BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046148
         (256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32
ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32
ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|2...   140   1e-31
ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
emb|CBI16054.3| unnamed protein product [Vitis vinifera]              134   6e-30

>ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/84 (77%), Positives = 79/84 (94%)
 Frame = -2

Query: 255 LEARKLEKVPGCSWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVV 76
           LEAR L+K+PGCSWIEVKRK+YSFVS+DE NPQ+E++HALLV+LS+EMK +GY+P+T VV
Sbjct: 515 LEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVV 574

Query: 75  LYDLDQVEKERILLGHSEKLAVAF 4
           LYDLD+ EKERI+LGHSEKLAVAF
Sbjct: 575 LYDLDEEEKERIVLGHSEKLAVAF 598


>ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  141 bits (355), Expect = 6e-32
 Identities = 65/84 (77%), Positives = 79/84 (94%)
 Frame = -2

Query: 255 LEARKLEKVPGCSWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVV 76
           LEAR L+K+PGCSWIEVKRK+YSFVS+DE NPQ+E++HALLV+LS+EMK +GY+P+T VV
Sbjct: 515 LEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVV 574

Query: 75  LYDLDQVEKERILLGHSEKLAVAF 4
           LYDLD+ EKERI+LGHSEKLAVAF
Sbjct: 575 LYDLDEEEKERIVLGHSEKLAVAF 598


>ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1|
           predicted protein [Populus trichocarpa]
          Length = 650

 Score =  140 bits (353), Expect = 1e-31
 Identities = 68/84 (80%), Positives = 78/84 (92%)
 Frame = -2

Query: 255 LEARKLEKVPGCSWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVV 76
           LEAR L+KVPG SWIEVKRKIYSFVS+DE+NP+MEQLHALLV+LS E+KE+GY+P+TKVV
Sbjct: 507 LEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVV 566

Query: 75  LYDLDQVEKERILLGHSEKLAVAF 4
           LYDL   EKERI+LGHSEKLAVAF
Sbjct: 567 LYDLKAAEKERIVLGHSEKLAVAF 590


>ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449474033|ref|XP_004154055.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449510921|ref|XP_004163811.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  136 bits (343), Expect = 2e-30
 Identities = 65/84 (77%), Positives = 77/84 (91%)
 Frame = -2

Query: 255 LEARKLEKVPGCSWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVV 76
           L++R+L+KVPG SWIEV+RKIYSF S+DE NPQ EQLHALLV LS+EMK++GY P+TK+V
Sbjct: 506 LDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLV 565

Query: 75  LYDLDQVEKERILLGHSEKLAVAF 4
           LYDLDQ EKERI+LGHSEKLAVAF
Sbjct: 566 LYDLDQEEKERIVLGHSEKLAVAF 589


>emb|CBI16054.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  134 bits (338), Expect = 6e-30
 Identities = 65/84 (77%), Positives = 77/84 (91%)
 Frame = -2

Query: 255 LEARKLEKVPGCSWIEVKRKIYSFVSIDEMNPQMEQLHALLVRLSSEMKEKGYIPETKVV 76
           LEAR L+KVPG S IE++RKIYSF+S+DE NPQ+EQLHALL++LS EMKEKGY+P+TKVV
Sbjct: 325 LEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVV 384

Query: 75  LYDLDQVEKERILLGHSEKLAVAF 4
           LYDLD  EKERI+LGHSEKLA+AF
Sbjct: 385 LYDLDPEEKERIVLGHSEKLALAF 408