BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046159
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
emb|CBI24015.3| unnamed protein product [Vitis vinifera]               71   8e-11
ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containi...    69   4e-10
ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-08
ref|XP_002519323.1| pentatricopeptide repeat-containing protein,...    62   4e-08

>ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 39/66 (59%), Positives = 57/66 (86%)
 Frame = +3

Query: 54  HRPVSQNIESCSTISDIKQFHAKFIKLGLTTDNDAMGRLIKFCAVSKSGDLNYALKIFNK 233
           H+     ++SCST++++KQ+H++ I+LGL+ DNDAMGR+IKFCA+SKSGDLNYAL++F+K
Sbjct: 20  HKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDK 79

Query: 234 MTQPDA 251
           +  PDA
Sbjct: 80  IPHPDA 85


>emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 30/55 (54%), Positives = 45/55 (81%)
 Frame = +3

Query: 54  HRPVSQNIESCSTISDIKQFHAKFIKLGLTTDNDAMGRLIKFCAVSKSGDLNYAL 218
           H+     ++SCST++++KQ+H++ I+LGL+ DNDAMGR+IKFCA+SKSG L + L
Sbjct: 20  HKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGYLRWQL 74


>ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 27/56 (48%), Positives = 44/56 (78%)
 Frame = +3

Query: 81  SCSTISDIKQFHAKFIKLGLTTDNDAMGRLIKFCAVSKSGDLNYALKIFNKMTQPD 248
           +CS+++++KQ H+  ++LGL+T+N AM R+  FC++SK GD+NYALK+F  +  PD
Sbjct: 11  ACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPD 66


>ref|XP_004148060.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 471

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/65 (40%), Positives = 45/65 (69%)
 Frame = +3

Query: 54  HRPVSQNIESCSTISDIKQFHAKFIKLGLTTDNDAMGRLIKFCAVSKSGDLNYALKIFNK 233
           H+ +  ++E CS++ ++K  HA+ I  GL + N  +G+LI FC+VS+ GDL+YA  +F+ 
Sbjct: 44  HQSLDFSLEKCSSMRELKVLHARIILQGLVSQNITLGKLISFCSVSQVGDLHYAHLVFDH 103

Query: 234 MTQPD 248
           + QP+
Sbjct: 104 LPQPN 108


>ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541638|gb|EEF43187.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 396

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/57 (45%), Positives = 42/57 (73%)
 Frame = +3

Query: 81  SCSTISDIKQFHAKFIKLGLTTDNDAMGRLIKFCAVSKSGDLNYALKIFNKMTQPDA 251
           +CST+ D++Q+H++ I+LGL+ D   M +LI F A+S + DL YA+K+F+ +  PDA
Sbjct: 53  NCSTMPDLRQYHSQIIRLGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDA 109