BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046348
         (212 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532584.1| pentatricopeptide repeat-containing protein,...    74   2e-11
ref|XP_002888826.1| hypothetical protein ARALYDRAFT_894959 [Arab...    68   9e-10
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    67   1e-09
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi...    67   1e-09
gb|AAG51690.1|AC016972_9 hypothetical protein; 66200-63606 [Arab...    66   3e-09

>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 895

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
 Frame = -2

Query: 211 KDWFRTTREEDALLDRTLFDILADNDDLASSELELSKLGLRVNERFVLRVLNYG--RRDV 38
           K+WF+T  + +  LDR +F+IL++ D++   EL LS+LGLR+ E  VL VL+YG  ++DV
Sbjct: 80  KEWFKT--QNNGFLDR-VFEILSNQDEV--DELALSQLGLRLTESLVLDVLHYGNSKKDV 134

Query: 37  LSCLKFFDWAGR 2
           LSCLKFFDWAGR
Sbjct: 135 LSCLKFFDWAGR 146


>ref|XP_002888826.1| hypothetical protein ARALYDRAFT_894959 [Arabidopsis lyrata subsp.
           lyrata] gi|297334667|gb|EFH65085.1| hypothetical protein
           ARALYDRAFT_894959 [Arabidopsis lyrata subsp. lyrata]
          Length = 868

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
 Frame = -2

Query: 211 KDWF--RTTREEDALLDRTLFDIL---ADNDDLASSELELSKLGLRVNERFVLRVLNYGR 47
           KDWF  R  ++   L+DR +FDIL   +++ D  +  L LS L LR+ E+FVL VL + R
Sbjct: 54  KDWFKQRDVKQSHQLIDR-IFDILRAPSNDGDARAFYLHLSNLRLRLTEKFVLDVLTHTR 112

Query: 46  RDVLSCLKFFDWAGR 2
            D+LSCLKFFDWA R
Sbjct: 113 YDILSCLKFFDWAAR 127


>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71210-like, partial [Cucumis sativus]
          Length = 889

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 7/77 (9%)
 Frame = -2

Query: 211 KDWFRTTREEDALLDRTLFDILA---DNDDL----ASSELELSKLGLRVNERFVLRVLNY 53
           K+WF++       L   +F IL    D+ ++    ++++L LS+LGLR+NE FVL VL +
Sbjct: 62  KEWFKSGSNP---LYGKIFQILRGARDDQEIPYRPSAADLALSRLGLRLNESFVLDVLRF 118

Query: 52  GRRDVLSCLKFFDWAGR 2
           G +DVLSCLKFFDWAGR
Sbjct: 119 GSKDVLSCLKFFDWAGR 135


>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Cucumis sativus]
          Length = 913

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 7/77 (9%)
 Frame = -2

Query: 211 KDWFRTTREEDALLDRTLFDILA---DNDDL----ASSELELSKLGLRVNERFVLRVLNY 53
           K+WF++       L   +F IL    D+ ++    ++++L LS+LGLR+NE FVL VL +
Sbjct: 86  KEWFKSGSNP---LYGKIFQILRGARDDQEIPYRPSAADLALSRLGLRLNESFVLDVLRF 142

Query: 52  GRRDVLSCLKFFDWAGR 2
           G +DVLSCLKFFDWAGR
Sbjct: 143 GSKDVLSCLKFFDWAGR 159


>gb|AAG51690.1|AC016972_9 hypothetical protein; 66200-63606 [Arabidopsis thaliana]
          Length = 864

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
 Frame = -2

Query: 211 KDWF--RTTREEDALLDRTLFDILA----DNDDLASSELELSKLGLRVNERFVLRVLNYG 50
           KDWF  R  ++   L+DR +FDIL     D DD A   L LS L LR+ E+FVL VL++ 
Sbjct: 50  KDWFKHRDVKQSHQLIDR-IFDILRAPSNDGDDRAFY-LHLSNLRLRLTEKFVLDVLSHT 107

Query: 49  RRDVLSCLKFFDWAGR 2
           R D+L CLKFFDWA R
Sbjct: 108 RYDILCCLKFFDWAAR 123