIEHKAAVAQAKKLRAEKLLAKIEASMVPAGPDYD 640

Query: 1209 QETITDEERFMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQK--AYV 1036
            QETIT+EER MFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLI+KQK  A+V
Sbjct: 641  QETITEEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFV 700

Query: 1035 EETARLLEYESGGILVAIERVPKGHAIIYYRGKNYRRPISLRPRNLLTKAKALKRAVALQ 856
            E+TARLLEYESGGILVAIERVPKG A+IYYRGKNYRRPISLRPRNLLTKAKALKR+VA+Q
Sbjct: 701  EDTARLLEYESGGILVAIERVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSVAMQ 760

Query: 855  RHEALSQHISELEKTIGQMXXXXXXXXXXXXENARNLDNSQHNHVTEFTQNKDE 694
            RHEALSQHISELE TI QM            E + + D + +++V+EF Q++++
Sbjct: 761  RHEALSQHISELETTIEQMQDKIVASKSGQDEGSWSTDENLNDNVSEFIQSEND 814