BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046214
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   100   9e-20
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...    92   4e-17
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    92   6e-17
emb|CAA73803.1| reverse transcriptase [Allium cepa]                    91   1e-16
gb|EEE59262.1| hypothetical protein OsJ_11281 [Oryza sativa Japo...    85   7e-15

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  100 bits (250), Expect = 9e-20
 Identities = 46/81 (56%), Positives = 62/81 (76%)
 Frame = +3

Query: 3   KVNNPTRIEDFRPIALCNTIYKCMSKVITNRLKLVINDLVYANQSAFIPGRSIQDNILLS 182
           KV + TR+++FRPIA C  IYK +SK++TNR+K +I ++V   QS FIPGR I DNILL+
Sbjct: 504 KVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLA 563

Query: 183 HEILRGYDRKHGTPHCSIKVD 245
            E++RGY RKH +P C +KVD
Sbjct: 564 SELIRGYTRKHMSPRCIMKVD 584


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 40/78 (51%), Positives = 60/78 (76%)
 Frame = +3

Query: 12  NPTRIEDFRPIALCNTIYKCMSKVITNRLKLVINDLVYANQSAFIPGRSIQDNILLSHEI 191
           N T +++FRPIA C+ IYK +SK++T+R++ V+N +V  NQSAF+ GR I DNI+LSHE+
Sbjct: 190 NVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHEL 249

Query: 192 LRGYDRKHGTPHCSIKVD 245
           ++ Y RK  +P C +K+D
Sbjct: 250 VKSYSRKGISPRCMVKID 267


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 41/81 (50%), Positives = 60/81 (74%)
 Frame = +3

Query: 3   KVNNPTRIEDFRPIALCNTIYKCMSKVITNRLKLVINDLVYANQSAFIPGRSIQDNILLS 182
           K++     +D+RPIA C+T+YK +SK++T RL+ VI ++V   Q+ FIP R I DNILL+
Sbjct: 507 KIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLA 566

Query: 183 HEILRGYDRKHGTPHCSIKVD 245
            E++RGY+R+H +P C IKVD
Sbjct: 567 TELIRGYNRRHVSPRCVIKVD 587


>emb|CAA73803.1| reverse transcriptase [Allium cepa]
          Length = 137

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 40/71 (56%), Positives = 56/71 (78%)
 Frame = +3

Query: 33  FRPIALCNTIYKCMSKVITNRLKLVINDLVYANQSAFIPGRSIQDNILLSHEILRGYDRK 212
           FRPI+ CNTIYKC+SKV+ +RLK V+  LV  NQ+A++ GR+I D++LLSHE+++GY RK
Sbjct: 3   FRPISCCNTIYKCISKVLASRLKHVLPTLVSPNQAAYLSGRNILDHVLLSHELIKGYKRK 62

Query: 213 HGTPHCSIKVD 245
             TP   +K+D
Sbjct: 63  SATPRAMLKLD 73


>gb|EEE59262.1| hypothetical protein OsJ_11281 [Oryza sativa Japonica Group]
          Length = 541

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 38/82 (46%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   KVNNPTRIEDFRPIALCNTIYKCMSKVITNRLKLVINDLVYANQSAFIPGRSIQDNILLS 182
           KV +P  +++FRPI+LCN +YK  SKV+ NRL++ +++++ A QSAF+PGR I DN+L++
Sbjct: 456 KVKHPQDLKNFRPISLCNVVYKLCSKVLANRLRVFLDEIISAEQSAFVPGRLITDNVLVA 515

Query: 183 HEILRGYDRKHG-TPHCSIKVD 245
           +E      RK G T  C++K+D
Sbjct: 516 YECTHYLKRKKGKTGACAVKLD 537