BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046297
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containi...   138   4e-31
emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]   137   9e-31
ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containi...   125   5e-27
ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containi...   125   5e-27
ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26

>ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
           gi|302143682|emb|CBI22543.3| unnamed protein product
           [Vitis vinifera]
          Length = 728

 Score =  138 bits (348), Expect = 4e-31
 Identities = 64/95 (67%), Positives = 79/95 (83%)
 Frame = +3

Query: 3   RNELLWSIMLVGYVNRNLMKEAMDVFMKMPSRDVISWTTLISGYSRSGDECEKALEIFKL 182
           RNE+LWS+MLVGYV  N+M +A+ VF+KMP RDV++WTTLISG+S++GD C KALEIF+L
Sbjct: 162 RNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRL 221

Query: 183 MRVSGETNPNEFTFDSVLRSIGELGILKEGKIVHG 287
           M  SGET PNEFTFD V+R+ G LGIL  G+ VHG
Sbjct: 222 MMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHG 256



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 29/88 (32%), Positives = 47/88 (53%)
 Frame = +3

Query: 21  SIMLVGYVNRNLMKEAMDVFMKMPSRDVISWTTLISGYSRSGDECEKALEIFKLMRVSGE 200
           +I +  Y  ++ +  A  +F +MP R V+SW T+IS YS+ G   E    ++ + R    
Sbjct: 36  NIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR--SH 93

Query: 201 TNPNEFTFDSVLRSIGELGILKEGKIVH 284
              +E TF SVL     L  L++GK++H
Sbjct: 94  MKLSESTFSSVLSVCARLRCLRDGKLIH 121


>emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  137 bits (345), Expect = 9e-31
 Identities = 63/95 (66%), Positives = 79/95 (83%)
 Frame = +3

Query: 3   RNELLWSIMLVGYVNRNLMKEAMDVFMKMPSRDVISWTTLISGYSRSGDECEKALEIFKL 182
           RNE+LWS+MLVGYV  N+M +A+ VF+KMP RDV++WTTLISG+S++GD C KALE+F+L
Sbjct: 202 RNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRL 261

Query: 183 MRVSGETNPNEFTFDSVLRSIGELGILKEGKIVHG 287
           M  SGET PNEFTFD V+R+ G LGIL  G+ VHG
Sbjct: 262 MMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHG 296



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 29/88 (32%), Positives = 47/88 (53%)
 Frame = +3

Query: 21  SIMLVGYVNRNLMKEAMDVFMKMPSRDVISWTTLISGYSRSGDECEKALEIFKLMRVSGE 200
           +I +  Y  ++ +  A  +F +MP R V+SW T+IS YS+ G   E    ++ + R    
Sbjct: 76  NIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR--SH 133

Query: 201 TNPNEFTFDSVLRSIGELGILKEGKIVH 284
              +E TF SVL     L  L++GK++H
Sbjct: 134 MKLSESTFSSVLSVCARLRCLRDGKLIH 161


>ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  125 bits (313), Expect = 5e-27
 Identities = 54/95 (56%), Positives = 76/95 (80%)
 Frame = +3

Query: 3   RNELLWSIMLVGYVNRNLMKEAMDVFMKMPSRDVISWTTLISGYSRSGDECEKALEIFKL 182
           +N+LLW ++LVGYV  NLM +A+D+FMK+P+RDV++WTT+IS Y+RS   C++ LE+F  
Sbjct: 167 KNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCS 226

Query: 183 MRVSGETNPNEFTFDSVLRSIGELGILKEGKIVHG 287
           MR++GE  PNEFTFDSV+R+ G +  L  GK+VHG
Sbjct: 227 MRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHG 261


>ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  125 bits (313), Expect = 5e-27
 Identities = 54/95 (56%), Positives = 76/95 (80%)
 Frame = +3

Query: 3   RNELLWSIMLVGYVNRNLMKEAMDVFMKMPSRDVISWTTLISGYSRSGDECEKALEIFKL 182
           +N+LLW ++LVGYV  NLM +A+D+FMK+P+RDV++WTT+IS Y+RS   C++ LE+F  
Sbjct: 167 KNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCS 226

Query: 183 MRVSGETNPNEFTFDSVLRSIGELGILKEGKIVHG 287
           MR++GE  PNEFTFDSV+R+ G +  L  GK+VHG
Sbjct: 227 MRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHG 261


>ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  122 bits (305), Expect = 4e-26
 Identities = 54/94 (57%), Positives = 73/94 (77%)
 Frame = +3

Query: 6   NELLWSIMLVGYVNRNLMKEAMDVFMKMPSRDVISWTTLISGYSRSGDECEKALEIFKLM 185
           N++LWS+ML GYV +++M +AMD+F KMP RDV++WTTLISGY++  D CE+AL++F  M
Sbjct: 172 NQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCM 231

Query: 186 RVSGETNPNEFTFDSVLRSIGELGILKEGKIVHG 287
           R S E  PNEFT D V+R    LG+L+ GK+VHG
Sbjct: 232 RRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHG 265