BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046243
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    65   6e-09
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    65   6e-09
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    64   1e-08
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    63   3e-08
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    63   3e-08

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 35/105 (33%), Positives = 53/105 (50%)
 Frame = +2

Query: 53  NSVHDLKILRVFNLHHKLRRAPKIIECFWTLPPPGIIKVNTDGCSRGNPGRSGWGIVMRN 232
           +S+ D K+ R+F++  K  R     E  W  P  G +K+N DG   G+P     G++ R 
Sbjct: 217 SSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRA 276

Query: 233 YKVEFLGAVAGGLGVNTNYMAETVAIVEAVHKALEMGWKYIWVES 367
            +  F GA A  +G  T   AE  A + A+ KA E+    IW+E+
Sbjct: 277 SQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIET 321


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 40/111 (36%), Positives = 61/111 (54%)
 Frame = +2

Query: 35   STGHMENSVHDLKILRVFNLHHKLRRAPKIIECFWTLPPPGIIKVNTDGCSRGNPGRSGW 214
            STG   +S  D  IL  F++  + R+   II   W  P P ++KVNTDG   G  G +  
Sbjct: 983  STGKCLHS--DSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAAC 1038

Query: 215  GIVMRNYKVEFLGAVAGGLGVNTNYMAETVAIVEAVHKALEMGWKYIWVES 367
            G + R+    FLGA +  +G+ + + AET+A + A+  A   GW+ +W+ES
Sbjct: 1039 GGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLES 1089


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 32/84 (38%), Positives = 44/84 (52%)
 Frame = +2

Query: 116 PKIIECFWTLPPPGIIKVNTDGCSRGNPGRSGWGIVMRNYKVEFLGAVAGGLGVNTNYMA 295
           PKI    W  PPP  IK+N++G +RG PG +G G + RN +    G     L     ++A
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVA 61

Query: 296 ETVAIVEAVHKALEMGWKYIWVES 367
           E  A +  + KA   GW  IW+ES
Sbjct: 62  EIKAAIYGIDKAYNFGWNKIWLES 85


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/105 (32%), Positives = 58/105 (55%)
 Frame = +2

Query: 53  NSVHDLKILRVFNLHHKLRRAPKIIECFWTLPPPGIIKVNTDGCSRGNPGRSGWGIVMRN 232
           +++ D K+ ++FN+  K++R    ++  W  P   I+K+N DG S G       GIV+R+
Sbjct: 188 SAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRD 247

Query: 233 YKVEFLGAVAGGLGVNTNYMAETVAIVEAVHKALEMGWKYIWVES 367
               FLGA++  +G  T   AE  A + A+ KA EM   ++ +E+
Sbjct: 248 SNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLET 292


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/105 (32%), Positives = 58/105 (55%)
 Frame = +2

Query: 53  NSVHDLKILRVFNLHHKLRRAPKIIECFWTLPPPGIIKVNTDGCSRGNPGRSGWGIVMRN 232
           +++ D K+ ++FN+  K++R    ++  W  P   I+K+N DG S G       GIV+R+
Sbjct: 25  SAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRD 84

Query: 233 YKVEFLGAVAGGLGVNTNYMAETVAIVEAVHKALEMGWKYIWVES 367
               FLGA++  +G  T   AE  A + A+ KA EM   ++ +E+
Sbjct: 85  SNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLET 129