BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046358
         (249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38165.3| unnamed protein product [Vitis vinifera]              129   2e-28
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...   124   6e-27
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi...   124   8e-27
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,...   123   2e-26

>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  129 bits (324), Expect = 2e-28
 Identities = 60/81 (74%), Positives = 71/81 (87%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           QIH R++K  KF+DDLVLGNALVDMYAKC ++ EARR+FD M I+NVVSETSM+SGYA+A
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328

Query: 64  TSVKAARLMFMKMTEKNVVSW 2
            SVKAAR MF KMT++NVVSW
Sbjct: 329 ASVKAARFMFSKMTQRNVVSW 349


>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  129 bits (324), Expect = 2e-28
 Identities = 60/81 (74%), Positives = 71/81 (87%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           QIH R++K  KF+DDLVLGNALVDMYAKC ++ EARR+FD M I+NVVSETSM+SGYA+A
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328

Query: 64  TSVKAARLMFMKMTEKNVVSW 2
            SVKAAR MF KMT++NVVSW
Sbjct: 329 ASVKAARFMFSKMTQRNVVSW 349


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491679|gb|AES72882.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  124 bits (312), Expect = 6e-27
 Identities = 58/81 (71%), Positives = 72/81 (88%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           QIH R++K +K+++DLVLGNALVDMYAKC R+ EAR +FD MP+++VVSETSM+SGYAKA
Sbjct: 273 QIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKA 332

Query: 64  TSVKAARLMFMKMTEKNVVSW 2
           +SVKAARLMF  M E+NVVSW
Sbjct: 333 SSVKAARLMFSNMMERNVVSW 353



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/80 (33%), Positives = 48/80 (60%)
 Frame = -3

Query: 241 IHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKAT 62
           +H R+IK + F  ++ + N LVD+Y KCG +++AR++FD M  +N  S  +++    K  
Sbjct: 41  VHARIIKTQ-FSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFG 99

Query: 61  SVKAARLMFMKMTEKNVVSW 2
           ++  A  +F  M E++  SW
Sbjct: 100 ALDEALNLFKCMPERDQCSW 119


>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  124 bits (311), Expect = 8e-27
 Identities = 58/81 (71%), Positives = 70/81 (86%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           QIH R++K +K+++DLVLGNALVDMYAKC R+ EAR +FD MP++NVVSETSM+ GYA+A
Sbjct: 273 QIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARA 332

Query: 64  TSVKAARLMFMKMTEKNVVSW 2
            SVKAARLMF  M EKNVVSW
Sbjct: 333 ASVKAARLMFSNMMEKNVVSW 353



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/81 (37%), Positives = 47/81 (58%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           +IH R+IK + F  ++ + N LVD Y KCG  ++AR++FD MP +N  S  +++S   K 
Sbjct: 40  RIHARIIKTQ-FSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKF 98

Query: 64  TSVKAARLMFMKMTEKNVVSW 2
             +  A  +F  M E +  SW
Sbjct: 99  GKLDEAFNVFKSMPEPDQCSW 119



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/78 (39%), Positives = 49/78 (62%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           QIH  +I   ++  D+ +G+ALVDMY+KCG +  A+R FDGM ++N+VS  S+I+ Y + 
Sbjct: 172 QIHA-LISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQN 230

Query: 64  TSVKAARLMFMKMTEKNV 11
                A  +F+ M +  V
Sbjct: 231 GPAGKALEVFVMMMDNGV 248


>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score =  123 bits (308), Expect = 2e-26
 Identities = 58/81 (71%), Positives = 69/81 (85%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           +IH  ++K +K +DDL+L NALVDMYAKCGRI EAR +FD MPI+NVVSETSM+SGYAK 
Sbjct: 273 EIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKT 332

Query: 64  TSVKAARLMFMKMTEKNVVSW 2
            SVKAARL+F KM E+NVVSW
Sbjct: 333 ASVKAARLLFTKMIERNVVSW 353



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/76 (43%), Positives = 52/76 (68%)
 Frame = -3

Query: 247 SQIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAK 68
           +QIH  M+K  +F  D+ +G+AL+D+Y+KCG +  A+R+FDGM  +NVVS  S+I+ Y +
Sbjct: 171 TQIHGLMLK-SQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQ 229

Query: 67  ATSVKAARLMFMKMTE 20
               + A  +FM+M E
Sbjct: 230 NGPSREALEIFMRMME 245



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 31/81 (38%), Positives = 48/81 (59%)
 Frame = -3

Query: 244 QIHTRMIKFEKFKDDLVLGNALVDMYAKCGRIKEARRIFDGMPIKNVVSETSMISGYAKA 65
           +IH R+IK + F  ++ + N L+D Y KCG   +AR+IFD MP KNV S  +++S   K+
Sbjct: 40  RIHARIIKTQ-FAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEKNVFSWNAIVSTLVKS 98

Query: 64  TSVKAARLMFMKMTEKNVVSW 2
             +     +F+ M E +  SW
Sbjct: 99  GFLDEGARLFVSMPEPDQCSW 119