BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cornus23_contig00000075
         (3670 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1411   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1405   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1398   0.0  
ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1396   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1391   0.0  
ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic...  1388   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1387   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1386   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1385   0.0  
ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1380   0.0  
ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1380   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythra...  1378   0.0  
ref|XP_012071554.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1375   0.0  
ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1374   0.0  
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1372   0.0  
ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1372   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1367   0.0  
ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1365   0.0  
gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium r...  1360   0.0  
ref|XP_004144791.2| PREDICTED: DNA-directed RNA polymerase 3, ch...  1359   0.0  

>ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 952

 Score = 1411 bits (3652), Expect = 0.0
 Identities = 709/951 (74%), Positives = 789/951 (82%), Gaps = 5/951 (0%)
 Frame = -3

Query: 3446 TPNIQKTLRKFPLSSSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIP 3267
            TP I    +    SSS FP  LKLPSI+    +   P+SD TD++F    E+L+ LQ +P
Sbjct: 3    TPEIPSFSQSPQFSSSPFPQTLKLPSIHNPAPLLPPPISDCTDDSFPGKPEKLSTLQVMP 62

Query: 3266 NGFHQIAPRESIRRVFIQDPPWITSFFMKSLYKRTKQG--LKLEFKEIERRKYNLLRRRQ 3093
            NGF     +ES  R FIQDPPWI+S +MKSL  R+K    +K+EF+E ERRKY LLRRRQ
Sbjct: 63   NGFQSNLTKESSGRGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRRRQ 122

Query: 3092 IRAETEAWDKMVXXXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXX 2913
            I+AETEAW+ MV           EKKLAPNLPYVKKL LGWFEPL E             
Sbjct: 123  IKAETEAWENMVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRSKK 182

Query: 2912 XXXXXAPHIELLPADKMAVIVMHKMMGLLMMG-QENRCXXXXXXXXXXXXXXXQEIRIHS 2736
                 AP I+ LPADKMAVIVMHK+M LLMMG +E+RC                E+RIH+
Sbjct: 183  QKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHN 242

Query: 2735 FLEKSKKCQRKKIVAQ--DGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDK 2562
            FLEK+KK QRK+ VA+  +   KE  ILRKRV+SLI+R R++EVQKLV+NEE K W RD 
Sbjct: 243  FLEKTKKYQRKETVAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSRDT 302

Query: 2561 QAKLGCRLIELLTETAYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIEC 2382
            QAKLGC LIELLT++AYV  PVNQSAD PPD+RPAFRH FKI P++  Q VVK+YGVIEC
Sbjct: 303  QAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVIEC 362

Query: 2381 DPLVFTGLDRTARHMIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSV 2202
            DPLV TGLD+T +HMIIPY+PMLVPPKKWKGYD+GGYLFLPSYLMRTHGS+ QQ AVK+V
Sbjct: 363  DPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAVKTV 422

Query: 2201 PVKQMQKVYEALDTLGNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDL 2022
            P KQMQKVYEALDTLGNTKWRVN+R+LSVVE IWA GGNIAGLV+R+DVPIPE   SDD 
Sbjct: 423  PPKQMQKVYEALDTLGNTKWRVNKRILSVVECIWAAGGNIAGLVNREDVPIPEL-LSDDA 481

Query: 2021 LEIXXXXXXXXXXXKINQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHP 1842
             E+           KINQE HSQRCDTELKL+VARKMKDEE FYYPHNLDFRGRAYPMHP
Sbjct: 482  KEVKKWKWSVRKVKKINQERHSQRCDTELKLNVARKMKDEEGFYYPHNLDFRGRAYPMHP 541

Query: 1841 HLNHLSSDLCRGVLEFSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAE 1662
            HLNHLSSDLCRG+LEF+EGRPLGKSGLRWLKIHLANLY GGVEKLSYD RLSFVEN++AE
Sbjct: 542  HLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRLSFVENNIAE 601

Query: 1661 VLDSAHHPLNGNRWWLMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQH 1482
            + DSA + LNGNRWWL AEDPFQCLAACINL+EALKSS PHTVISHLPIHQDGSCNGLQH
Sbjct: 602  IFDSADNSLNGNRWWLKAEDPFQCLAACINLAEALKSSSPHTVISHLPIHQDGSCNGLQH 661

Query: 1481 YAALGRDGFEAAAVNLVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQ 1302
            YAALGRD FEAAAVNL+AGDKPADVYSEIA RVHNIM++DS KDPAT+P ALLAKLL+ Q
Sbjct: 662  YAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLISQ 721

Query: 1301 VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEI 1122
            VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDRLLF+A+CYAAKVTLAALGE+
Sbjct: 722  VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGEL 781

Query: 1121 FQAARAIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREG 942
            FQAARAIMGWLGDCAK+IASENQPV WTTPLGLPVVQPYFKT+RHVI+TSLQVLALQREG
Sbjct: 782  FQAARAIMGWLGDCAKIIASENQPVCWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREG 841

Query: 941  NSVVVKKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRIL 762
            +SV V+KQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDV+ MN+IL
Sbjct: 842  DSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDRMNQIL 901

Query: 761  REKFVELYSMPILENLLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            REKFV+LYSMPILENLLESFQ SYP LTFP LP+RGDFDL++VI+SPYFFN
Sbjct: 902  REKFVDLYSMPILENLLESFQTSYPMLTFPPLPNRGDFDLEKVIESPYFFN 952


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1405 bits (3638), Expect = 0.0
 Identities = 706/985 (71%), Positives = 808/985 (82%), Gaps = 9/985 (0%)
 Frame = -3

Query: 3536 PGAHLPTSWRTKNAKPNQNFRKNPNT---LFLLTPNIQKTLRKFPLSSSSFPYNLKLPSI 3366
            P   L +S     + P+  +RK   +    FL   + Q+ L+     +SSFP  LKLP I
Sbjct: 34   PPLKLASSASYSPSPPSSQWRKTQKSQKNCFLYGIHSQEFLKLS--QTSSFPKTLKLPVI 91

Query: 3365 NTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIRRVFIQDPPWITSFF 3186
                ++H   +  STDEN  ENLEEL NLQ IPNG+  +  +ES +RVFIQDPPW++S F
Sbjct: 92   QLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLF 151

Query: 3185 MKSLYKRTKQ--GLKLEFKEIERRK-YNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKK 3015
            M SL+ R KQ  G++ EF+EIERR+ Y +LRRRQI+AETEAW++MV           EKK
Sbjct: 152  MNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKK 211

Query: 3014 LAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMM 2835
            LAPNLPYVKKL LGWFEPL +                  APHI+ LPADKMAVIVMHK+M
Sbjct: 212  LAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLM 271

Query: 2834 GLLMMG-QENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIVAQ--DGLGKETE 2664
            GLLMMG +E RC                E+RIH+F+EK+KK Q+    AQ  + + +ET 
Sbjct: 272  GLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMSGAQGQEDMSRETM 331

Query: 2663 ILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSA 2484
            ILRKRV+SLIKR R+VEV+KL+++EE + WGRD QAKLGCRL+ELLTETAYV  PV+QSA
Sbjct: 332  ILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSA 391

Query: 2483 DCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPP 2304
            D PPDIRPAFRH+F+I  +DP + +VK+YGVIECDPLV  G+DRT + M+IPY+PMLVPP
Sbjct: 392  DTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPP 451

Query: 2303 KKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRV 2124
            KKW+GYD+GGYLFLPSYLMRTHGS+ QQ AV+SVP KQMQ+VYEALDTLG+TKWRVN+R+
Sbjct: 452  KKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRI 511

Query: 2123 LSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCD 1944
            LSVVESIWAGGGNIAGLVDRKDVPIPE   SDD++E+           KINQE+HSQRCD
Sbjct: 512  LSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMELKRWKWRVRKAKKINQELHSQRCD 570

Query: 1943 TELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSG 1764
            TELKLSVARK+KDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEF+EGRPLGKSG
Sbjct: 571  TELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSG 630

Query: 1763 LRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLA 1584
            LRWLK+HLA+LYAGG+EKL YD R++FVENH+ ++LDSAH+PLNGNRWWL AEDP QCLA
Sbjct: 631  LRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLA 690

Query: 1583 ACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVY 1404
            ACINLSEALKS  PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAAVNLVAG+KPADVY
Sbjct: 691  ACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVY 750

Query: 1403 SEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQI 1224
            +EIA RV +I+  DS KDPAT+P+ALLAKLL+ QVDRKLVKQTVMTSVYGVTYVGAREQI
Sbjct: 751  TEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQI 810

Query: 1223 KRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVR 1044
            KRRLEEKG I DDRLLF ASCYAAKVTLAALGE+FQAAR  M WLGDCAKVIASENQPVR
Sbjct: 811  KRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVR 870

Query: 1043 WTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMM 864
            WTTPLGLPVVQPYFKT+RHVI+TSLQVLALQREG++V V+KQRTAFPPNFVHSLDGSHMM
Sbjct: 871  WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSHMM 930

Query: 863  MTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPA 684
            MTA+ACRDAGL FAGVHDSFWTHACDV++MNRILREKFVELYSMPILE+LLESFQ+SYPA
Sbjct: 931  MTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESYPA 990

Query: 683  LTFPSLPDRGDFDLQEVIDSPYFFN 609
            LTFP LP RGDFDLQEV++SPYFFN
Sbjct: 991  LTFPPLPKRGDFDLQEVLESPYFFN 1015


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum
            lycopersicum]
          Length = 1007

 Score = 1398 bits (3619), Expect = 0.0
 Identities = 691/938 (73%), Positives = 790/938 (84%), Gaps = 6/938 (0%)
 Frame = -3

Query: 3404 SSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIRR 3225
            +SSFP  LKLP I    ++H   +  STDEN  ENLEEL NLQ IPNG+  +  +ES +R
Sbjct: 71   TSSFPKTLKLPIIQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKR 130

Query: 3224 VFIQDPPWITSFFMKSLYKRTKQ--GLKLEFKEIERRK-YNLLRRRQIRAETEAWDKMVX 3054
            VFIQDPPW++S FM +L+ R KQ  G++ EF+EIERR+ Y +LRRRQI+AETEAW++MV 
Sbjct: 131  VFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVE 190

Query: 3053 XXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLP 2874
                      EKKLAPNLPYVKKL LGWFEPL +                  APHI+ LP
Sbjct: 191  EYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSLP 250

Query: 2873 ADKMAVIVMHKMMGLLMMG-QENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKI 2697
            ADKMAVIVMHK+MGLLMMG +E RC                E+RIH+F+EK+KK Q+   
Sbjct: 251  ADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMT 310

Query: 2696 VAQ--DGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLT 2523
             AQ  + + +ET ILRKRV+SLIKR R+VEV+KL+++EE + WGRD QAKLGCRL+ELLT
Sbjct: 311  GAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLT 370

Query: 2522 ETAYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTAR 2343
            ETAYV  PV+QSAD PPDIRPAFRH+F+I  +DP + +VK+YGVIECDPLV  G+DRT +
Sbjct: 371  ETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVK 430

Query: 2342 HMIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALD 2163
             M+IPY+PMLVPPKKW+GYD+GGYLFLPSYLMRTHGS+ QQ AV+SVP KQMQ+VYEALD
Sbjct: 431  QMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALD 490

Query: 2162 TLGNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXX 1983
            TLG+TKWRVN+R+LSVVE+IWAGGGNIAGLVDRKDVPIPE   SDD++E+          
Sbjct: 491  TLGSTKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPEL-HSDDIMELKRWKWRVRKA 549

Query: 1982 XKINQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 1803
             KINQE+HSQRCDTELKLSVARK++DEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+
Sbjct: 550  KKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 609

Query: 1802 LEFSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNR 1623
            LEF+EGRPLGKSGLRWLK+HLA+LYAGG+EKL YD R++FVENH+ ++LDSAH+PLNGNR
Sbjct: 610  LEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNR 669

Query: 1622 WWLMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAA 1443
            WWL AEDP QCLAACINLSEA+KS  PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAA
Sbjct: 670  WWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAA 729

Query: 1442 VNLVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTS 1263
            VNLVAG+KPADVY+EIA RV +I+  DS KDPAT+P+ALLAKLL+ QVDRKLVKQTVMTS
Sbjct: 730  VNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTS 789

Query: 1262 VYGVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGD 1083
            VYGVTYVGAREQIKRRLEEKG I DDRLLF ASCYAAKVTLAALGE+FQAAR  M WLGD
Sbjct: 790  VYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGD 849

Query: 1082 CAKVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFP 903
            CAKVIASENQPVRWTTPLGLPVVQPYFKT+RHVI+TSLQVLALQREG++V V+KQRTAFP
Sbjct: 850  CAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFP 909

Query: 902  PNFVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPIL 723
            PNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV++MNRILREKFVELYSMPIL
Sbjct: 910  PNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPIL 969

Query: 722  ENLLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            E+LLESFQ+SYPALTFP LP RGDFDL+EV++SPYFFN
Sbjct: 970  EDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 1007


>ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic [Erythranthe
            guttatus]
          Length = 953

 Score = 1396 bits (3613), Expect = 0.0
 Identities = 693/938 (73%), Positives = 787/938 (83%), Gaps = 5/938 (0%)
 Frame = -3

Query: 3407 SSSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIR 3228
            SSSSFP NLKLPS++    +   P+SDS+D+NF  NL+++A LQ IPNGF     +ES  
Sbjct: 16   SSSSFPQNLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQVIPNGFPSNFTKESKD 75

Query: 3227 RVFIQDPPWITSFFMKSLYKRTKQ--GLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVX 3054
            RVFIQDPPWI+S FMK+L  R++   G+K+EF+E+ERRKY LLRRRQ++AETEAW+  V 
Sbjct: 76   RVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKVE 135

Query: 3053 XXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLP 2874
                      EKKLAPNLPYVKKL LGWFEPL E                  AP I+ LP
Sbjct: 136  EYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDALP 195

Query: 2873 ADKMAVIVMHKMMGLLMMG-QENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKI 2697
            ADKMAVIVMHKMMGLLMMG +E+RC                E+RIHSFLEK KK ++++I
Sbjct: 196  ADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNEKREI 255

Query: 2696 --VAQDGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLT 2523
               +Q     E  I+RKRV+SLIKR R++EV KLV++EE K WGRD QAKLGC LIELLT
Sbjct: 256  GDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIELLT 315

Query: 2522 ETAYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTAR 2343
            ++AYV  PVNQSAD PPD+RPAFRH+FKI  + P Q +VKRYGVIECDPLV  GLD+T +
Sbjct: 316  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVK 375

Query: 2342 HMIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALD 2163
            HMIIPY+PMLVPPKKWKGYDRGGYLFLPSYLMRTHGS+HQQ AVK+V  KQMQKVYEALD
Sbjct: 376  HMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALD 435

Query: 2162 TLGNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXX 1983
            TLGNTKWRVN+R+L+VVE+IWA GGNIAGLV+R+D+PIPE   S+D+ E           
Sbjct: 436  TLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKV 495

Query: 1982 XKINQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 1803
             KINQE HSQRCDTELKLSVARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV
Sbjct: 496  KKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 555

Query: 1802 LEFSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNR 1623
            LEF+EGRPLGKSGLRWLKIH+ANLY GGVEKLSYD+R++FVEN+++E+ DSA + LNGNR
Sbjct: 556  LEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNR 615

Query: 1622 WWLMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAA 1443
            WWL AEDPFQCLAACINL EALKS  PHTVISHLPIHQDGSCNGLQHYAALGRD FEAAA
Sbjct: 616  WWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 675

Query: 1442 VNLVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTS 1263
            VNLVAGDKP+DVYSEIA RVHNIM++DS KDP T+ HAL+AK+L+GQVDRKLVKQTVMTS
Sbjct: 676  VNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMTS 735

Query: 1262 VYGVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGD 1083
            VYGVTYVGAREQIKRRLEEKG ITDD+LLF+A+CYAAKVTLAALGE+FQAARAIM WLGD
Sbjct: 736  VYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAWLGD 795

Query: 1082 CAKVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFP 903
            CAK+IASEN+PVRWTTPLGLPVVQPYFK++RHVI+TSLQVLALQREG+SV V+KQRTAFP
Sbjct: 796  CAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 855

Query: 902  PNFVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPIL 723
            PNFVHSLDGSHMMMTAIACRDAGL+FAGVHDSFWTHACDV+ MN+ILR+KFV+LYSMPIL
Sbjct: 856  PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYSMPIL 915

Query: 722  ENLLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            ENLLESF+ SYP L FP LP+RGDF L++VI+SPYFFN
Sbjct: 916  ENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 953


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            [Nicotiana tabacum] gi|21425667|emb|CAC95021.2|
            chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score = 1391 bits (3600), Expect = 0.0
 Identities = 707/983 (71%), Positives = 802/983 (81%), Gaps = 12/983 (1%)
 Frame = -3

Query: 3521 PTS-WRTKNAKPNQNFRKNPNTLFLLTPNIQKTLRKFPLSSSSFPYNLKLPSINTSTSIH 3345
            PTS WRT+      NF    N  F       K  +   LS+SSFP  LKLP I+      
Sbjct: 11   PTSQWRTQKLPKRFNFYVIHNQEF------GKLSQSSSLSTSSFPKTLKLPVIHM----- 59

Query: 3344 LHPLSDSTDENFV-----ENLEELANLQTIPNGFHQIAPRESIRRVFIQDPPWITSFFMK 3180
              P+++   +  V     ENLEEL NLQ IPNGF     +ES +RVFIQDPPW++S FM 
Sbjct: 60   --PINNIQSQTTVCVSTDENLEELVNLQKIPNGFLN---KESNKRVFIQDPPWVSSLFMN 114

Query: 3179 SLYKRTKQ--GLKLEFKEIERRK-YNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKKLA 3009
            SL+ R KQ  G++ EF+EIERR+ Y +LRRRQI+AETEAW++MV           EKKLA
Sbjct: 115  SLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLA 174

Query: 3008 PNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMMGL 2829
            PNLPYVKKL LGWFEPL +                  APHI+ LPADKMAVIVMHK+MGL
Sbjct: 175  PNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGL 234

Query: 2828 LMMG-QENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIVAQ--DGLGKETEIL 2658
            LMMG +E RC                E+RIH+FLEK+KK Q+    AQ  + + KET IL
Sbjct: 235  LMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMIL 294

Query: 2657 RKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSADC 2478
            RKRV+SLIKR R+VEV+KL+K+EE + WGRD QAKLGCRL+ELLTETAYV  PV+QSAD 
Sbjct: 295  RKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADT 354

Query: 2477 PPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPKK 2298
            PPDIRPAFRH+FKI  +DP + +VK+YGVIECDPLV  G+DRT + M+IPY+PMLVPPKK
Sbjct: 355  PPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKK 414

Query: 2297 WKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVLS 2118
            W+GYD+GGYLFLPSYLMRTHGS+ QQ AV+ VP KQMQ+VYEALDTLG+TKWRVN+R+L+
Sbjct: 415  WRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILN 474

Query: 2117 VVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDTE 1938
            VVESIWAGGGNIAGLVDRKDVPIPE   SDD++E+           KINQE+HSQRCDTE
Sbjct: 475  VVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTE 534

Query: 1937 LKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLR 1758
            LKLSVARK+KDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEF+EGRPLGKSGLR
Sbjct: 535  LKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLR 594

Query: 1757 WLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAAC 1578
            WLKIHLA+LYAGGVEKL YD RL+FVENH+ ++LDSA++PLNGNRWWL AEDPFQCLAAC
Sbjct: 595  WLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAAC 654

Query: 1577 INLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYSE 1398
            INLSEALKSS PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAAVNLVAG+KPADVY+E
Sbjct: 655  INLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTE 714

Query: 1397 IAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIKR 1218
            IA RV +I+  DS KDPA +P+ALLAKLL+ QVDRKLVKQTVMTSVYGVTYVGAREQIKR
Sbjct: 715  IALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKR 774

Query: 1217 RLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRWT 1038
            RLEEKG I DDRLLF ASCYAAKVTLAALGE+FQAAR  M WLGDCAKVIA ENQPVRWT
Sbjct: 775  RLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWT 834

Query: 1037 TPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMMT 858
            TPLGLPVVQPYFKT+RHVI+TSLQ+LALQREG++V V+KQRTAFPPNFVHSLDGSHMMMT
Sbjct: 835  TPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMT 894

Query: 857  AIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPALT 678
            A+ACRDAGLQFAGVHDSFWTHACDV++MNRILREKFVELYS+PILE+LLE+FQKSYPALT
Sbjct: 895  AVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALT 954

Query: 677  FPSLPDRGDFDLQEVIDSPYFFN 609
            FP LP RGDF+L+EV++SPYFFN
Sbjct: 955  FPPLPKRGDFNLREVLESPYFFN 977


>ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris]
            gi|59800202|sp|P69242.1|RPOT3_NICSY RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic;
            AltName: Full=NsRpoT-C; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3;
            Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
            RecName: Full=DNA-directed RNA polymerase 3A,
            chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
            Full=T7 bacteriophage-type single subunit RNA polymerase
            3A; Flags: Precursor [Nicotiana tabacum]
            gi|21425641|emb|CAC82576.3| phage-type RNA polymerase
            [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2|
            plastid RNA polymerase [Nicotiana tabacum]
            gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
            gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 977

 Score = 1388 bits (3593), Expect = 0.0
 Identities = 709/981 (72%), Positives = 800/981 (81%), Gaps = 10/981 (1%)
 Frame = -3

Query: 3521 PTS-WRTKNAKPNQNFRKNPNTLFLLTPNIQKTLRKFPLSSSSFPYNLKLPSINTSTSIH 3345
            PTS WRT+      NF    N  F       K  +   L +SSFP  LKLP I    + +
Sbjct: 11   PTSQWRTQKLPKRFNFYVIHNQEF------GKLSQSSSLPTSSFPKTLKLPVIQMPINNN 64

Query: 3344 LHPLSD---STDENFVENLEELANLQTIPNGFHQIAPRESIRRVFIQDPPWITSFFMKSL 3174
            +   +    STDEN    LEEL NLQ I NG   +  +ES +RVFIQDPPW++S FM SL
Sbjct: 65   IQSQTTVCVSTDEN----LEELVNLQKIANG---VLTKESNKRVFIQDPPWVSSLFMNSL 117

Query: 3173 YKRTKQ--GLKLEFKEIERRK-YNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKKLAPN 3003
            + R KQ  G++ EF+EIERR+ Y +LRRRQI+AETEAW++MV           EKKLAPN
Sbjct: 118  FVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPN 177

Query: 3002 LPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMMGLLM 2823
            LPYVKKL LGWFEPL +                  APHI+ LPADKMAVIVMHK+MGLLM
Sbjct: 178  LPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLM 237

Query: 2822 MG-QENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIVAQ--DGLGKETEILRK 2652
            MG +E RC                E+RIH+FLEK+KK Q+    AQ  + + +ET ILRK
Sbjct: 238  MGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRK 297

Query: 2651 RVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSADCPP 2472
            RV+SLIKR R+VEV+KL+K+EE + WGRD QAKLGCRL+ELLTETAYV  PV+QSAD PP
Sbjct: 298  RVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPP 357

Query: 2471 DIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPKKWK 2292
            DIRPAFRH+F+I  +DP + +VK+YGVIECDPLV  G+DRT + M+IPY+PMLVPPKKW+
Sbjct: 358  DIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWR 417

Query: 2291 GYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVLSVV 2112
            GYD+GGYLFLPSYLMRTHGS+ QQ AV+SVP KQMQ+VYEALDTLG+TKWRVN+R+LSVV
Sbjct: 418  GYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVV 477

Query: 2111 ESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDTELK 1932
            ESIWAGGGNIAGLVDRKDVPIPE   SDD++E+           KINQE+HSQRCDTELK
Sbjct: 478  ESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELK 536

Query: 1931 LSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLRWL 1752
            LSVARK+KDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEF+EGRPLGKSGLRWL
Sbjct: 537  LSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 596

Query: 1751 KIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAACIN 1572
            KIHLA+LYAGG+EKL YD RL+FVENH+ ++LDSA++PLNGNRWWL AEDPFQCLAACIN
Sbjct: 597  KIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACIN 656

Query: 1571 LSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYSEIA 1392
            LSEALKSS PHTV SHLPIHQDGSCNGLQHYAALGRD  EAAAVNLVAGDKPADVY+EIA
Sbjct: 657  LSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIA 716

Query: 1391 ARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 1212
             RV +I+  DS KDPAT+P+ALLAKLL+ QVDRKLVKQTVMTSVYGVTYVGAREQIKRRL
Sbjct: 717  LRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 776

Query: 1211 EEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRWTTP 1032
            EEKG I DDRLLF ASCYAAKVTLAALGE+FQAAR  M WLGDCAKVIASENQPVRWTTP
Sbjct: 777  EEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTP 836

Query: 1031 LGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMMTAI 852
            LGLPVVQPYFKT+RHVI+TSLQVLALQREG++V V+KQRTAFPPNFVHSLDGSHMMMTA+
Sbjct: 837  LGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAV 896

Query: 851  ACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPALTFP 672
            ACRDAGLQFAGVHDSFWTHACDV++MNRILREKFVELYSMPILE+LLESFQ SYPALTFP
Sbjct: 897  ACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFP 956

Query: 671  SLPDRGDFDLQEVIDSPYFFN 609
             LP RGDFDL EV++SPYFFN
Sbjct: 957  PLPKRGDFDLVEVLESPYFFN 977


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1387 bits (3591), Expect = 0.0
 Identities = 699/985 (70%), Positives = 799/985 (81%), Gaps = 9/985 (0%)
 Frame = -3

Query: 3536 PGAHLPTSWRTKNAKPNQN----FRKNPNTLFLLTPNIQKTLRKFPLSSSSFPYNLKLPS 3369
            P A +    +  + KP++     F  NP+  F  +     T+ K  LSSSSF +N   PS
Sbjct: 11   PHAKIQKPKKLDHHKPHRTLPVLFTSNPSPHFHTS-----TISKNSLSSSSFRHNFHSPS 65

Query: 3368 INTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIRRVFIQDPPWITSF 3189
             ++++    H L  S   N +E L++ +N+Q           +ESI R+F+QDPPWI+SF
Sbjct: 66   HSSNSEAQCHALPLSPTNNSIETLQDSSNIQV----------KESIPRIFVQDPPWISSF 115

Query: 3188 FMKSLY---KRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEK 3018
                     +RT Q +KLEF+E ERR Y LLRRRQ++AETEAW++MV           EK
Sbjct: 116  LFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEK 175

Query: 3017 KLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKM 2838
            KLAPNLPYVK LFLGWFEPL E                  APHIELLPADKMAVIVMHKM
Sbjct: 176  KLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKM 235

Query: 2837 MGLLMMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIV--AQDGLGKETE 2664
            MGL+MMG E  C               QE+RIHSFLEK+K  +R K V  +Q+GL +E E
Sbjct: 236  MGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL-REKE 294

Query: 2663 ILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSA 2484
            ILRKRV+S I++++I+EVQKLVKNEEI PWGRD QAKLG RLIELLTETAYV +PVNQSA
Sbjct: 295  ILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSA 354

Query: 2483 DCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPP 2304
            DCPPD+RPAFRH FK V K+  QK  ++YGVIECDPLV  GLDRTA+HM+IPY+PML+PP
Sbjct: 355  DCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPP 414

Query: 2303 KKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRV 2124
            KKWKGYD+GGYLFLPSY+MRTHGS+ QQ AVKSVP +Q+QKV+EALDTLGNTKWR+NRRV
Sbjct: 415  KKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRV 474

Query: 2123 LSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCD 1944
            LSVVESIWA GGN+ GLVDR++VP+PEKP ++DL EI           KINQE HS RCD
Sbjct: 475  LSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCD 534

Query: 1943 TELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSG 1764
            TE+KLSVARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF+EGRPLGKSG
Sbjct: 535  TEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSG 594

Query: 1763 LRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLA 1584
            LRWLKI LANLYAGGVEKLSYD RL+FV+NHL +V DSA +PLNGNRWWL AEDPFQCLA
Sbjct: 595  LRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLA 654

Query: 1583 ACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVY 1404
            ACINLSEAL+SS PHTVISHLPIHQDGSCNGLQHYAALGR+  EA+AVNLVAG+KPADVY
Sbjct: 655  ACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVY 714

Query: 1403 SEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQI 1224
            SEIAARVH IM++DSNKDPAT+P ALLAK+L+GQVDRKLVKQTVMTSVYGVTY+GAREQI
Sbjct: 715  SEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQI 774

Query: 1223 KRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVR 1044
            KRRL EKG ITD+RLLF A+CYAAKVTLAALGEIFQAAR IM WLG+CAKVIASENQPV+
Sbjct: 775  KRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQ 834

Query: 1043 WTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMM 864
            WTTPLGLPV+QPY K+ERH+I+TSLQVLALQREG+ VV++KQRTAFPPNFVHSLDGSHMM
Sbjct: 835  WTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMM 894

Query: 863  MTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPA 684
            MTA+ACRDAGL FAGVHDSFWTHACDV++MN+ILREKFVELYSMPILENLLESFQ S+P 
Sbjct: 895  MTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPT 954

Query: 683  LTFPSLPDRGDFDLQEVIDSPYFFN 609
            LTFP LPDRG+FDL+EV++SPYFFN
Sbjct: 955  LTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1386 bits (3588), Expect = 0.0
 Identities = 688/935 (73%), Positives = 774/935 (82%), Gaps = 2/935 (0%)
 Frame = -3

Query: 3407 SSSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIR 3228
            SS+ FP NLK P       +H+ PL DS  +N VEN     N Q   + FH I P+ES  
Sbjct: 49   SSTHFPLNLKPPP----EPVHIPPLRDSIQDNIVENS---MNFQIPMSEFHLITPQESAP 101

Query: 3227 RVFIQDPPWITSFFMKSLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXX 3048
            R+FIQDPPWI S F+K +YKR  Q LKLE KEIERR YN+LRRRQI+AETEAW++MV   
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEY 161

Query: 3047 XXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPAD 2868
                    EKKLAPNLPYVK LFLGWFEPL E                  APHI+LLPAD
Sbjct: 162  KDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPAD 221

Query: 2867 KMAVIVMHKMMGLLMMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKK--IV 2694
            KMA+IVMHKMMGL+M+G ++ C               QE+RIHSFLEK+K  Q+KK  + 
Sbjct: 222  KMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVA 281

Query: 2693 AQDGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETA 2514
             +DGL KE EILRKRV  LI+R+R+ EVQKL+  EE+KPWGRDKQAKLG RLIELLTETA
Sbjct: 282  DEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETA 341

Query: 2513 YVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMI 2334
            YV  P++Q AD PPD+RPAFRH FK V K P QK+VK YGVIECDPLV TGLD+TA+HM+
Sbjct: 342  YVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHML 401

Query: 2333 IPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLG 2154
            IPY+PMLVPPK+WKGYD+GG+LFLPSY+MRTHGS+ Q  A++++   QMQKV+EALD LG
Sbjct: 402  IPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLG 461

Query: 2153 NTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKI 1974
            +TKWRVN++VLSVVESIWA GGNIAGLV+R+DVP+P+K  S+DL EI           KI
Sbjct: 462  STKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKI 521

Query: 1973 NQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1794
            NQE HSQRCDTELKLSVARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF
Sbjct: 522  NQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 581

Query: 1793 SEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWL 1614
            +EGRPLGKSGLRWLKIHLANLYAGGVEKLSY+ RL+FV+NH+ ++ DSA +P+NGNRWWL
Sbjct: 582  AEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWL 641

Query: 1613 MAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNL 1434
             AEDP QCLAACINLSEAL S  PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAAVNL
Sbjct: 642  TAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNL 701

Query: 1433 VAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYG 1254
            V GDKPADVYSEIAARVH IM++DSNKDP T+P+ALLA++LV Q+DRKLVKQTVMTSVYG
Sbjct: 702  VDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYG 761

Query: 1253 VTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAK 1074
            VTYVGAREQIKRRLEEKG ITDDRLLF A+CYAAKVTLAALGEIFQAAR IM WLGDCAK
Sbjct: 762  VTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAK 821

Query: 1073 VIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNF 894
            VIASENQPVRWTTPLGLPVVQPY K+ERH+I+TSLQVLALQRE NSV ++KQRTAFPPNF
Sbjct: 822  VIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNF 881

Query: 893  VHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENL 714
            VHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTH CDV++MN ILREKFVELYSMPILE+L
Sbjct: 882  VHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESL 941

Query: 713  LESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            LESFQ SYPALTFP LP+RGDFDL +V++SPYFFN
Sbjct: 942  LESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1385 bits (3585), Expect = 0.0
 Identities = 695/980 (70%), Positives = 793/980 (80%), Gaps = 3/980 (0%)
 Frame = -3

Query: 3539 SPGAHLPTSWRTKNAKPNQNFRKNPNTLFLLTPNIQKTLRKFPLSSSSFPYNLKLPSINT 3360
            +P    PT  R K   P +  +K    LFL  P +  +L  FP     FP NL  P    
Sbjct: 12   TPQIQYPT--RRKPPLPQKPHKKP--LLFLPKPTLHPSLVSFP-----FPLNLNSPP--- 59

Query: 3359 STSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIRRVFIQDPPWITSFFMK 3180
                   PL DS  +NFVEN+E  +N        HQI   ES  R+FIQDPPWI++ F+K
Sbjct: 60   -NPARFCPLHDSLHDNFVENIENPSNFLLPKAQSHQILSPESTPRLFIQDPPWISALFLK 118

Query: 3179 SLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKKLAPNL 3000
             LYK T Q +K+E KEIE+RKYNLLRRRQ++ ETEAW+KMV           EKKLAPNL
Sbjct: 119  GLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNL 178

Query: 2999 PYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXA--PHIELLPADKMAVIVMHKMMGLL 2826
            PYVK LFLGWFEP+ E                  A  PHIELLPADKMAVIVMHKMMGL+
Sbjct: 179  PYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLV 238

Query: 2825 MMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIVAQ-DGLGKETEILRKR 2649
            M  QEN                 QE+RIH+FLEK+K  QRKK   +  GL KE EIL+KR
Sbjct: 239  MGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKR 298

Query: 2648 VQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSADCPPD 2469
            V SLI+R+R+VEVQKLVKNEEIKPWGRD QAKLG RL+ELLTETAYV  P++QS D PPD
Sbjct: 299  VNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPD 358

Query: 2468 IRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPKKWKG 2289
            ++PAFRH FK + KDP +K++KRYGVIECDPL+ +GLDR+A+HM+IPY+PMLVPPKKWKG
Sbjct: 359  VQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKG 418

Query: 2288 YDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVLSVVE 2109
            YD+GGYLFLPSY+MRTHGS+ QQ A+K V VK+MQKV+EALDTLG+TKWRVN++VL+VVE
Sbjct: 419  YDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVE 478

Query: 2108 SIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDTELKL 1929
            SIWA GGNIAGLVDR D+PIPEKP S+D  E            KIN+E HSQRCDTELKL
Sbjct: 479  SIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKL 538

Query: 1928 SVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLRWLK 1749
            SVARKM++EE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF+EGRPLG+SGL WLK
Sbjct: 539  SVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLK 598

Query: 1748 IHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAACINL 1569
            IHLANL+AGGVEKLS+D RL+FV+NHL ++ DSA +P+NGNRWWL AEDPFQCLAACINL
Sbjct: 599  IHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINL 658

Query: 1568 SEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYSEIAA 1389
            SE+LKSS PH+V+S+LPIHQDGSCNGLQHYAALGRD  EAAAVNLVAG+KPADVYSEIA 
Sbjct: 659  SESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAV 718

Query: 1388 RVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 1209
            RVHNIM++DS+KDPATNP+A LAKLL+ QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLE
Sbjct: 719  RVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 778

Query: 1208 EKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRWTTPL 1029
            EKGHITDDR+LF A+CY AKVTLAALGE+FQAAR IMGWLGDCAKVIASENQPV+WTTPL
Sbjct: 779  EKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPL 838

Query: 1028 GLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMMTAIA 849
            GLPVVQPY+K+ERH+I+TSLQVLALQREG+SV V+KQRTAFPPNFVHSLDGSHMMMTA+A
Sbjct: 839  GLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVA 898

Query: 848  CRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPALTFPS 669
            CRDAGL FAGVHDSFWTHACDVE+MN+ILREKFVELYSMP+LENL ES Q SYP+L FP 
Sbjct: 899  CRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPP 958

Query: 668  LPDRGDFDLQEVIDSPYFFN 609
            LP+RG+FDL+EV+ SPYFFN
Sbjct: 959  LPERGNFDLREVLKSPYFFN 978


>ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus
            euphratica]
          Length = 983

 Score = 1380 bits (3572), Expect = 0.0
 Identities = 694/979 (70%), Positives = 785/979 (80%), Gaps = 9/979 (0%)
 Frame = -3

Query: 3518 TSWRTKNAKPNQN--FRKNPNTLFLLTPNIQKTLRKFPLSSSSFPYNLKLPSINTSTSIH 3345
            TS   +  KP +N  F  NP +  L  P+         + SSSFP N K P +N S  + 
Sbjct: 16   TSKHPRFHKPYKNLHFLSNPTSHSLSNPS--------SIYSSSFPLNSKFPLLNPS--LP 65

Query: 3344 LHPLSDSTDENFVENLE-----ELANLQTIPNGFHQIAPRESIRRVFIQDPPWITSFFMK 3180
             HPL DS+ +  +E+ E         L+T+   F QI   ES +RVFIQDPPWI++ F K
Sbjct: 66   FHPLHDSSHDRLLEDFEIPTICSHQKLETLIK-FDQIMHGESSKRVFIQDPPWISAHFWK 124

Query: 3179 SLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKKLAPNL 3000
             +YK   + +K+EFK+IE+RKYNLLRRRQIR ETEAW++M            E+KLAPNL
Sbjct: 125  GVYKIANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNL 184

Query: 2999 PYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMMGLLMM 2820
            PYVK L LGWFEPL E                  +P+IELLPADKMAVIVMHKMMGLLM+
Sbjct: 185  PYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMV 244

Query: 2819 GQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIV--AQDGLGKETEILRKRV 2646
            G E+ C               QE+RIH+FLEK+K  QRKK +   Q+ + KE E+LRKRV
Sbjct: 245  GHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRV 304

Query: 2645 QSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSADCPPDI 2466
             SLI+R+R++EVQ LVK +E KPW R  QAKLG RLIELLTETAYV  PVNQS D PPD+
Sbjct: 305  NSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDV 364

Query: 2465 RPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPKKWKGY 2286
            RPAFRH+FK + K+P QK+VK+YGVIECDPL+ TGLD TA+HM+IPY PMLVPPKKWKGY
Sbjct: 365  RPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGY 424

Query: 2285 DRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVLSVVES 2106
            D+GG+LFLPSY+MRTHGS+ QQ AV+SVP KQMQKV+EALDTLGNTKWRVNRR+L VVE 
Sbjct: 425  DKGGHLFLPSYIMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVER 484

Query: 2105 IWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDTELKLS 1926
            IW  GGNIAGLVDR+D+PIPEKP SDDL EI           KINQE HSQRCDTELKLS
Sbjct: 485  IWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLS 544

Query: 1925 VARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLRWLKI 1746
            VARK+KDEE FYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF EGRPLGKSGLRWLKI
Sbjct: 545  VARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKI 604

Query: 1745 HLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAACINLS 1566
            HLANLY+GGVEKLS+D RL+FVENHL+E+ DSA +P+NG RWWL AEDPFQCLAACINLS
Sbjct: 605  HLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLS 664

Query: 1565 EALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYSEIAAR 1386
            EAL S+ PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAAVNLVA +KP+DVYSEIA R
Sbjct: 665  EALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAAEKPSDVYSEIAVR 724

Query: 1385 VHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 1206
            VH I+ +DSNKDPATNPHALLAK+LV QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE
Sbjct: 725  VHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 784

Query: 1205 KGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRWTTPLG 1026
            KGHITDDRLLF+A+CY AKVTL ALGE+FQAAR IM WLGDCAK+IASE+QPV+WTTPLG
Sbjct: 785  KGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLG 844

Query: 1025 LPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMMTAIAC 846
            LPVVQPY+K ERH+IKTSLQ+LALQREG+SV V+KQRTAFPPNFVHSLDGSHMMMTA+AC
Sbjct: 845  LPVVQPYYKRERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVAC 904

Query: 845  RDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPALTFPSL 666
            RDAGL FAGVHDSFWTHA DV+ MNRILREKFVELY+MPILENLLE FQ SYP L FP L
Sbjct: 905  RDAGLCFAGVHDSFWTHARDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPPL 964

Query: 665  PDRGDFDLQEVIDSPYFFN 609
            P+RG+FDLQ+V+ SPYFFN
Sbjct: 965  PERGNFDLQKVLRSPYFFN 983


>ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
          Length = 976

 Score = 1380 bits (3572), Expect = 0.0
 Identities = 686/935 (73%), Positives = 773/935 (82%), Gaps = 2/935 (0%)
 Frame = -3

Query: 3407 SSSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIR 3228
            SS+ FP +LK P       +H+ PL DS  +N VEN     N Q   + FH I P+ES  
Sbjct: 49   SSTHFPLSLKPPP----EPVHIPPLRDSIQDNIVENS---MNFQIPMSEFHLITPQESGP 101

Query: 3227 RVFIQDPPWITSFFMKSLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXX 3048
            R+FIQDPPWI S F+K +YKR  Q LKLE KEIERR YNLLRRRQI+AETEAW++MV   
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNLLRRRQIKAETEAWERMVDEY 161

Query: 3047 XXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPAD 2868
                    EKKLAPNLPYVK LFLGWFEPL E                  APHI+LLPAD
Sbjct: 162  KDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPAD 221

Query: 2867 KMAVIVMHKMMGLLMMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKK--IV 2694
            KMA+IVMHKMMGL+M+G ++ C               QE+RIHSFLEK+K  Q+KK  + 
Sbjct: 222  KMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVA 281

Query: 2693 AQDGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETA 2514
             +DGL KE EILRKRV  LI+R+R+ EVQKL+  EE+KPWGRDKQAKLG RLIELLTETA
Sbjct: 282  DEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETA 341

Query: 2513 YVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMI 2334
            YV  P++Q A+ PPD+RPAFRH FK V K P QK+VK YGVIECDPLV TGLD+TA+HM+
Sbjct: 342  YVQPPLSQLAESPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHML 401

Query: 2333 IPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLG 2154
            IPY+PMLVPPK+WKGYD+GG+LFLPSY+MRTHGS+ Q  A++++   QMQKV+EALD LG
Sbjct: 402  IPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLG 461

Query: 2153 NTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKI 1974
            +TKWRVN++VLSVVESIWA GGNIAGLV+R+DVP+P+K  S+DL EI           KI
Sbjct: 462  STKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKI 521

Query: 1973 NQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1794
            NQE HS RCDTELKLSVARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF
Sbjct: 522  NQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 581

Query: 1793 SEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWL 1614
            +EGRPLGKSGLRWLKIHLANLYAGGVEKLSY+ RL+FV+NH+ ++ DSA +P+NGNRWWL
Sbjct: 582  AEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWL 641

Query: 1613 MAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNL 1434
             AEDP QCLAACINLSEAL S  PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAAVNL
Sbjct: 642  TAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNL 701

Query: 1433 VAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYG 1254
            V GDKPADVYSEIAARVH IM++DSNKDP T+P+ALLA++LV Q+DRKLVKQTVMTSVYG
Sbjct: 702  VDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYG 761

Query: 1253 VTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAK 1074
            VTYVGAREQIKRRLEEKG ITDDRLLF A+CYAAKVTLAALGEIFQAAR IM WLGDCAK
Sbjct: 762  VTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAK 821

Query: 1073 VIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNF 894
            VIASENQPVRWTTPLGLPVVQPY K+ERH+I+TSLQVLALQRE NSV ++KQRTAFPPNF
Sbjct: 822  VIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNF 881

Query: 893  VHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENL 714
            VHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTH CDV++MN ILREKFVELYSMPILE+L
Sbjct: 882  VHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESL 941

Query: 713  LESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            LESFQ SYPALTFP LP+RGDFDL +V++SPYFFN
Sbjct: 942  LESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythranthe guttata]
          Length = 941

 Score = 1378 bits (3567), Expect = 0.0
 Identities = 688/938 (73%), Positives = 781/938 (83%), Gaps = 5/938 (0%)
 Frame = -3

Query: 3407 SSSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIR 3228
            SSSSFP NLKLPS++    +   P+SDS+D+NF  NL+++A LQ            ES  
Sbjct: 16   SSSSFPQNLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQ------------ESKD 63

Query: 3227 RVFIQDPPWITSFFMKSLYKRTKQ--GLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVX 3054
            RVFIQDPPWI+S FMK+L  R++   G+K+EF+E+ERRKY LLRRRQ++AETEAW+  V 
Sbjct: 64   RVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKVE 123

Query: 3053 XXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLP 2874
                      EKKLAPNLPYVKKL LGWFEPL E                  AP I+ LP
Sbjct: 124  EYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDALP 183

Query: 2873 ADKMAVIVMHKMMGLLMMG-QENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKI 2697
            ADKMAVIVMHKMMGLLMMG +E+RC                E+RIHSFLEK KK ++++I
Sbjct: 184  ADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNEKREI 243

Query: 2696 --VAQDGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLT 2523
               +Q     E  I+RKRV+SLIKR R++EV KLV++EE K WGRD QAKLGC LIELLT
Sbjct: 244  GDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIELLT 303

Query: 2522 ETAYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTAR 2343
            ++AYV  PVNQSAD PPD+RPAFRH+FKI  + P Q +VKRYGVIECDPLV  GLD+T +
Sbjct: 304  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTVK 363

Query: 2342 HMIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALD 2163
            HMIIPY+PMLVPPKKWKGYDRGGYLFLPSYLMRTHGS+HQQ AVK+V  KQMQKVYEALD
Sbjct: 364  HMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEALD 423

Query: 2162 TLGNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXX 1983
            TLGNTKWRVN+R+L+VVE+IWA GGNIAGLV+R+D+PIPE   S+D+ E           
Sbjct: 424  TLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRKV 483

Query: 1982 XKINQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 1803
             KINQE HSQRCDTELKLSVARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV
Sbjct: 484  KKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 543

Query: 1802 LEFSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNR 1623
            LEF+EGRPLGKSGLRWLKIH+ANLY GGVEKLSYD+R++FVEN+++E+ DSA + LNGNR
Sbjct: 544  LEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGNR 603

Query: 1622 WWLMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAA 1443
            WWL AEDPFQCLAACINL EALKS  PHTVISHLPIHQDGSCNGLQHYAALGRD FEAAA
Sbjct: 604  WWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 663

Query: 1442 VNLVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTS 1263
            VNLVAGDKP+DVYSEIA RVHNIM++DS KDP T+ HAL+AK+L+GQVDRKLVKQTVMTS
Sbjct: 664  VNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMTS 723

Query: 1262 VYGVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGD 1083
            VYGVTYVGAREQIKRRLEEKG ITDD+LLF+A+CYAAKVTLAALGE+FQAARAIM WLGD
Sbjct: 724  VYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAWLGD 783

Query: 1082 CAKVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFP 903
            CAK+IASEN+PVRWTTPLGLPVVQPYFK++RHVI+TSLQVLALQREG+SV V+KQRTAFP
Sbjct: 784  CAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 843

Query: 902  PNFVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPIL 723
            PNFVHSLDGSHMMMTAIACRDAGL+FAGVHDSFWTHACDV+ MN+ILR+KFV+LYSMPIL
Sbjct: 844  PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYSMPIL 903

Query: 722  ENLLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            ENLLESF+ SYP L FP LP+RGDF L++VI+SPYFFN
Sbjct: 904  ENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 941


>ref|XP_012071554.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha
            curcas]
          Length = 993

 Score = 1375 bits (3560), Expect = 0.0
 Identities = 689/983 (70%), Positives = 794/983 (80%), Gaps = 14/983 (1%)
 Frame = -3

Query: 3515 SWRTKNAKPNQNFRKNPNTLFLLTPNIQKTLRKFPLSSSSFPYNLKLPSINTSTSIHLHP 3336
            +W  K  K N+ ++ + N LFL  P I  +L    LSSSSFP N K P       +  HP
Sbjct: 17   NWSIKPPKFNKIYKPHKNLLFLSVP-ISHSLSNTSLSSSSFPLNPKFPR----KLLPSHP 71

Query: 3335 LSDSTDENFVENLEE-LANLQTIPNGF-----------HQIAPRESIRRVFIQDPPWITS 3192
            L D+T+E+ +E+++  + NLQ   N             HQI  +ES +RVFIQDPPWI++
Sbjct: 72   LHDATEEHLLEDMDNSMPNLQNFENLIKFDLPSCSSQNHQILGQESPKRVFIQDPPWISA 131

Query: 3191 FFMKSLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKKL 3012
             F+K LYK   +  K+EFK+IE+RKYNLLRRRQIR ETEAW++M            +KKL
Sbjct: 132  LFLKGLYKVANRKFKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYKGMVREMCDKKL 191

Query: 3011 APNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMMG 2832
            APNLPYVK LFLGWFEPL E                  APHIELLPADKMA+IVMHKMMG
Sbjct: 192  APNLPYVKGLFLGWFEPLKEAIEAEQKLQRSKKQKSAFAPHIELLPADKMALIVMHKMMG 251

Query: 2831 LLMMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIV--AQDGLGKETEIL 2658
            L+M+G E+ C               QE+RIH+FLEK+K  QRK  V  AQ+ L KE E+L
Sbjct: 252  LMMVGHEDGCVPVVQAAVQIGMAVEQEVRIHNFLEKTKSFQRKNAVGDAQESLSKEKEVL 311

Query: 2657 RKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSADC 2478
            RKR+ +LI+R+R+++VQKLV+NEE KPWGRD QAKLG RL+ELL E+A+V  PVNQS D 
Sbjct: 312  RKRINNLIRRKRLIQVQKLVRNEETKPWGRDTQAKLGSRLVELLIESAFVQPPVNQSPDT 371

Query: 2477 PPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPKK 2298
             PD+RPAFRH F+    +P +K++KRYGVIECDPLV  GLD +A+HM+IPY PMLVPPKK
Sbjct: 372  LPDVRPAFRHRFRTA-NNPGRKIMKRYGVIECDPLVLAGLDGSAKHMMIPYFPMLVPPKK 430

Query: 2297 WKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVLS 2118
            WKGYD+GG+ FLPS+LMRTHGS+ QQ A+K VP K MQKV+EALDTLGNTKWRVNRRVL 
Sbjct: 431  WKGYDKGGHFFLPSFLMRTHGSRKQQDALKHVPGKNMQKVFEALDTLGNTKWRVNRRVLD 490

Query: 2117 VVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDTE 1938
            VVESIWAGGGNIAGLVDR D+PIPEKP S+DL EI           KIN+EMHSQRCDTE
Sbjct: 491  VVESIWAGGGNIAGLVDRADIPIPEKPISEDLTEIQKWRWSMRKAKKINREMHSQRCDTE 550

Query: 1937 LKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLR 1758
            LKLSVARK+KDE+ FYYPHNLDFRGRAYPMHPHL+HLSSDL RG+LEF+EGRPLGKSGL 
Sbjct: 551  LKLSVARKLKDEDGFYYPHNLDFRGRAYPMHPHLSHLSSDLSRGILEFAEGRPLGKSGLH 610

Query: 1757 WLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAAC 1578
            WLKIHLANLY+GGV+KLS++ RL+FVENHL E+ DSA +P++G RWWLMAEDPFQCLAAC
Sbjct: 611  WLKIHLANLYSGGVKKLSHEGRLAFVENHLDEIFDSAANPVHGKRWWLMAEDPFQCLAAC 670

Query: 1577 INLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYSE 1398
            INLSEALKSS P+ VISHLPIHQDGSCNGLQHYAALGR+  EAAAVNLVAG+KPADVY+E
Sbjct: 671  INLSEALKSSSPYNVISHLPIHQDGSCNGLQHYAALGRNSLEAAAVNLVAGEKPADVYTE 730

Query: 1397 IAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIKR 1218
            IA RVH I+ KDS+KDPATNP+ALLAKLL+ QVDRKLVKQTVMTSVYGVTYVGAREQIKR
Sbjct: 731  IAVRVHEIILKDSSKDPATNPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKR 790

Query: 1217 RLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRWT 1038
            RLEEKGHITDDRLLF+A+CY AKVT+ ALGE+FQAAR IM WLGDCAKVIASE+QPVRWT
Sbjct: 791  RLEEKGHITDDRLLFSAACYTAKVTMKALGELFQAARDIMSWLGDCAKVIASEDQPVRWT 850

Query: 1037 TPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMMT 858
            TPLGLPVVQPYFK++RH+I+TSLQVLALQREG+SV V+KQRTAFPPNFVHSLDGSHMMMT
Sbjct: 851  TPLGLPVVQPYFKSKRHLIRTSLQVLALQREGSSVEVRKQRTAFPPNFVHSLDGSHMMMT 910

Query: 857  AIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPALT 678
            A+ACRDA L+FAGVHDSFWTHACDV+ MNRILR+KFVELY MPILENLLE FQ SYPALT
Sbjct: 911  AVACRDADLRFAGVHDSFWTHACDVDLMNRILRDKFVELYRMPILENLLEDFQTSYPALT 970

Query: 677  FPSLPDRGDFDLQEVIDSPYFFN 609
            FP LP+RG+FDLQEV+ SPYFFN
Sbjct: 971  FPPLPERGNFDLQEVLKSPYFFN 993


>ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
            [Nicotiana tomentosiformis]
          Length = 919

 Score = 1374 bits (3557), Expect = 0.0
 Identities = 682/905 (75%), Positives = 770/905 (85%), Gaps = 6/905 (0%)
 Frame = -3

Query: 3305 ENLEELANLQTIPNGFHQIAPRESIRRVFIQDPPWITSFFMKSLYKRTKQ--GLKLEFKE 3132
            ENLEEL NLQ IPNGF     +ES +RVFIQDPPW++S FM SL+ R KQ  G++ EF+E
Sbjct: 18   ENLEELVNLQKIPNGFLN---KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFRE 74

Query: 3131 IERRK-YNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLS 2955
            IERR+ Y +LRRRQI+AETEAW++MV           EKKLAPNLPYVKKL LGWFEPL 
Sbjct: 75   IERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLR 134

Query: 2954 EXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMMGLLMMG-QENRCXXXXXXXX 2778
            +                  APHI+ LPADKMAVIVMHK+MGLLMMG +E RC        
Sbjct: 135  QAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAV 194

Query: 2777 XXXXXXXQEIRIHSFLEKSKKCQRKKIVAQ--DGLGKETEILRKRVQSLIKRQRIVEVQK 2604
                    E+RIH+FLEK+KK Q+    AQ  + + +ET ILRKRV+SLIKR R+VEV+K
Sbjct: 195  QIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRK 254

Query: 2603 LVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSADCPPDIRPAFRHLFKIVPKD 2424
            L+K+EE + WGRD QAKLGCRL+ELLTETAYV  PV+QSAD PPDIRPAFRH+FKI  +D
Sbjct: 255  LMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRD 314

Query: 2423 PRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMR 2244
            P + +VK+YGVIECDPLV  G+DRT + M+IPY+PMLVPPKKW+GYD+GGYLFLPSYLMR
Sbjct: 315  PGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMR 374

Query: 2243 THGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVLSVVESIWAGGGNIAGLVDR 2064
            THGS+ QQ AV+ VP KQMQ+VYEALDTLG+TKWRVN+R+L+VVESIWAGGGNIAGLVDR
Sbjct: 375  THGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDR 434

Query: 2063 KDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDTELKLSVARKMKDEESFYYP 1884
            KDVPIPE   SDD++E+           KINQE+HSQRCDTELKLSVARK+KDEE FYYP
Sbjct: 435  KDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYP 494

Query: 1883 HNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLRWLKIHLANLYAGGVEKLS 1704
            HNLDFRGRAYPMHPHLNHLSSDLCRG+LEF+EGRPLGKSGLRWLKIHLA+LYAGGVEKL 
Sbjct: 495  HNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLC 554

Query: 1703 YDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAACINLSEALKSSLPHTVISH 1524
            YD RL+FVENH+ ++LDSA++PLNGNRWWL AEDPFQCLAACINLSEALKSS PHTVISH
Sbjct: 555  YDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISH 614

Query: 1523 LPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYSEIAARVHNIMEKDSNKDPA 1344
            LPIHQDGSCNGLQHYAALGRD  EAAAVNLVAG+KPADVY+EIA RV +I+  DS KDPA
Sbjct: 615  LPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPA 674

Query: 1343 TNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFNAS 1164
             +P+ALLAKLL+ QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF AS
Sbjct: 675  IDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTAS 734

Query: 1163 CYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTERHV 984
            CYAAKVTLAALGE+FQAAR  M WLGDCAKVIA ENQPVRWTTPLGLPVVQPYFKT+RHV
Sbjct: 735  CYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHV 794

Query: 983  IKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLQFAGVHDSF 804
            I+TSLQ+LALQREG++V V+KQRTAFPPNFVHSLDGSHMMMTA+ACRDAGLQFAGVHDSF
Sbjct: 795  IRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSF 854

Query: 803  WTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPALTFPSLPDRGDFDLQEVIDS 624
            WTHACDV++MNRILREKFVELYS+PILE+LLE+FQKSYPALTFP LP RGDF+L+EV++S
Sbjct: 855  WTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLES 914

Query: 623  PYFFN 609
            PYFFN
Sbjct: 915  PYFFN 919


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
            raimondii] gi|763786877|gb|KJB53873.1| hypothetical
            protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1372 bits (3552), Expect = 0.0
 Identities = 688/955 (72%), Positives = 782/955 (81%), Gaps = 10/955 (1%)
 Frame = -3

Query: 3443 PNIQKTLRK--FPLSSSSFPYNLKLP---SINTSTSI-HLHPLSDSTDENFVENLEELAN 3282
            P  QK  +K  F L   +FP     P   S+N  T      PL DS  +N V+N+E    
Sbjct: 19   PTSQKPHKKPLFSLPKQAFPLIFSFPIHRSLNYPTKPPRFLPLCDSLQDNIVQNIENPKK 78

Query: 3281 LQTIPNGF-HQIAPRESIRRVFIQDPPWITSFFMKSLYKRTKQGLKLEFKEIERRKYNLL 3105
            L  +PN    QI   ES  R+FIQDPPWI++ F K LYK T Q +K+E KEIE+RKYNLL
Sbjct: 79   L-LLPNAHSRQILSPESAPRIFIQDPPWISALFWKGLYKMTNQTVKIEHKEIEKRKYNLL 137

Query: 3104 RRRQIRAETEAWDKMVXXXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXX 2925
            RRRQ++ ETEAW+KMV           EKKLAPNLPYVK LFLGWFEPL E         
Sbjct: 138  RRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKVQ 197

Query: 2924 XXXXXXXXXA--PHIELLPADKMAVIVMHKMMGLLMMGQENRCXXXXXXXXXXXXXXXQE 2751
                     A  PHIELLPADK+AVIVMHKMMGL+M  +E+                 QE
Sbjct: 198  KGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVMGAEEDGYVQVVQAAVHIGVAIEQE 257

Query: 2750 IRIHSFLEKSKKCQRKKIVAQ-DGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPW 2574
            +RIHSFLEK+K  QRK+IV +  G  KE EILRKRV SLI+R+R+ EVQKLVKNEEIKPW
Sbjct: 258  VRIHSFLEKTKNYQRKQIVDEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKNEEIKPW 317

Query: 2573 GRDKQAKLGCRLIELLTETAYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYG 2394
            GRD QAKLG RL+ELLTETAYV  P++QS D P D+RPAFRH FK + + P QK+ KRYG
Sbjct: 318  GRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKKRYG 377

Query: 2393 VIECDPLVFTGLDRTARHMIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAA 2214
            VIECDPL+ +GLD++A+HM+IPY+PMLVPPKKWKGYD+GGYLFLPSY+MRTHGS+ QQ A
Sbjct: 378  VIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEA 437

Query: 2213 VKSVPVKQMQKVYEALDTLGNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQ 2034
            +K V VK M+KV+EALDTLG+TKWRVN +VL+VVESIWA GGNIAGLVDR D+PIPEKP 
Sbjct: 438  LKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPEKPY 497

Query: 2033 SDDLLEIXXXXXXXXXXXKINQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAY 1854
            S+D  EI           K+N+E HSQRCDTELKLSVARKM++EE FYYPHNLDFRGRAY
Sbjct: 498  SEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAY 557

Query: 1853 PMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVEN 1674
            PMHPHLNHLSSDLCRGVLEF+EGRPLG+SGL WLKIHLANLY+GGVEKLS+D RL+FV+N
Sbjct: 558  PMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAFVDN 617

Query: 1673 HLAEVLDSAHHPLNGNRWWLMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCN 1494
            HL E+ DSA +P+NGNRWWL AEDPFQCLAAC+NLSEALKS+ PH++IS+LPIHQDGSCN
Sbjct: 618  HLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDGSCN 677

Query: 1493 GLQHYAALGRDGFEAAAVNLVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKL 1314
            GLQHYAALGRD  EAAAVNLVAG+KPADVYSEIA RVHNIM++DSNKDPATNP+ALLAKL
Sbjct: 678  GLQHYAALGRDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALLAKL 737

Query: 1313 LVGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAA 1134
            L+ QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKGHITDDRLLF+A+CY AKVTLAA
Sbjct: 738  LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAA 797

Query: 1133 LGEIFQAARAIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLAL 954
            LGE+FQAAR IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY+K+ERH+I+T+LQVLAL
Sbjct: 798  LGELFQAARNIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLAL 857

Query: 953  QREGNSVVVKKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEM 774
            QREGNSV V+KQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVE+M
Sbjct: 858  QREGNSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKM 917

Query: 773  NRILREKFVELYSMPILENLLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            N+ILREKFVELYSMP+LENLLESF+ SYP L FP LP+RG+FDL+EV+ SPYFFN
Sbjct: 918  NQILREKFVELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLREVLKSPYFFN 972


>ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x
            bretschneideri]
          Length = 972

 Score = 1372 bits (3550), Expect = 0.0
 Identities = 684/937 (72%), Positives = 768/937 (81%), Gaps = 2/937 (0%)
 Frame = -3

Query: 3413 PLSSSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRES 3234
            P  S+ FP +L+ P       +  H + DS  +N VEN     NLQ     FH I P ES
Sbjct: 43   PSLSTPFPLSLQPPP----EPVLSHLVRDSVQDNLVENS---MNLQLPIREFHLITPDES 95

Query: 3233 IRRVFIQDPPWITSFFMKSLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVX 3054
              R+FIQDPPWI + F+K +YK+  Q LKLE KEI+RRKYNLLRRRQI+AETEAW++MV 
Sbjct: 96   APRIFIQDPPWIAALFLKGMYKKANQELKLESKEIDRRKYNLLRRRQIKAETEAWERMVE 155

Query: 3053 XXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLP 2874
                      EKKLAP+LPYVK LFLGWFEPL E                  APHI+LLP
Sbjct: 156  EYKDLERVMREKKLAPSLPYVKTLFLGWFEPLREAIAREQQVQQTKKHKAAFAPHIDLLP 215

Query: 2873 ADKMAVIVMHKMMGLLMMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKK-- 2700
             DKMA+IVMHKMMGL+M+G ++ C               QE+RIHSFLEK+K  QRKK  
Sbjct: 216  PDKMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNFQRKKTA 275

Query: 2699 IVAQDGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTE 2520
            +  +D L KE EILRKRV  LIKR+R+ EVQKL+  EE KPWGRD QAKLG RLIELLTE
Sbjct: 276  VADEDSLIKEKEILRKRVNVLIKRKRLREVQKLLVKEEFKPWGRDTQAKLGSRLIELLTE 335

Query: 2519 TAYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARH 2340
            TAYV  P+NQ AD PPD+RPAFRH FK   K P QK+VK YGVIECDPLV TGLD+TA+H
Sbjct: 336  TAYVQPPLNQLADGPPDVRPAFRHRFKAAAKTPGQKLVKNYGVIECDPLVLTGLDKTAKH 395

Query: 2339 MIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDT 2160
            M+IPY+PMLVPP+KWKGYD+GG+LFLPSY+MRTHGS+ Q   ++++  KQMQKV+EALD 
Sbjct: 396  MLIPYVPMLVPPRKWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGKQMQKVFEALDM 455

Query: 2159 LGNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXX 1980
            LG+TKWRVN++VL+VVESIWA GGNIAGLVDR+DVP+P+KP  + L EI           
Sbjct: 456  LGSTKWRVNKKVLNVVESIWARGGNIAGLVDREDVPVPDKPPLEGLTEIQEWKWSVRKAK 515

Query: 1979 KINQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 1800
            KINQE HS RCDTELKLSVARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL
Sbjct: 516  KINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 575

Query: 1799 EFSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRW 1620
            EF+EGRPLGKSGLRWLKIHLANLYAGGVEKLSY+ER +FV++H+ ++ DSA +P+NGNRW
Sbjct: 576  EFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEERHAFVDHHIDDIFDSATNPVNGNRW 635

Query: 1619 WLMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAV 1440
            WL AEDP QCLAACINLSEAL S  PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAAV
Sbjct: 636  WLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAV 695

Query: 1439 NLVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSV 1260
            NLVAG+KPADVYSEIAARVH IME+DSNKDP T+P+ALLA++LV Q+DRKLVKQTVMTSV
Sbjct: 696  NLVAGEKPADVYSEIAARVHEIMERDSNKDPTTSPNALLARVLVNQIDRKLVKQTVMTSV 755

Query: 1259 YGVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDC 1080
            YGVTYVGAREQIKRRLEEKG ITDDRLLF A+CYAAKVTLAALGEIFQAAR IMGWLGDC
Sbjct: 756  YGVTYVGAREQIKRRLEEKGFITDDRLLFTAACYAAKVTLAALGEIFQAARGIMGWLGDC 815

Query: 1079 AKVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPP 900
            AKVIASENQPVRWTTPLGLPVVQPY K ERH+I+TSLQVLALQRE NS+ V+KQRTAFPP
Sbjct: 816  AKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRESNSIDVRKQRTAFPP 875

Query: 899  NFVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILE 720
            NFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDV++MN ILREKF+ELYSMPILE
Sbjct: 876  NFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHACDVDQMNEILREKFIELYSMPILE 935

Query: 719  NLLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            NLLESFQ SYPALTFP LP+RGDFDLQEV++SPYFFN
Sbjct: 936  NLLESFQASYPALTFPPLPERGDFDLQEVLESPYFFN 972


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 973

 Score = 1367 bits (3539), Expect = 0.0
 Identities = 692/984 (70%), Positives = 786/984 (79%), Gaps = 6/984 (0%)
 Frame = -3

Query: 3542 SSPGAHLPTSWRTKNAKPNQNFRKNPNTLFLL---TPNIQKTLRKFPLSSSS-FPYNLKL 3375
            SS  A    SWR     P  N  K+  TL  L   T N      K  LSSS+ FP +L+ 
Sbjct: 7    SSISATATHSWRRP---PKLNPTKSLKTLHFLFNSTSNSNSLFFKPSLSSSTHFPLSLRP 63

Query: 3374 PSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRESIRRVFIQDPPWIT 3195
            P       I  HPL+DS  +N VENLE     Q +P          S  R+FIQDPPWI 
Sbjct: 64   PP----DPIQFHPLNDSVQDNLVENLENSIKFQ-VPI---------SEPRIFIQDPPWIA 109

Query: 3194 SFFMKSLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKK 3015
            S F+K ++K+  + LK+E KEI+RRKYNLLRRRQI+AETEAW+KMV           EKK
Sbjct: 110  SLFLKGMFKKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDLERVMREKK 169

Query: 3014 LAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMM 2835
            LAP+LPYVK LFLGWFEPL E                  APHI+LLPADKMA+IVMHK+M
Sbjct: 170  LAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMALIVMHKLM 229

Query: 2834 GLLMMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKK--IVAQDGLGKETEI 2661
            GL+MMG ++ C               QE+RIHSFLEKSK  QRKK  +  +DGL KE EI
Sbjct: 230  GLVMMGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADEDGLSKEKEI 289

Query: 2660 LRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSAD 2481
            LRKRV  LI+R+R+VEVQKL+K E++KPWGRD QAKLG RLIELLTETA+V  P++Q AD
Sbjct: 290  LRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLAD 349

Query: 2480 CPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPK 2301
             PPD+RPAFRH  K   K P QK+VK YGVIECDPLV  GLD+TA+HM+IPY+PMLVPPK
Sbjct: 350  GPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPK 409

Query: 2300 KWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVL 2121
            +WKGYD+GG+LFLPSY+MRTHGS+ Q   ++++  +QMQKV+EALD LG+TKWR+N++VL
Sbjct: 410  RWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVL 469

Query: 2120 SVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDT 1941
            +VVESIWA GGNIAGLVDR+DVP+PEKP S+D  EI           K+NQE HSQRCDT
Sbjct: 470  NVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDT 529

Query: 1940 ELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGL 1761
            ELKLSVAR+MKDE+ FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF+EGRPLGKSGL
Sbjct: 530  ELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL 589

Query: 1760 RWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAA 1581
            RWLKIHLANLY+GGVEKLSYD R+SFV+NH+ ++ DSA +P+NGNRWWL AEDP QCLAA
Sbjct: 590  RWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAA 649

Query: 1580 CINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYS 1401
            CINLSEAL S  PHTVISHLPIHQDGSCNGLQHYAALGRD  EAAAVNLVAG+KPADVYS
Sbjct: 650  CINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYS 709

Query: 1400 EIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIK 1221
            EIA RVH+IM++DSNKDP TNP+ALLAK+LV Q+DRKLVKQTVMTSVYGVTYVGAREQIK
Sbjct: 710  EIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIK 769

Query: 1220 RRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRW 1041
            RRLEEKG ITDDRLLF A+CYAAKVTLAALGEIFQAAR IM WLGDCAKVIASENQPVRW
Sbjct: 770  RRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRW 829

Query: 1040 TTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMM 861
            TTPLGLPVVQPY K+ERH+I+TSLQVLALQRE N V V+KQRTAFPPNFVHSLDGSHMMM
Sbjct: 830  TTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMM 889

Query: 860  TAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPAL 681
            TA+ACRDAG++FAGVHDSFWTHACDV++MN+ILRE FVELYS PILENLLESFQ +YP L
Sbjct: 890  TALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPILENLLESFQAAYPEL 949

Query: 680  TFPSLPDRGDFDLQEVIDSPYFFN 609
            TFP LP+RGDFDLQEV+ SPYFFN
Sbjct: 950  TFPPLPERGDFDLQEVLKSPYFFN 973


>ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Populus
            euphratica]
          Length = 982

 Score = 1365 bits (3532), Expect = 0.0
 Identities = 690/977 (70%), Positives = 785/977 (80%), Gaps = 6/977 (0%)
 Frame = -3

Query: 3521 PTSWRTKNAKPNQNFRKNPNTLFLLTPNIQKTLRKFPLSSSSFPYNLKLPSINTSTSIHL 3342
            PT   +K  K ++ ++   N  FL  P+       F LSSSSFP N KL  +N    +  
Sbjct: 12   PTWTTSKTLKFHEPYK---NLHFLSNPSSHSLSNPF-LSSSSFPLNPKLSILNPP--LLF 65

Query: 3341 HPLSDSTDENFVENLE--ELANLQTIPN--GFHQIAPRESIRRVFIQDPPWITSFFMKSL 3174
            HPL DS+ +  +E+ E   + N Q +     F QI   ES +RVFI+D PWI++ + K  
Sbjct: 66   HPLHDSSHDRLLEDFEIPTINNHQKLETLIKFDQIVHGESSKRVFIRDSPWISALYWKGT 125

Query: 3173 YKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVXXXXXXXXXXXEKKLAPNLPY 2994
            +K   + +KLE K+IE+RKYNLLRRRQIR ETEAW++M            E+KLAPNLPY
Sbjct: 126  HKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPY 185

Query: 2993 VKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLPADKMAVIVMHKMMGLLMMGQ 2814
            VK LFLGWFEPL E                  +P+IELLPADKMAVIVMHKMMGL+M+G 
Sbjct: 186  VKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPYIELLPADKMAVIVMHKMMGLVMVGH 245

Query: 2813 ENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIV--AQDGLGKETEILRKRVQS 2640
            E+ C               QE+RIH+FLEK+K  QRKK +   Q+ + KE E+LRKRV S
Sbjct: 246  EDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRVNS 305

Query: 2639 LIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTETAYVHSPVNQSADCPPDIRP 2460
            LI+R+R++EVQ LV  +E KPW RDKQAKLG RLIELLTETAYV  P +QS   PPD+RP
Sbjct: 306  LIRRKRLMEVQNLVIQDETKPWSRDKQAKLGSRLIELLTETAYVQPPADQSEGIPPDVRP 365

Query: 2459 AFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHMIIPYMPMLVPPKKWKGYDR 2280
            AFRH+FK V K+P QK VK+YGVIECDPL+ TGLD TA+HM+IPY PMLVPPKKW+GYD+
Sbjct: 366  AFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDK 425

Query: 2279 GGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTLGNTKWRVNRRVLSVVESIW 2100
            GG+LFLPSY+MRTHGS+ QQ AV+SVP KQMQKV+EALDTLGNTKWRVN +VL VVE IW
Sbjct: 426  GGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIW 485

Query: 2099 AGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXKINQEMHSQRCDTELKLSVA 1920
            A GGN AGLV+R D+PIPEKP SDDL EI           KINQE HSQRCDTELKLSVA
Sbjct: 486  ASGGNNAGLVNRGDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVA 545

Query: 1919 RKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLRWLKIHL 1740
            RK+KDEE FYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF+EGRPLGKSGL WLKIHL
Sbjct: 546  RKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHL 605

Query: 1739 ANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWWLMAEDPFQCLAACINLSEA 1560
            ANLY+GGVEKLS+D RL+FVENHL+E+ DSA +P+NG RWWL AEDPFQCLAACINLSEA
Sbjct: 606  ANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEA 665

Query: 1559 LKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVNLVAGDKPADVYSEIAARVH 1380
            LKS+ PHTVISHLPIHQDGSCNGLQHYAALG D  EAAAVNLVA +KP+DVYSEIAARVH
Sbjct: 666  LKSTSPHTVISHLPIHQDGSCNGLQHYAALGGDSQEAAAVNLVAAEKPSDVYSEIAARVH 725

Query: 1379 NIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG 1200
             I+ KDSNKDPATNPHALLAK+L+ +VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG
Sbjct: 726  EIIRKDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG 785

Query: 1199 HITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCAKVIASENQPVRWTTPLGLP 1020
            HITDDRLLF+A+CYAAKVTL ALGE+FQAAR IMGWLGDCAKVIASE+QPVRWTTPLGLP
Sbjct: 786  HITDDRLLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLP 845

Query: 1019 VVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPNFVHSLDGSHMMMTAIACRD 840
            VVQPY+KT+RH+I+TSLQVLALQREG+SV V+KQRTAFPPNFVHSLDGSHMMMTA+ACRD
Sbjct: 846  VVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRD 905

Query: 839  AGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILENLLESFQKSYPALTFPSLPD 660
            A L+FAGVHDSFWTHA DV+ MNRILREKFVELY+MPILENLLE FQ SYP L FPSLP+
Sbjct: 906  ADLRFAGVHDSFWTHARDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPE 965

Query: 659  RGDFDLQEVIDSPYFFN 609
            RG+FDLQEV+ SPYFFN
Sbjct: 966  RGNFDLQEVLRSPYFFN 982


>gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1360 bits (3520), Expect = 0.0
 Identities = 683/953 (71%), Positives = 777/953 (81%), Gaps = 10/953 (1%)
 Frame = -3

Query: 3443 PNIQKTLRK--FPLSSSSFPYNLKLP---SINTSTSI-HLHPLSDSTDENFVENLEELAN 3282
            P  QK  +K  F L   +FP     P   S+N  T      PL DS  +N V+N+E    
Sbjct: 19   PTSQKPHKKPLFSLPKQAFPLIFSFPIHRSLNYPTKPPRFLPLCDSLQDNIVQNIENPKK 78

Query: 3281 LQTIPNGF-HQIAPRESIRRVFIQDPPWITSFFMKSLYKRTKQGLKLEFKEIERRKYNLL 3105
            L  +PN    QI   ES  R+FIQDPPWI++ F K LYK T Q +K+E KEIE+RKYNLL
Sbjct: 79   L-LLPNAHSRQILSPESAPRIFIQDPPWISALFWKGLYKMTNQTVKIEHKEIEKRKYNLL 137

Query: 3104 RRRQIRAETEAWDKMVXXXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXX 2925
            RRRQ++ ETEAW+KMV           EKKLAPNLPYVK LFLGWFEPL E         
Sbjct: 138  RRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKVQ 197

Query: 2924 XXXXXXXXXA--PHIELLPADKMAVIVMHKMMGLLMMGQENRCXXXXXXXXXXXXXXXQE 2751
                     A  PHIELLPADK+AVIVMHKMMGL+M  +E+                 QE
Sbjct: 198  KGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVMGAEEDGYVQVVQAAVHIGVAIEQE 257

Query: 2750 IRIHSFLEKSKKCQRKKIVAQ-DGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPW 2574
            +RIHSFLEK+K  QRK+IV +  G  KE EILRKRV SLI+R+R+ EVQKLVKNEEIKPW
Sbjct: 258  VRIHSFLEKTKNYQRKQIVDEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKNEEIKPW 317

Query: 2573 GRDKQAKLGCRLIELLTETAYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYG 2394
            GRD QAKLG RL+ELLTETAYV  P++QS D P D+RPAFRH FK + + P QK+ KRYG
Sbjct: 318  GRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKKRYG 377

Query: 2393 VIECDPLVFTGLDRTARHMIIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAA 2214
            VIECDPL+ +GLD++A+HM+IPY+PMLVPPKKWKGYD+GGYLFLPSY+MRTHGS+ QQ A
Sbjct: 378  VIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEA 437

Query: 2213 VKSVPVKQMQKVYEALDTLGNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQ 2034
            +K V VK M+KV+EALDTLG+TKWRVN +VL+VVESIWA GGNIAGLVDR D+PIPEKP 
Sbjct: 438  LKGVNVKNMRKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPEKPY 497

Query: 2033 SDDLLEIXXXXXXXXXXXKINQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAY 1854
            S+D  EI           K+N+E HSQRCDTELKLSVARKM++EE FYYPHNLDFRGRAY
Sbjct: 498  SEDSTEIQEWKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAY 557

Query: 1853 PMHPHLNHLSSDLCRGVLEFSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVEN 1674
            PMHPHLNHLSSDLCRGVLEF+EGRPLG+SGL WLKIHLANLY+GGVEKLS+D RL+FV+N
Sbjct: 558  PMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAFVDN 617

Query: 1673 HLAEVLDSAHHPLNGNRWWLMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCN 1494
            HL E+ DSA +P+NGNRWWL AEDPFQCLAAC+NLSEALKS+ PH++IS+LPIHQDGSCN
Sbjct: 618  HLDEIFDSAENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDGSCN 677

Query: 1493 GLQHYAALGRDGFEAAAVNLVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKL 1314
            GLQHYAALGRD  EAAAVNLVAG+KPADVYSEIA RVHNIM++DSNKDPATNP+ALLAKL
Sbjct: 678  GLQHYAALGRDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALLAKL 737

Query: 1313 LVGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAA 1134
            L+ QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKGHITDDRLLF+A+CY AKVTLAA
Sbjct: 738  LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAA 797

Query: 1133 LGEIFQAARAIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLAL 954
            LGE+FQAAR IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY+K+ERH+I+T+LQVLAL
Sbjct: 798  LGELFQAARNIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLAL 857

Query: 953  QREGNSVVVKKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEM 774
            QREGNSV V+KQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVE+M
Sbjct: 858  QREGNSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKM 917

Query: 773  NRILREKFVELYSMPILENLLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYF 615
            N+ILREKFVELYSMP+LENLLESF+ SYP L FP LP+RG+FDLQ V+   +F
Sbjct: 918  NQILREKFVELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLQTVLACTFF 970


>ref|XP_004144791.2| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Cucumis
            sativus] gi|700205944|gb|KGN61063.1| hypothetical protein
            Csa_2G036610 [Cucumis sativus]
          Length = 975

 Score = 1359 bits (3518), Expect = 0.0
 Identities = 680/936 (72%), Positives = 765/936 (81%), Gaps = 1/936 (0%)
 Frame = -3

Query: 3413 PLSSSSFPYNLKLPSINTSTSIHLHPLSDSTDENFVENLEELANLQTIPNGFHQIAPRES 3234
            PLSS SFP N      +TS S+HL PL+DS  ENF E L+   NLQ   +  HQI   ES
Sbjct: 45   PLSSVSFPVNFD----STSQSLHLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGES 100

Query: 3233 IRRVFIQDPPWITSFFMKSLYKRTKQGLKLEFKEIERRKYNLLRRRQIRAETEAWDKMVX 3054
             +R+FIQDPPWI S F+K LYK  ++ +KLEF EIE+RKYNLLRRRQI+AETEAW+KMV 
Sbjct: 101  SKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVE 160

Query: 3053 XXXXXXXXXXEKKLAPNLPYVKKLFLGWFEPLSEXXXXXXXXXXXXXXXXXXAPHIELLP 2874
                      EKKLAPNLPYVKKLFLGWFEPL                    APHIELL 
Sbjct: 161  EYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLS 220

Query: 2873 ADKMAVIVMHKMMGLLMMGQENRCXXXXXXXXXXXXXXXQEIRIHSFLEKSKKCQRKKIV 2694
            ADKMAVIVM+KMMGLLMM  ++ C               QE+RI S LEK++  QR K+ 
Sbjct: 221  ADKMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVR 280

Query: 2693 AQ-DGLGKETEILRKRVQSLIKRQRIVEVQKLVKNEEIKPWGRDKQAKLGCRLIELLTET 2517
            A  + L KE E+LRK+V  LI+R+++ EVQKL+K EE K WGRD QAKLG RLIELL E+
Sbjct: 281  ADTECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIES 340

Query: 2516 AYVHSPVNQSADCPPDIRPAFRHLFKIVPKDPRQKVVKRYGVIECDPLVFTGLDRTARHM 2337
            A++  PV+QSAD PPDIRPAF H FK V K P Q  VK+YGV+ECDP+V  GLDRTA+HM
Sbjct: 341  AFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHM 400

Query: 2336 IIPYMPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSKHQQAAVKSVPVKQMQKVYEALDTL 2157
            +IPY+PMLVPPKKWKGYD+GG+ FLPSY+MRTHGS  QQ A+K++  KQMQKV+EALD L
Sbjct: 401  LIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDML 460

Query: 2156 GNTKWRVNRRVLSVVESIWAGGGNIAGLVDRKDVPIPEKPQSDDLLEIXXXXXXXXXXXK 1977
            G+TKWRVNR VLSVVES+WA GGN AGLVDRKDVPIPEKP  D L E+           K
Sbjct: 461  GSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGD-LTEMQEWRWSMKKAKK 519

Query: 1976 INQEMHSQRCDTELKLSVARKMKDEESFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 1797
            INQE+HSQRCD ELKLSVARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE
Sbjct: 520  INQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 579

Query: 1796 FSEGRPLGKSGLRWLKIHLANLYAGGVEKLSYDERLSFVENHLAEVLDSAHHPLNGNRWW 1617
            F+EGRPLGKSGL WLKIHLANLYAGGVEKLSYDERL+FV++HL  + DSA +P+NG+RWW
Sbjct: 580  FAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWW 639

Query: 1616 LMAEDPFQCLAACINLSEALKSSLPHTVISHLPIHQDGSCNGLQHYAALGRDGFEAAAVN 1437
            L AEDPFQCLAAC+NLSEALKSS PHTVIS+LPIHQDGSCNGLQHYAALGRD  EAAAVN
Sbjct: 640  LTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVN 699

Query: 1436 LVAGDKPADVYSEIAARVHNIMEKDSNKDPATNPHALLAKLLVGQVDRKLVKQTVMTSVY 1257
            LVAG+KPADVYSEIAARVH IM +D++KDP TNP+A LAKLL+ QVDRKLVKQTVMTSVY
Sbjct: 700  LVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVY 759

Query: 1256 GVTYVGAREQIKRRLEEKGHITDDRLLFNASCYAAKVTLAALGEIFQAARAIMGWLGDCA 1077
            GVTY+GAREQIKRRLEEKG I+DDRL F ASCYAAKVTL+ALGEIF+AAR IMGWLGDCA
Sbjct: 760  GVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCA 819

Query: 1076 KVIASENQPVRWTTPLGLPVVQPYFKTERHVIKTSLQVLALQREGNSVVVKKQRTAFPPN 897
            KVIA +NQPVRWTTPLGLPVVQPY+K+ERH+I+TSLQVLALQREGN V V+KQRTAFPPN
Sbjct: 820  KVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPN 879

Query: 896  FVHSLDGSHMMMTAIACRDAGLQFAGVHDSFWTHACDVEEMNRILREKFVELYSMPILEN 717
            FVHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDV+ MN ILREKFVELYSMP+LE+
Sbjct: 880  FVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLES 939

Query: 716  LLESFQKSYPALTFPSLPDRGDFDLQEVIDSPYFFN 609
            LLE F+ +YP LTFPSLP RGDFDLQEV+ SPYFFN
Sbjct: 940  LLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975