BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046412
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containi...   160   8e-38
emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]   160   8e-38
ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containi...   154   5e-36
ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containi...   150   8e-35
ref|XP_003588887.1| Pentatricopeptide repeat-containing protein ...   146   2e-33

>ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  160 bits (406), Expect = 8e-38
 Identities = 78/111 (70%), Positives = 87/111 (78%)
 Frame = -2

Query: 333 WTSMITAYGSHGQALEALELFHKMEQSKAKPDGVTFLAVMSACSHGGLVDHGCHYFNVMT 154
           WTSMI AYGSHGQA EAL+LF KM+QS AKPD VTFLA++SACSH GLVD GC+YFN M 
Sbjct: 478 WTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMI 537

Query: 153 NKYGIKPTLEHYSCLVDLLVRAGRLSEAYGILQSNSAIKEVVGSLSALLSA 1
            +YG KP +EHYSCL+DLL R GRL EAY ILQ    I+E VG LS L SA
Sbjct: 538 AEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSA 588


>emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  160 bits (406), Expect = 8e-38
 Identities = 78/111 (70%), Positives = 87/111 (78%)
 Frame = -2

Query: 333  WTSMITAYGSHGQALEALELFHKMEQSKAKPDGVTFLAVMSACSHGGLVDHGCHYFNVMT 154
            WTSMI AYGSHGQA EAL+LF KM+QS AKPD VTFLA++SACSH GLVD GC+YFN M 
Sbjct: 670  WTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMI 729

Query: 153  NKYGIKPTLEHYSCLVDLLVRAGRLSEAYGILQSNSAIKEVVGSLSALLSA 1
             +YG KP +EHYSCL+DLL R GRL EAY ILQ    I+E VG LS L SA
Sbjct: 730  AEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSA 780


>ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  154 bits (390), Expect = 5e-36
 Identities = 77/111 (69%), Positives = 85/111 (76%)
 Frame = -2

Query: 333 WTSMITAYGSHGQALEALELFHKMEQSKAKPDGVTFLAVMSACSHGGLVDHGCHYFNVMT 154
           WTSMITAYGSHGQA  ALELF +M QS  KPD VTFLA++SAC H GLVD GC+YFN M 
Sbjct: 478 WTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMV 537

Query: 153 NKYGIKPTLEHYSCLVDLLVRAGRLSEAYGILQSNSAIKEVVGSLSALLSA 1
           N YGI P +EHYSCL+DLL RAGRL EAY ILQ N  I++ V  LS L SA
Sbjct: 538 NVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSA 588



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/93 (30%), Positives = 50/93 (53%)
 Frame = -2

Query: 333 WTSMITAYGSHGQALEALELFHKMEQSKAKPDGVTFLAVMSACSHGGLVDHGCHYFNVMT 154
           W  MI+ Y + G+  EAL LF +M +S  +PD +TF +V++ACS    ++ G    N++ 
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLII 436

Query: 153 NKYGIKPTLEHYSCLVDLLVRAGRLSEAYGILQ 55
            K  +         L+D+  + G + EA+ + +
Sbjct: 437 EK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFK 468


>ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  150 bits (380), Expect = 8e-35
 Identities = 75/111 (67%), Positives = 83/111 (74%)
 Frame = -2

Query: 333 WTSMITAYGSHGQALEALELFHKMEQSKAKPDGVTFLAVMSACSHGGLVDHGCHYFNVMT 154
           WTSMITAYGSHG A  ALELF +M QS  KPD V FLA++SAC H GLVD GC+YFN M 
Sbjct: 478 WTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMI 537

Query: 153 NKYGIKPTLEHYSCLVDLLVRAGRLSEAYGILQSNSAIKEVVGSLSALLSA 1
           N YGI P +EHYSCL+DLL RAGRL EAY ILQ N  I++ V  LS L SA
Sbjct: 538 NVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSA 588


>ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477935|gb|AES59138.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  146 bits (368), Expect = 2e-33
 Identities = 74/111 (66%), Positives = 83/111 (74%)
 Frame = -2

Query: 333 WTSMITAYGSHGQALEALELFHKMEQSKAKPDGVTFLAVMSACSHGGLVDHGCHYFNVMT 154
           WTSMITAYGSHG+  EALELF +M QS  KPD VTFLA++SACSH GLVD G ++FN M 
Sbjct: 478 WTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMI 537

Query: 153 NKYGIKPTLEHYSCLVDLLVRAGRLSEAYGILQSNSAIKEVVGSLSALLSA 1
           N YGI P +EHYSCL+ LL RAGRL EAY ILQSN  I +    LS L SA
Sbjct: 538 NVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSA 588



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/93 (29%), Positives = 51/93 (54%)
 Frame = -2

Query: 333 WTSMITAYGSHGQALEALELFHKMEQSKAKPDGVTFLAVMSACSHGGLVDHGCHYFNVMT 154
           W  MI+ Y + G+  +AL LF +M +S  +PD +TF +V++ACS    ++ G    N++ 
Sbjct: 377 WNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIV 436

Query: 153 NKYGIKPTLEHYSCLVDLLVRAGRLSEAYGILQ 55
            +  +         L+D+  + G + EA+G+ +
Sbjct: 437 ER-NLGNNEVVMGALLDMYAKCGAVEEAFGVFK 468