BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046165
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi...   144   6e-33
ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi...   138   5e-31
emb|CBI40338.3| unnamed protein product [Vitis vinifera]              138   5e-31
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]   138   5e-31
ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group] g...   136   2e-30

>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
           gi|449479088|ref|XP_004155501.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  144 bits (364), Expect = 6e-33
 Identities = 63/124 (50%), Positives = 85/124 (68%)
 Frame = +2

Query: 14  PSSNAVYWWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRA 193
           PS + V+WWN +I+  V  G   +    YC M  L W PD +T+PFVLKACGEI  +   
Sbjct: 87  PSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHG 146

Query: 194 VLVHSAVCRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSIVGAF 373
             VH+ VC +G  SNVF+CN++VAMY RCG LD++ ++FDEV +R I D+VSWNSI+ A+
Sbjct: 147 ASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAY 206

Query: 374 VRSG 385
           V+ G
Sbjct: 207 VQGG 210



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
 Frame = +2

Query: 38  WNQIIKADVSNGYQGNAFNLYCLM---LSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHS 208
           WN I+ A V  G    A  +   M    SL  +PD  T   +L AC  +  +     VH 
Sbjct: 199 WNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHG 258

Query: 209 AVCRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSIVGAFVRSG 385
              R+G   +VFV NALV+MYA+C +++E+ KVF+ + ++   DVVSWN++V  + + G
Sbjct: 259 FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKK---DVVSWNAMVTGYSQIG 314


>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  138 bits (347), Expect = 5e-31
 Identities = 63/128 (49%), Positives = 87/128 (67%)
 Frame = +2

Query: 2   KTIPPSSNAVYWWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQC 181
           + + PSS+ V+WWNQ+I+  V  G+  +   LY  M  L W+PD +T+PFVLKACGEI  
Sbjct: 82  RRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPS 141

Query: 182 VWRAVLVHSAVCRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSI 361
                 VH+ V  SG+E NVFV N LV+MY RCG  + + +VFDE+ +RG+ D+VSWNSI
Sbjct: 142 FRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSI 201

Query: 362 VGAFVRSG 385
           V A+++ G
Sbjct: 202 VAAYMQGG 209



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +2

Query: 38  WNQIIKADVSNGYQGNAFNLYCLMLS-LNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 214
           WN I+ A +  G    A  ++  M   L  +PD  +   VL AC  +    R   VH   
Sbjct: 198 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 257

Query: 215 CRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSIVGAFVRSG 385
            RSG   +VFV NA+V MYA+CG ++E+ KVF+ +    + DVVSWN++V  + + G
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMK---VKDVVSWNAMVTGYSQIG 311



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
 Frame = +2

Query: 8   IPPSSNAVYWWNQIIKADVSNGYQGNAFNLYCLMLSLN--WKPDGFTYPFVLKACGEIQC 181
           IPP   +V  W  +I  +  +G    A  L+  ML  +    P+ FT    L AC  +  
Sbjct: 435 IPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGA 494

Query: 182 VWRAVLVHSAVCRSGYESNV-FVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNS 358
           +     +H+ V R+ +ES + FV N L+ MY++ G++D +  VFD + QR   + VSW S
Sbjct: 495 LRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR---NGVSWTS 551

Query: 359 IVGAFVRSG 385
           ++  +   G
Sbjct: 552 LMTGYGMHG 560


>emb|CBI40338.3| unnamed protein product [Vitis vinifera]
          Length = 487

 Score =  138 bits (347), Expect = 5e-31
 Identities = 63/128 (49%), Positives = 87/128 (67%)
 Frame = +2

Query: 2   KTIPPSSNAVYWWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQC 181
           + + PSS+ V+WWNQ+I+  V  G+  +   LY  M  L W+PD +T+PFVLKACGEI  
Sbjct: 82  RRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPS 141

Query: 182 VWRAVLVHSAVCRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSI 361
                 VH+ V  SG+E NVFV N LV+MY RCG  + + +VFDE+ +RG+ D+VSWNSI
Sbjct: 142 FRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSI 201

Query: 362 VGAFVRSG 385
           V A+++ G
Sbjct: 202 VAAYMQGG 209



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +2

Query: 38  WNQIIKADVSNGYQGNAFNLYCLMLS-LNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 214
           WN I+ A +  G    A  ++  M   L  +PD  +   VL AC  +    R   VH   
Sbjct: 198 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 257

Query: 215 CRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSIVGAFVRSG 385
            RSG   +VFV NA+V MYA+CG ++E+ KVF+ +    + DVVSWN++V  + + G
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMK---VKDVVSWNAMVTGYSQIG 311


>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  138 bits (347), Expect = 5e-31
 Identities = 63/128 (49%), Positives = 87/128 (67%)
 Frame = +2

Query: 2   KTIPPSSNAVYWWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQC 181
           + + PSS+ V+WWNQ+I+  V  G+  +   LY  M  L W+PD +T+PFVLKACGEI  
Sbjct: 101 RRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPS 160

Query: 182 VWRAVLVHSAVCRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSI 361
                 VH+ V  SG+E NVFV N LV+MY RCG  + + +VFDE+ +RG+ D+VSWNSI
Sbjct: 161 FRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSI 220

Query: 362 VGAFVRSG 385
           V A+++ G
Sbjct: 221 VAAYMQGG 228



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +2

Query: 38  WNQIIKADVSNGYQGNAFNLYCLMLS-LNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 214
           WN I+ A +  G    A  ++  M   L  +PD  +   VL AC  +    R   VH   
Sbjct: 217 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 276

Query: 215 CRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSIVGAFVRSG 385
            RSG   +VFV NA+V MYA+CG ++E+ KVF+ +    + DVVSWN++V  + + G
Sbjct: 277 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMK---VKDVVSWNAMVTGYSQIG 330



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
 Frame = +2

Query: 8   IPPSSNAVYWWNQIIKADVSNGYQGNAFNLYCLMLSLN--WKPDGFTYPFVLKACGEIQC 181
           IPP   +V  W  +I  +  +G    A  L+  ML  +    P+ FT    L AC  +  
Sbjct: 454 IPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGA 513

Query: 182 VWRAVLVHSAVCRSGYESNV-FVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNS 358
           +     +H+ V R+ +ES + FV N L+ MY++ G++D +  VFD + QR   + VSW S
Sbjct: 514 LRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR---NGVSWTS 570

Query: 359 IVGAFVRSG 385
           ++  +   G
Sbjct: 571 LMTGYGMHG 579


>ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
           gi|113563830|dbj|BAF14173.1| Os04g0218100, partial
           [Oryza sativa Japonica Group]
          Length = 890

 Score =  136 bits (343), Expect = 2e-30
 Identities = 61/116 (52%), Positives = 80/116 (68%)
 Frame = +2

Query: 35  WWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 214
           WWN +I+  +  G   +A N+ C ML    +PD FT P VLKACGE+         H  +
Sbjct: 122 WWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI 181

Query: 215 CRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSIVGAFVRS 382
           C +G+ESNVF+CNALVAMY+RCG L+E+  +FDE++QRGI DV+SWNSIV A V+S
Sbjct: 182 CCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKS 237



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
 Frame = +2

Query: 38  WNQIIKADVSNGYQGNAFNLYCLMLSL------NWKPDGFTYPFVLKACGEIQCVWRAVL 199
           WN I+ A V +     A +L+  M  +      N + D  +   +L ACG ++ V +   
Sbjct: 227 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 286

Query: 200 VHSAVCRSGYESNVFVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWNSIVGAFVR 379
           VH    R+G   +VFV NAL+  YA+CG ++ +VKVF+ +      DVVSWN++V  + +
Sbjct: 287 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME---FKDVVSWNAMVAGYSQ 343

Query: 380 SG 385
           SG
Sbjct: 344 SG 345



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
 Frame = +2

Query: 8   IPPSSNAVYWWNQIIKADVSNGYQGNAFNLYCLMLSLNW--KPDGFTYPFVLKACGEIQC 181
           IP     V  W  +I      G   +A  L+  M+S  +   P+ +T   +L AC  +  
Sbjct: 472 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 531

Query: 182 VWRAVLVHSAVCRSG-YESNV-FVCNALVAMYARCGELDESVKVFDEVSQRGISDVVSWN 355
           +     +H+ V R   YES+  FV N L+ MY++CG++D +  VFD +SQ+     +SW 
Sbjct: 532 IRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK---SAISWT 588

Query: 356 SIVGAFVRSG 385
           S++  +   G
Sbjct: 589 SMMTGYGMHG 598