BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00001541
         (2067 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   713   0.0  
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              712   0.0  
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   711   0.0  
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   709   0.0  
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   708   0.0  
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   701   0.0  
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   701   0.0  
gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   701   0.0  
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   700   0.0  
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   697   0.0  
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   696   0.0  
ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF,...   693   0.0  
gb|KDO48075.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   691   0.0  
gb|KDO48074.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   691   0.0  
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   686   0.0  
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   686   0.0  
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   686   0.0  
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   686   0.0  
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   681   0.0  
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   677   0.0  

>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  713 bits (1841), Expect = 0.0
 Identities = 377/573 (65%), Positives = 449/573 (78%), Gaps = 3/573 (0%)
 Frame = -1

Query: 1920 THMAMEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTS 1741
            ++ +MEAG N+LSS+P F PR H RN   S+SSVLMLH+Q A A+ SIPTT +AR FPTS
Sbjct: 3    SYSSMEAGTNILSSTPSFPPRTHFRN---SSSSVLMLHDQVAPAVASIPTT-IARKFPTS 58

Query: 1740 VLLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFN 1561
            VLLQEQRDE RPF   +K++R  Q TL+ R+ME   S  EEN   D  QY+ +F+ QL  
Sbjct: 59   VLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSD-DHNQYMVNFERQLLL 117

Query: 1560 WPGLWYLLPSLQTGETQ---SLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLT 1390
             PGLWY LPS QTGE     S  ++S+ +  +  MDV+P +V+               L 
Sbjct: 118  QPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLY 177

Query: 1389 ENPQLFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETN 1210
            EN +L G +L++S +PS  + +  N   E EKTVRSTRLLERRSKKR    PKV +HE +
Sbjct: 178  ENAKLLGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRR--NPKVAVHENH 234

Query: 1209 NSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQ 1030
             S +A++++K+ E +DP DPLR+FLWGPETR+LLTAKEESELIVQIQ+LM LEEVK RLQ
Sbjct: 235  GSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQ 294

Query: 1029 SQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQ 850
            S   REPT+VEWA+AVGLSC+ LQSQLHSGN SR KLIYANLR+VVHIAKQYQGRGLNLQ
Sbjct: 295  SHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQ 354

Query: 849  DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRK 670
            DLLQEGSMGLM SVEKFKP AGCRFA+YAYWWIRQAVRKAIFQHSRTIRLP+N+Y LL K
Sbjct: 355  DLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGK 414

Query: 669  VTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEI 490
            V EAKRL IQEG+H P+KEEIA R G+T+EKL+RLL   +MPLS+QQPVW DQ TTFQE+
Sbjct: 415  VKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEV 474

Query: 489  TADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGL 310
            TADT IEIPDVSVAKQLMR+H+RNLL +L+PKER+IIRLRFGI DG P++LSEIG VFG 
Sbjct: 475  TADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGF 534

Query: 309  SKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            SKERVRQLE R+L+KLKQ LSS GL++Y ++LV
Sbjct: 535  SKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 567


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  712 bits (1838), Expect = 0.0
 Identities = 377/569 (66%), Positives = 446/569 (78%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAG N+LSS+P F PR H RN   S+SSVLMLH+Q A A+ SIPTT +AR FPTSVLLQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRN---SSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQ 56

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRDE RPF   +K++R  Q TL+ R+ME   S  EEN   D  QY+ +F+ QL   PGL
Sbjct: 57   EQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSD-DHNQYMVNFERQLLLQPGL 115

Query: 1548 WYLLPSLQTGETQ---SLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQ 1378
            WY LPS QTGE     S  ++S+ +  +  MDV+P +V+               L EN +
Sbjct: 116  WYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAK 175

Query: 1377 LFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
            L G +L++S +PS  + +  N   E EKTVRSTRLLERRSKKR    PKV +HE + S +
Sbjct: 176  LLGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRR--NPKVAVHENHGSRR 232

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            A++++K+ E +DP DPLR+FLWGPETR+LLTAKEESELIVQIQ+LM LEEVK RLQS   
Sbjct: 233  AEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLK 292

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPT+VEWA+AVGLSC+ LQSQLHSGN SR KLIYANLR+VVHIAKQYQGRGLNLQDLLQ
Sbjct: 293  REPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQ 352

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLM SVEKFKP AGCRFA+YAYWWIRQAVRKAIFQHSRTIRLP+N+Y LL KV EA
Sbjct: 353  EGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEA 412

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            KRL IQEG+H P+KEEIA R G+T+EKL+RLL   +MPLS+QQPVW DQ TTFQE+TADT
Sbjct: 413  KRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADT 472

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             IEIPDVSVAKQLMR+H+RNLL +L+PKER+IIRLRFGI DG P++LSEIG VFG SKER
Sbjct: 473  GIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKER 532

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLE R+L+KLKQ LSS GL++Y ++LV
Sbjct: 533  VRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  711 bits (1835), Expect = 0.0
 Identities = 369/575 (64%), Positives = 445/575 (77%), Gaps = 9/575 (1%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNC------PSSTSSVLMLHEQSASALTSIPTTSLARHFP 1747
            MEAGRNLLSS P F  R  +++        SS+SSVLM +EQSA A+ S+PT+S+ARHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1746 TSVLLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQL 1567
            TSVLLQEQRDE RP LH+ KED+ SQ T D R MET +   EE  + D  Q ++D +HQ 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1566 FNWPGLWYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXL 1393
             +WP LW L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1392 TENPQLFGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHE 1216
             ENP+L G E  D SLT S      + +  E  KTVRST+ LERRSKKR V KPKV  HE
Sbjct: 181  AENPKLNGAEFTDISLTSS------LGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 234

Query: 1215 TNNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSR 1036
            T NS KA +K+K+ E FD NDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+
Sbjct: 235  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294

Query: 1035 LQSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLN 856
            LQSQF REPTL+EWAKA+GLSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG+ 
Sbjct: 295  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 354

Query: 855  LQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLL 676
            L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL
Sbjct: 355  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414

Query: 675  RKVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQ 496
             +V EAKRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQ
Sbjct: 415  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474

Query: 495  EITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVF 316
            EITADT +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +F
Sbjct: 475  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 534

Query: 315  GLSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            GLSKERVRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 535  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  709 bits (1831), Expect = 0.0
 Identities = 368/576 (63%), Positives = 445/576 (77%), Gaps = 10/576 (1%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNC-------PSSTSSVLMLHEQSASALTSIPTTSLARHF 1750
            MEAGRNLLSS P F  R  +++         SS+S+VLM +EQSA A+ S+PT+S+ARHF
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 1749 PTSVLLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQ 1570
            PTSVLLQEQRDE RP LH+ KED+ SQ T D R MET +   EE  + D  Q ++D +HQ
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 1569 LFNWPGLWYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXX 1396
              +WP LW L P ++ GE  + SLT+QS+ +  ++ +D EP + V               
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 1395 LTENPQLFGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIH 1219
            L ENP+L G E  D SLT S      + +  E  KTVRST+ LERRSKKR V KPKV  H
Sbjct: 181  LAENPKLNGAEFTDISLTSS------LGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNH 234

Query: 1218 ETNNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKS 1039
            ET NS KA +K+K+ E FD NDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS
Sbjct: 235  ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 294

Query: 1038 RLQSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGL 859
            +LQSQF REPTL+EWAKA+GLSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG+
Sbjct: 295  KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 354

Query: 858  NLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGL 679
             L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y L
Sbjct: 355  GLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 414

Query: 678  LRKVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTF 499
            L +V EAKRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTF
Sbjct: 415  LSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 474

Query: 498  QEITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAV 319
            QEITADT +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +
Sbjct: 475  QEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNI 534

Query: 318  FGLSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            FGLSKERVRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 535  FGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  708 bits (1828), Expect = 0.0
 Identities = 370/574 (64%), Positives = 452/574 (78%), Gaps = 8/574 (1%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRN-CPSST--SSVLMLHEQSASALTSIPTTSLARHFPTSV 1738
            MEAGR+ LSSS  F    HLR+  PSS+  +SVLMLHEQ+  A+TS+P TS+ARHFPTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1737 LLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNW 1558
            LLQEQRDE +P LH++KED+ S+ TLD  ++ETG+SVHE+    D Y  +   + QL N 
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEATLDRMQIETGASVHEDLDIDDFYPLVNGSKPQLLN- 119

Query: 1557 PGLWYLLPSLQTGETQS--LTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTEN 1384
            P +  +  SLQTG   S  +T++S+ + + K MDVEP NVV               L E+
Sbjct: 120  PDILDVFSSLQTGAKPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAED 179

Query: 1383 PQLFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKK---RGVPKPKVGIHET 1213
             Q  G + DESL+      +  N++ E EKTVRSTR+LERR K+   R VPK K+  HE+
Sbjct: 180  SQSMGADFDESLSLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGHES 239

Query: 1212 NNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRL 1033
            N+   +D+ +K+ E F+PNDPLR+FLWGPETRQLLTAKEE+ELI ++QDL  LEEVKSRL
Sbjct: 240  NSFTSSDVPKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRL 299

Query: 1032 QSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNL 853
            Q+QF REPTL+EWA+AVG+SC+ L+SQL SG SSR+KLIYANLR+VVHIAKQYQGRGL L
Sbjct: 300  QTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGL 359

Query: 852  QDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLR 673
            QDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ VRKAIFQHSRTIRLP+NVY LL 
Sbjct: 360  QDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLG 419

Query: 672  KVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQE 493
            KV EAK+ CIQEGNH P+KEE+A R G+TVEKLE+LL++ +MPLS+QQPVW DQ TTFQE
Sbjct: 420  KVLEAKKSCIQEGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQE 479

Query: 492  ITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFG 313
            +TADT +EIPDVSVAKQLMR+H+R+LLSIL+ +ER+IIRLR+GIEDG+ +SLSEIG +FG
Sbjct: 480  VTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFG 539

Query: 312  LSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            LSKERVRQLESR+  KL+Q+L SQGL AY  +LV
Sbjct: 540  LSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 573


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  701 bits (1810), Expect = 0.0
 Identities = 357/569 (62%), Positives = 440/569 (77%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            ME GRNL+SS+  F PR  L+N  SS   V +LHEQ+   + S+PTTS+ RHFP SVLLQ
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKNSSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLLQ 60

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRD+ RPFL I++ED+ SQ  LD R++E    ++EE K+    +Y + F+ QL  WPGL
Sbjct: 61   EQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGL 120

Query: 1548 WYLLPSLQTGETQ--SLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            WYLLPSL  GE    S+  QS  +   K +DV P + +               L ++ +L
Sbjct: 121  WYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYEL 180

Query: 1374 FGVELDESLTPSTSSKNFVNFLTEGEKT-VRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
            FG +  ES  P    +N  N +   E+  VRS RLLER+SK+R +P+PKV + E + S K
Sbjct: 181  FGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRK 240

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            +D+ +K+ E FD NDPLR+FLWGPET+QLLT KEESEL V +Q+L+ LEEVK RLQSQFD
Sbjct: 241  SDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFD 300

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTLVEWA+AVG++C++LQS LHSGNSSR+K+IYAN RLVVH+AK YQG+GLNLQDLLQ
Sbjct: 301  REPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQ 360

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLMKS+EKFKPQAGCRFATYAYWWIRQA+RKAIFQ+SRTIRLP+NVY LL +V +A
Sbjct: 361  EGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKA 420

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            K+L IQEG+H P+ EE+A R G+TVEKLERL  S +MPLS+QQPVW DQ TTFQEITADT
Sbjct: 421  KKLFIQEGHH-PTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADT 479

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             +E PD+ VAKQLMRRH+RNL+SIL PKER+IIR+R+GIE+ EPKSL EIG++FGLSKER
Sbjct: 480  EVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKER 539

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLESR+L+KLKQ LSSQGL AYA++LV
Sbjct: 540  VRQLESRALHKLKQCLSSQGLGAYADLLV 568


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  701 bits (1809), Expect = 0.0
 Identities = 363/569 (63%), Positives = 439/569 (77%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAGRNLLSS P F  R  +++  SS++S       SA A+ S+PT+S+ARHFPTSVLLQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSAS--SSSSSSAPAVASVPTSSVARHFPTSVLLQ 58

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRDE RP LH+ KED+ SQ T D R MET +   EE  + D  Q ++D +HQ  +WP L
Sbjct: 59   EQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDL 118

Query: 1548 WYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            W L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L ENP+L
Sbjct: 119  WNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKL 178

Query: 1374 FGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
             G E  D SLT S      + +  E  KTVRST+ LERRSKKR V KPKV  HET NS K
Sbjct: 179  NGAEFTDISLTSS------LGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRK 232

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            A +K+K+ E FD NDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+LQSQF 
Sbjct: 233  ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 292

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTL+EWAKA+GLSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG+ L DLLQ
Sbjct: 293  REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQ 352

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL +V EA
Sbjct: 353  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 412

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            KRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQEITADT
Sbjct: 413  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 472

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +FGLSKER
Sbjct: 473  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 532

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 533  VRQLESRALYRLKQSLGGKASYGYADLLI 561


>gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 569

 Score =  701 bits (1808), Expect = 0.0
 Identities = 364/575 (63%), Positives = 441/575 (76%), Gaps = 9/575 (1%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNC------PSSTSSVLMLHEQSASALTSIPTTSLARHFP 1747
            MEAGRNLLSS P F  R  +++        SS+SSVLM +EQSA A+ S+PT+S+ARHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1746 TSVLLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQL 1567
            TSVLLQEQRDE RP LH+ KED+ SQ T D R +ET +   EE  + D  Q ++D +HQ 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1566 FNWPGLWYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXL 1393
             +WP LW L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1392 TENPQLFGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHE 1216
             ENP+L G E  D SLT S      + +  E  K     R LERRSKKR V KP+V  HE
Sbjct: 181  AENPKLNGAEFTDISLTSS------LGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234

Query: 1215 TNNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSR 1036
            T NS KA +K+K+ E FD NDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+
Sbjct: 235  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294

Query: 1035 LQSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLN 856
            LQSQF REPTL+EWAKA+GLSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG++
Sbjct: 295  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354

Query: 855  LQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLL 676
            L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL
Sbjct: 355  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414

Query: 675  RKVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQ 496
             KV EAKRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQ
Sbjct: 415  SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474

Query: 495  EITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVF 316
            EITADT +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +F
Sbjct: 475  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 534

Query: 315  GLSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            GLSKERVRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 535  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  700 bits (1807), Expect = 0.0
 Identities = 358/569 (62%), Positives = 442/569 (77%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            ME GRNL+SS+  F PR  L+N   S+SSV +LHEQ+   + S+PTTS+ RHFP SVLLQ
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKN---SSSSVTLLHEQANPIVVSMPTTSITRHFPASVLLQ 57

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRD+ RPFL I++ED+ SQ  LD R++E    ++EE K+    +Y + F+ QL  WPGL
Sbjct: 58   EQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGL 117

Query: 1548 WYLLPSLQTGETQ--SLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            WYLLPSL  GE    S+  QS  +   K +DV P + +               L ++ +L
Sbjct: 118  WYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYEL 177

Query: 1374 FGVELDESLTPSTSSKNFVNFLTEGEKT-VRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
            FG +  ES  P    +N  N +   E+  VRS RLLER+SK+R +P+PKV + E + S K
Sbjct: 178  FGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSRK 237

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            +D+ +K+ E FD NDPLR+FLWGPET+QLLT KEESEL V +Q+L+ LEEVK RLQSQFD
Sbjct: 238  SDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFD 297

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTLVEWA+AVG++C++LQS LHSGNSSR+K+IYAN RLVVH+AK YQG+GLNLQDLLQ
Sbjct: 298  REPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQ 357

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLMKS+EKFKPQAGCRFATYAYWWIRQA+RKAIFQ+SRTIRLP+NVY LL +V +A
Sbjct: 358  EGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKA 417

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            K+L IQEG+H P+ EE+A R G+TVEKLERL  S +MPLS+QQPVW DQ TTFQEITADT
Sbjct: 418  KKLFIQEGHH-PTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADT 476

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             +E PD+ VAKQLMRRH+RNL+SIL PKER+IIR+R+GIE+ EPKSL EIG++FGLSKER
Sbjct: 477  EVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKER 536

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLESR+L+KLKQ LSSQGL AYA++LV
Sbjct: 537  VRQLESRALHKLKQCLSSQGLGAYADLLV 565


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  697 bits (1800), Expect = 0.0
 Identities = 368/574 (64%), Positives = 448/574 (78%), Gaps = 8/574 (1%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRN-CPSST--SSVLMLHEQSASALTSIPTTSLARHFPTSV 1738
            MEAGR+ LSSS  F    HLR+  PSS+  +SVLMLHEQ+  A+TS+P TS+ARHFPTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1737 LLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNW 1558
            LLQEQRDE +P LH++KED+ S+  LD  ++ETG+SVHE+    D Y  +   + QL N 
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNH 120

Query: 1557 PGLWYLLPSLQTGETQS--LTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTEN 1384
              L  +  SLQTG   S  LT++S+ + + K MDVEP NVV               L E+
Sbjct: 121  DIL-DVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAED 179

Query: 1383 PQLFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKK---RGVPKPKVGIHET 1213
             Q  G + D+         +  N++ E EKTVRSTR+LERR K+   R VPK KV  HE+
Sbjct: 180  SQSMGADFDD-----LGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHES 234

Query: 1212 NNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRL 1033
            N+   +D+++K+ E F+PNDPLR+FLWGPETRQLLTAKEE+ELI ++QDL  LEEVKSRL
Sbjct: 235  NSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRL 294

Query: 1032 QSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNL 853
            Q+QF REPTL+EWA+AVG+SC+ L+SQL SG SSR+KLIYANLR+VVHIAKQYQGRGL L
Sbjct: 295  QTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGL 354

Query: 852  QDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLR 673
            QDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ VRKAIFQHSRTIRLP+NVY LL 
Sbjct: 355  QDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLG 414

Query: 672  KVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQE 493
            KV EAK+ CIQEGNH P+KEE+A R G+TVEKLE+LL++ +MPLS+QQPVW DQ TTFQE
Sbjct: 415  KVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQE 474

Query: 492  ITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFG 313
            +TADT +EIPDVSVAKQLMR+H+R+LLSIL+ +ER+IIRLR+GIEDG+ +SLSEIG +FG
Sbjct: 475  VTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFG 534

Query: 312  LSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            LSKERVRQLESR+  KL+Q+L SQGL AY  +LV
Sbjct: 535  LSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  696 bits (1797), Expect = 0.0
 Identities = 365/575 (63%), Positives = 439/575 (76%), Gaps = 9/575 (1%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNC------PSSTSSVLMLHEQSASALTSIPTTSLARHFP 1747
            MEAGRNLLSS P F  R  +++        SS+SSVLM +EQSA A+ S+PT+S+ARHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1746 TSVLLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQL 1567
            TSVLLQEQRDE RP LH+ KED+ SQ T D R MET +   EE  + D  Q ++D +HQ 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1566 FNWPGLWYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXL 1393
             +WP LW L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1392 TENPQLFGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHE 1216
             ENP+L G E  D SLT S      + +  E  KTVRSTR LERRSKKR V KPKV  HE
Sbjct: 181  AENPKLNGAEFTDISLTSS------LGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 234

Query: 1215 TNNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSR 1036
            T NS KA +K+K+ E FDPNDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+
Sbjct: 235  TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294

Query: 1035 LQSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLN 856
            LQSQF REPTL+       LSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG+ 
Sbjct: 295  LQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 354

Query: 855  LQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLL 676
            L DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL
Sbjct: 355  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414

Query: 675  RKVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQ 496
             +V EAKRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQ
Sbjct: 415  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474

Query: 495  EITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVF 316
            EITADT +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +F
Sbjct: 475  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 534

Query: 315  GLSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            GLSKERVRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 535  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 561

 Score =  693 bits (1789), Expect = 0.0
 Identities = 371/571 (64%), Positives = 449/571 (78%), Gaps = 5/571 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAGR+L+SS P F PR HLRNC  S+SSVL+LH+Q   ALTS+ TT LARH PTSVL Q
Sbjct: 1    MEAGRSLVSSPPQFPPRTHLRNC--SSSSVLLLHDQVTPALTSLSTT-LARHSPTSVLTQ 57

Query: 1728 EQRDESRPFLHIMKEDRISQV--TLDGRR--METGSSVHEENKTIDSYQYLKDFQHQLFN 1561
            +Q +ESR  L   KED + Q+  TL  R+  M   SS ++ N  +D  QY+ +FQ QL  
Sbjct: 58   DQHNESRSML-CSKEDSVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLR 116

Query: 1560 WPGLWYLLPSLQTGETQ-SLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTEN 1384
             P LWYL PSLQT E   S+T++S+ +K +K +DVE   VV               + ++
Sbjct: 117  RPELWYLWPSLQTKEQLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKD 176

Query: 1383 PQLFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNS 1204
             +LFG  LD+S    +S ++        ++TVRSTRL+ER+ K+R VPKPK+ + ETN+ 
Sbjct: 177  AELFGARLDDS----SSIRSLTG--VPAQRTVRSTRLVERQMKRRRVPKPKIEVQETNHR 230

Query: 1203 GKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQ 1024
             K + ++K  E FDPNDPLR+FL GPETRQLLT+KEESELIV+IQ+LM L+E+KSRL+ Q
Sbjct: 231  RKPESQRKSDEGFDPNDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQ 290

Query: 1023 FDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDL 844
            F REPTLVEWA A G+SC+ALQSQ+H G+SSR KLI AN R+VVHIAKQYQGRGL+LQDL
Sbjct: 291  FSREPTLVEWAAAAGISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDL 350

Query: 843  LQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVT 664
            LQEGSMGLM+SVEKFKPQAGCRFATYAYWWIRQ++RKA+FQHSRTIRLP+NVY LL +V 
Sbjct: 351  LQEGSMGLMRSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVY 410

Query: 663  EAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITA 484
            EAK+LCIQ+GNH P+KE+IAA AG++VE LERLL++A+MPLSLQ+PVWTDQ TTFQEITA
Sbjct: 411  EAKKLCIQQGNHLPTKEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITA 470

Query: 483  DTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSK 304
            DT IE+PDV VAKQLMR+HIRNLLS+LSP+ERKIIRLRFGIE GE KSLSEIGA FGLSK
Sbjct: 471  DTTIEVPDVGVAKQLMRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSK 530

Query: 303  ERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            ERVRQLESR+LYKLKQ L S GL AYANM++
Sbjct: 531  ERVRQLESRALYKLKQCLGSHGLAAYANMII 561


>gb|KDO48075.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 558

 Score =  691 bits (1782), Expect = 0.0
 Identities = 357/569 (62%), Positives = 436/569 (76%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAGRNLLSS P F  R  +++  SS++S       S+S++ S+PT+S+ARHFPTSVLLQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSAS-----SSSSSSVASVPTSSVARHFPTSVLLQ 55

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRDE RP LH+ KED+ SQ T D R +ET +   EE  + D  Q ++D +HQ  +WP L
Sbjct: 56   EQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDL 115

Query: 1548 WYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            W L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L ENP+L
Sbjct: 116  WNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKL 175

Query: 1374 FGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
             G E  D SLT S      + +  E  K     R LERRSKKR V KP+V  HET NS K
Sbjct: 176  NGAEFTDISLTSS------LGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 229

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            A +K+K+ E FD NDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+LQSQF 
Sbjct: 230  ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 289

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTL+EWAKA+GLSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG++L DLLQ
Sbjct: 290  REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 349

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL KV EA
Sbjct: 350  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 409

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            KRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQEITADT
Sbjct: 410  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 469

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +FGLSKER
Sbjct: 470  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 529

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 530  VRQLESRALYRLKQSLGGKASYGYADLLI 558


>gb|KDO48074.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 561

 Score =  691 bits (1782), Expect = 0.0
 Identities = 358/569 (62%), Positives = 435/569 (76%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAGRNLLSS P F  R  +++  SS++S       SA A+ S+PT+S+ARHFPTSVLLQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSAS--SSSSSSAPAVASVPTSSVARHFPTSVLLQ 58

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRDE RP LH+ KED+ SQ T D R +ET +   EE  + D  Q ++D +HQ  +WP L
Sbjct: 59   EQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDL 118

Query: 1548 WYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            W L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L ENP+L
Sbjct: 119  WNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKL 178

Query: 1374 FGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
             G E  D SLT S      + +  E  K     R LERRSKKR V KP+V  HET NS K
Sbjct: 179  NGAEFTDISLTSS------LGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 232

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            A +K+K+ E FD NDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+LQSQF 
Sbjct: 233  ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 292

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTL+EWAKA+GLSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG++L DLLQ
Sbjct: 293  REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 352

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL KV EA
Sbjct: 353  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 412

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            KRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQEITADT
Sbjct: 413  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 472

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +FGLSKER
Sbjct: 473  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 532

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 533  VRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  686 bits (1771), Expect = 0.0
 Identities = 362/578 (62%), Positives = 441/578 (76%), Gaps = 12/578 (2%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRN-------CPSSTSSVLMLHEQSASALTSIPTTSLARHF 1750
            ME GR+ LSSS  F    HLR+         SS++SVLMLHEQ+ +A+ S+P T +ARHF
Sbjct: 1    MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSSTSVLMLHEQATAAVPSVPITFVARHF 60

Query: 1749 PTSVLLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQ 1570
            PTSVLLQEQRDE +P LH +KE++ SQ TLD  ++ET +S++E+      YQ +KD +HQ
Sbjct: 61   PTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIETKASLNEDLDIDGFYQLVKDSEHQ 120

Query: 1569 LFNWPGLWYLLPSLQTGETQS--LTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXX 1396
            L N  GL  +  SLQTG   S  LTV+ + + + K MD++P + V               
Sbjct: 121  LLNRSGLLDVFSSLQTGVKLSAPLTVEPITTASSKHMDIKPSDAVALAKKALSASKEAVS 180

Query: 1395 LTENPQLFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSK---KRGVPKPKVG 1225
              +  +  G + D+SL     S    N+L E EKTVRSTRLLERR K   K+ V K KV 
Sbjct: 181  FADGSKSMGYDFDDSL-----SIGLDNWLVEDEKTVRSTRLLERRRKRLKKKRVSKSKVL 235

Query: 1224 IHETNNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEV 1045
            IHETN+   +D+++K+ E F+ NDPLR+FLWGPET+QLLTA+EE+ELI ++QDL  LEEV
Sbjct: 236  IHETNSPPSSDVRRKINEGFNQNDPLRLFLWGPETKQLLTAEEEAELIARVQDLFKLEEV 295

Query: 1044 KSRLQSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGR 865
            K+RLQSQF REPTLVEWA+AVG+SC+ L+SQL SG SSR+KLIYANLR+VVHIAKQYQGR
Sbjct: 296  KNRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGR 355

Query: 864  GLNLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVY 685
            GL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ VRKAIFQHSRTIRLP+NVY
Sbjct: 356  GLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVY 415

Query: 684  GLLRKVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKT 505
             LL KV EAK+ CIQEGNH P+KEE+A R G+TVEKL++LL+S +MPLS+QQPVW DQ +
Sbjct: 416  TLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDS 475

Query: 504  TFQEITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIG 325
            TFQEITADT  EIP VSV KQLMR+H+R+LL IL+ +ER+IIRLRFGIEDG+ +SLSEIG
Sbjct: 476  TFQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQRSLSEIG 535

Query: 324  AVFGLSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
             +FGLSKERVRQLESR+  KLKQ+L SQGL AY  +LV
Sbjct: 536  NMFGLSKERVRQLESRAFLKLKQSLGSQGLGAYGPLLV 573


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  686 bits (1771), Expect = 0.0
 Identities = 364/577 (63%), Positives = 437/577 (75%), Gaps = 11/577 (1%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRN------CPSSTSSVLMLHEQSASALTSIPTTSLARHFP 1747
            ME GR+ LSSS  F    HLR+        SS++SVLMLHEQ+  A+TS+P T +ARHFP
Sbjct: 1    MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSTSVLMLHEQATPAVTSVPITFVARHFP 60

Query: 1746 TSVLLQEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQL 1567
            TSVLLQEQRDE +P LH +KE++ SQ TLD  ++E  +S++E+ K    YQ +KD +HQL
Sbjct: 61   TSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIEARASLNEDLKIDGFYQLVKDSEHQL 120

Query: 1566 FNWPGLWYLLPSLQTGETQS--LTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXL 1393
             N  GL  +  SLQT    S  LT++ + + + K MD++P + V                
Sbjct: 121  LNRSGLLDVFSSLQTRVKSSALLTMEPITTASSKHMDIKPSDAVALAKKALSASKEAVSF 180

Query: 1392 TENPQLFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRS---KKRGVPKPKVGI 1222
             E+ +  G  L       T S+   N+L E EKTVRS RLLERR    KK+ V K KV I
Sbjct: 181  AEDSKSMGDXL------MTVSEGLDNWLVEDEKTVRSARLLERRRRRLKKKRVSKSKVLI 234

Query: 1221 HETNNSGKADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVK 1042
            HETN    +D+++K+ E  +PNDPLR+FLWGPET+QLLTAKEE+ELI Q+QDL  LEEVK
Sbjct: 235  HETNGPTSSDVRKKINEGLNPNDPLRLFLWGPETKQLLTAKEEAELIAQVQDLFKLEEVK 294

Query: 1041 SRLQSQFDREPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRG 862
            SRLQSQF REPTLVEWA+AVG+SC+ L+SQL SG SSR+KLIYANLR+VVHIAKQYQGRG
Sbjct: 295  SRLQSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRG 354

Query: 861  LNLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYG 682
            L LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ VRKAIFQHSRTIRLP+NVY 
Sbjct: 355  LGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYT 414

Query: 681  LLRKVTEAKRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTT 502
            LL KV EAK+ CIQEGNH P+KEE+A R G+TVEKL++LL+S +MPLS+QQPVW DQ TT
Sbjct: 415  LLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDTT 474

Query: 501  FQEITADTAIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGA 322
            FQEITADT  EIP VSV KQLMR+H+R+LL IL+ +ER+IIRLRFGIEDG+ +SLSEIG 
Sbjct: 475  FQEITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQRSLSEIGN 534

Query: 321  VFGLSKERVRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            +FGLSKERVRQLESR+  KLKQ+L SQGL AY  +LV
Sbjct: 535  MFGLSKERVRQLESRAFLKLKQSLGSQGLGAYGPLLV 571


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  686 bits (1771), Expect = 0.0
 Identities = 359/569 (63%), Positives = 433/569 (76%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAGRNLLSS P F  R  +++  SS++S       SA A+ S+PT+S+ARHFPTSVLLQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSAS--SSSSSSAPAVASVPTSSVARHFPTSVLLQ 58

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRDE RP LH+ KED+ SQ T D R MET +   EE  + D  Q ++D +HQ  +WP L
Sbjct: 59   EQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDL 118

Query: 1548 WYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            W L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L ENP+L
Sbjct: 119  WNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKL 178

Query: 1374 FGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
             G E  D SLT S      + +  E  KTVRSTR LERRSKKR V KPKV  HET NS K
Sbjct: 179  NGAEFTDISLTSS------LGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRK 232

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            A +K+K+ E FDPNDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+LQSQF 
Sbjct: 233  ASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 292

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTL+       LSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG+ L DLLQ
Sbjct: 293  REPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQ 352

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL +V EA
Sbjct: 353  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 412

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            KRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQEITADT
Sbjct: 413  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 472

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +FGLSKER
Sbjct: 473  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 532

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 533  VRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  686 bits (1771), Expect = 0.0
 Identities = 358/569 (62%), Positives = 434/569 (76%), Gaps = 3/569 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAGRNLLSS P F  R  +++  SS++S       S+S++ S+PT+S+ARHFPTSVLLQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSAS-----SSSSSSVASVPTSSVARHFPTSVLLQ 55

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRDE RP LH+ KED+ SQ T D R MET +   EE  + D  Q ++D +HQ  +WP L
Sbjct: 56   EQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDL 115

Query: 1548 WYLLPSLQTGE--TQSLTVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            W L P ++ GE  + SLT+QS+ +  ++ +D EP + V               L ENP+L
Sbjct: 116  WNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKL 175

Query: 1374 FGVEL-DESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
             G E  D SLT S      + +  E  KTVRSTR LERRSKKR V KPKV  HET NS K
Sbjct: 176  NGAEFTDISLTSS------LGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRK 229

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
            A +K+K+ E FDPNDPLR+FLWGPETR+LLTA EE ELI QIQDL+ LE+ KS+LQSQF 
Sbjct: 230  ASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 289

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTL+       LSCR L+S+LHSGNSSR+KLI ANLRLVVH+AKQYQGRG+ L DLLQ
Sbjct: 290  REPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQ 349

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ +RKAIFQHSRTIRLP+N+Y LL +V EA
Sbjct: 350  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 409

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            KRL IQEGNH P KE++A R G+TVEKLERL+F  +MPLS+QQPVW DQ TTFQEITADT
Sbjct: 410  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 469

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
             +EIPD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIEDG+PKSLSE+G +FGLSKER
Sbjct: 470  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 529

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANMLV 211
            VRQLESR+LY+LKQ+L  +    YA++L+
Sbjct: 530  VRQLESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  681 bits (1758), Expect = 0.0
 Identities = 366/567 (64%), Positives = 432/567 (76%), Gaps = 2/567 (0%)
 Frame = -1

Query: 1908 MEAGRNLLSSSPPFHPRIHLRNCPSSTSSVLMLHEQSASALTSIPTTSLARHFPTSVLLQ 1729
            MEAGR LLSSSP F  R HL+N  S  SSVL+L EQ+  A+T+IPTTS A+HFPTSVLLQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKN--SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQ 58

Query: 1728 EQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPGL 1549
            EQRDE RP  +I KEDR SQ TLD R+ E G+S HE   + +  Q +++F++QL +WP  
Sbjct: 59   EQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPTY 118

Query: 1548 WYLLPSLQTGETQSL--TVQSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQL 1375
            W LLP  Q G+  S+  T QSV     KL+DVEP +V+               L +N   
Sbjct: 119  WNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLADN--- 175

Query: 1374 FGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGKA 1195
               +LD   + S+SS     F  E  + VRS R L R+S  R VPK K  I ET +S  A
Sbjct: 176  -STDLDNLASTSSSS-----FSLEEVRIVRSRRHLARQSLNRRVPKTKDMIFETYDSKSA 229

Query: 1194 DLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFDR 1015
            D+++++ + FDPNDPLR+FLWGPET+QLLTAKEE ELI QIQDLM LE VK+RL+SQF R
Sbjct: 230  DVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGR 289

Query: 1014 EPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQE 835
            EPTLVEWA+AVGLSC  L+ QLHSGN SR+KLI ANLR+VVHIAK+YQ RGL LQDLLQE
Sbjct: 290  EPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQE 349

Query: 834  GSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEAK 655
            G++GLMKS+EKFKPQAGCRFATYAYWWIRQ + KAIFQHSRTIRLP+NVYGLL KV EAK
Sbjct: 350  GTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAK 409

Query: 654  RLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADTA 475
            R  IQEGNH+P+ EEIA R G+ ++KLE+LL   + PLS+QQ VW+DQ TTFQEITADT 
Sbjct: 410  RSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTE 469

Query: 474  IEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKERV 295
            IEIPDVSVAKQLMR+HIR LL+ILS KER+IIRLRFGIEDG+ KSLSEIG VFGLSKERV
Sbjct: 470  IEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERV 529

Query: 294  RQLESRSLYKLKQNLSSQGLDAYANML 214
            RQLESR+LYKLKQ + S GLDAYA++L
Sbjct: 530  RQLESRALYKLKQCVGSHGLDAYADLL 556


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
          Length = 572

 Score =  677 bits (1747), Expect = 0.0
 Identities = 361/568 (63%), Positives = 433/568 (76%), Gaps = 5/568 (0%)
 Frame = -1

Query: 1902 AGRNLLSSSPP-FHPRIHL-RNCPSS-TSSVLMLHEQSASALTSIPTTSLARHFPTSVLL 1732
            AGRNLLSS P  F  +  L R+ PSS +SSVLML+E  A ALTS+P   L RH P SV+ 
Sbjct: 4    AGRNLLSSPPTTFSHKTQLSRSSPSSISSSVLMLYEHVAPALTSVPHAYLVRHVPASVIN 63

Query: 1731 QEQRDESRPFLHIMKEDRISQVTLDGRRMETGSSVHEENKTIDSYQYLKDFQHQLFNWPG 1552
             EQ+ E+R  LH +KE++ S  T+D R +E  SS  EEN  +DS Q +   Q QL   PG
Sbjct: 64   PEQQFENRLQLHSVKEEKTSLATIDRRLVEAASSAMEENDAVDSEQNINALQVQLLRSPG 123

Query: 1551 LWYLLPSLQTGETQSLTV--QSVLSKAKKLMDVEPHNVVXXXXXXXXXXXXXXXLTENPQ 1378
            L YL  S    E   LT+  +S+  K +KLM+ EPHNVV               L E+ +
Sbjct: 124  LSYLFSSYHLKEKVPLTLDTESLSDKGEKLMNFEPHNVVALARKALLASREAALLAEDSK 183

Query: 1377 LFGVELDESLTPSTSSKNFVNFLTEGEKTVRSTRLLERRSKKRGVPKPKVGIHETNNSGK 1198
            L G   D+S+ P+  S N  +   + ++  RSTRLLERRSKKRG P  K  + ETN S +
Sbjct: 184  LLGTNFDDSIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSER 243

Query: 1197 ADLKQKMREAFDPNDPLRMFLWGPETRQLLTAKEESELIVQIQDLMALEEVKSRLQSQFD 1018
             D+++++ E+ D NDPLRMFLWGPETRQLLT KEESELIV+IQ+ M L+EVK RLQ+QFD
Sbjct: 244  PDVRRRVNESIDLNDPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFD 303

Query: 1017 REPTLVEWAKAVGLSCRALQSQLHSGNSSRDKLIYANLRLVVHIAKQYQGRGLNLQDLLQ 838
            REPTL+EWA+A GL+ R LQSQL SG SSRDKLI ANLR+VVHIAKQYQGRGL+LQDLLQ
Sbjct: 304  REPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQ 363

Query: 837  EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQAVRKAIFQHSRTIRLPDNVYGLLRKVTEA 658
            EGS+GLMKSVEKFKPQAGCRF TYAYWWIRQ VRKAIFQHSRTIRLP+NVY LL KV +A
Sbjct: 364  EGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDA 423

Query: 657  KRLCIQEGNHRPSKEEIAARAGLTVEKLERLLFSAKMPLSLQQPVWTDQKTTFQEITADT 478
            K+LCIQ+GNH P++E+IA+ AG++VE+L+ LL +A+ PLS+QQ VWTDQ  TFQEITAD 
Sbjct: 424  KKLCIQQGNHHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADN 483

Query: 477  AIEIPDVSVAKQLMRRHIRNLLSILSPKERKIIRLRFGIEDGEPKSLSEIGAVFGLSKER 298
            AIE P++SV+KQLMRRH+RNLL++LSPKERKIIRLRFGI DGE KSLSEIGAVFGLSKER
Sbjct: 484  AIEAPELSVSKQLMRRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKER 543

Query: 297  VRQLESRSLYKLKQNLSSQGLDAYANML 214
            VRQLESR+LY+LKQNLSS GLDAY ++L
Sbjct: 544  VRQLESRALYRLKQNLSSHGLDAYNDLL 571