BLASTX nr result
ID: Coptis25_contig00046384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00046384
(355 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 135 7e-37
emb|CBI29360.3| unnamed protein product [Vitis vinifera] 135 7e-37
emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera] 134 1e-36
ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-l... 135 1e-35
ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-l... 135 1e-35
>ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 135 bits (339), Expect(2) = 7e-37
Identities = 68/86 (79%), Positives = 74/86 (86%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S +D L+ELFS FGT+ SCKVMLDP G S G+GFVAF TPEEA RA+N MNGKMIGRKP
Sbjct: 766 SVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKP 825
Query: 183 LYVAVAQRKEERKARLQEQFAQIRAP 260
LYVAVAQRKEERKARLQ QFAQIR+P
Sbjct: 826 LYVAVAQRKEERKARLQAQFAQIRSP 851
Score = 43.9 bits (102), Expect(2) = 7e-37
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2
Query: 281 SGMPGFHPGGPRLPPPQLYFGPGGP 355
SG+PGFH G PRL P QLYFG G P
Sbjct: 859 SGVPGFHSGAPRLAPQQLYFGQGTP 883
Score = 64.7 bits (156), Expect = 8e-09
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S + L + F+ FGTV+SCK+ LD GQS G GFV F E A A+ +NG +I K
Sbjct: 571 SIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQ 630
Query: 183 LYVAVAQRKEER 218
+YV + R +ER
Sbjct: 631 VYVGLFVRHQER 642
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 DGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIG-RKPLY 188
D L+ +F ++G++ S VM D G S GFV F + + A AV +NG K Y
Sbjct: 665 DDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWY 724
Query: 189 VAVAQRKEERKARLQEQFAQIR 254
V AQRK ER+A L+ +F Q R
Sbjct: 725 VGKAQRKSEREAELRAKFEQER 746
>emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 135 bits (339), Expect(2) = 7e-37
Identities = 68/86 (79%), Positives = 74/86 (86%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S +D L+ELFS FGT+ SCKVMLDP G S G+GFVAF TPEEA RA+N MNGKMIGRKP
Sbjct: 306 SVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKP 365
Query: 183 LYVAVAQRKEERKARLQEQFAQIRAP 260
LYVAVAQRKEERKARLQ QFAQIR+P
Sbjct: 366 LYVAVAQRKEERKARLQAQFAQIRSP 391
Score = 43.9 bits (102), Expect(2) = 7e-37
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2
Query: 281 SGMPGFHPGGPRLPPPQLYFGPGGP 355
SG+PGFH G PRL P QLYFG G P
Sbjct: 399 SGVPGFHSGAPRLAPQQLYFGQGTP 423
Score = 64.7 bits (156), Expect = 8e-09
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S + L + F+ FGTV+SCK+ LD GQS G GFV F E A A+ +NG +I K
Sbjct: 111 SIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQ 170
Query: 183 LYVAVAQRKEER 218
+YV + R +ER
Sbjct: 171 VYVGLFVRHQER 182
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 DGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIG-RKPLY 188
D L+ +F ++G++ S VM D G S GFV F + + A AV +NG K Y
Sbjct: 205 DDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWY 264
Query: 189 VAVAQRKEERKARLQEQFAQIR 254
V AQRK ER+A L+ +F Q R
Sbjct: 265 VGKAQRKSEREAELRAKFEQER 286
>emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 134 bits (337), Expect(2) = 1e-36
Identities = 68/86 (79%), Positives = 73/86 (84%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S +D L ELFS FGT+ SCKVMLDP G S G+GFVAF TPEEA RA+N MNGKMIGRKP
Sbjct: 332 SVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKP 391
Query: 183 LYVAVAQRKEERKARLQEQFAQIRAP 260
LYVAVAQRKEERKARLQ QFAQIR+P
Sbjct: 392 LYVAVAQRKEERKARLQAQFAQIRSP 417
Score = 43.9 bits (102), Expect(2) = 1e-36
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2
Query: 281 SGMPGFHPGGPRLPPPQLYFGPGGP 355
SG+PGFH G PRL P QLYFG G P
Sbjct: 425 SGVPGFHSGAPRLAPQQLYFGQGTP 449
Score = 64.7 bits (156), Expect = 8e-09
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S + L + F+ FGTV+SCK+ LD GQS G GFV F E A A+ +NG +I K
Sbjct: 137 SIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQ 196
Query: 183 LYVAVAQRKEER 218
+YV + R +ER
Sbjct: 197 VYVGLFVRHQER 208
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 12 DGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIG-RKPLY 188
D L+ +F ++G++ S VM D G S GFV F + + A AV +NG K Y
Sbjct: 231 DDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWY 290
Query: 189 VAVAQRKEERKARLQEQFAQIR 254
V AQRK ER+A L+ +F Q R
Sbjct: 291 VGKAQRKSEREAELRAKFEQER 312
>ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 135 bits (339), Expect(2) = 1e-35
Identities = 66/90 (73%), Positives = 78/90 (86%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
SF D L++LFS FGT+ SCKVM+D G+S G+GFV+FSTPEEA++A+NEMNGK+IGRKP
Sbjct: 328 SFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKP 387
Query: 183 LYVAVAQRKEERKARLQEQFAQIRAPFNVA 272
LYVAVAQRKEERKA LQ QFAQIRAP +A
Sbjct: 388 LYVAVAQRKEERKAHLQAQFAQIRAPGGMA 417
Score = 39.7 bits (91), Expect(2) = 1e-35
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 281 SGMPGFHPGGPRLPPPQLYFGPGGP 355
+G+P +HPG PRL P QLY+G G P
Sbjct: 421 AGIPLYHPGAPRLAPQQLYYGQGTP 445
Score = 68.6 bits (166), Expect = 5e-10
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S + L + F+ FGTV+SCKV LD GQS G GFV F E A A+ +NG +I K
Sbjct: 133 SIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQ 192
Query: 183 LYVAVAQRKEERK 221
+YV + R++ER+
Sbjct: 193 VYVGLFIRRQERE 205
Score = 62.0 bits (149), Expect = 5e-08
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGR-K 179
++ D L++LF +GT+ S VM D G+S GFV F P+ A AV +NG I +
Sbjct: 224 TYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDR 283
Query: 180 PLYVAVAQRKEERKARLQEQFAQIR 254
LYV AQRK ER+A L+ + Q R
Sbjct: 284 VLYVGRAQRKAEREAELKAKIEQER 308
>ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 135 bits (339), Expect(2) = 1e-35
Identities = 66/90 (73%), Positives = 78/90 (86%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
SF D L++LFS FGT+ SCKVM+D G+S G+GFV+FSTPEEA++A+NEMNGK+IGRKP
Sbjct: 328 SFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKP 387
Query: 183 LYVAVAQRKEERKARLQEQFAQIRAPFNVA 272
LYVAVAQRKEERKA LQ QFAQIRAP +A
Sbjct: 388 LYVAVAQRKEERKAHLQAQFAQIRAPGGMA 417
Score = 39.7 bits (91), Expect(2) = 1e-35
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 281 SGMPGFHPGGPRLPPPQLYFGPGGP 355
+G+P +HPG PRL P QLY+G G P
Sbjct: 421 AGIPLYHPGAPRLAPQQLYYGQGTP 445
Score = 68.6 bits (166), Expect = 5e-10
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGRKP 182
S + L + F+ FGTV+SCKV LD GQS G GFV F E A A+ +NG +I K
Sbjct: 133 SIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQ 192
Query: 183 LYVAVAQRKEERK 221
+YV + R++ER+
Sbjct: 193 VYVGLFIRRQERE 205
Score = 62.0 bits (149), Expect = 5e-08
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 SFHDGTLEELFSRFGTVISCKVMLDPFGQSTGAGFVAFSTPEEANRAVNEMNGKMIGR-K 179
++ D L++LF +GT+ S VM D G+S GFV F P+ A AV +NG I +
Sbjct: 224 TYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDR 283
Query: 180 PLYVAVAQRKEERKARLQEQFAQIR 254
LYV AQRK ER+A L+ + Q R
Sbjct: 284 VLYVGRAQRKAEREAELKAKIEQER 308