BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046067
         (256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    83   2e-14
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi...    83   2e-14
ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containi...    76   3e-12
ref|XP_003596872.1| Pentatricopeptide repeat-containing protein ...    74   1e-11
gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]    74   1e-11

>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 47/97 (48%), Positives = 55/97 (56%), Gaps = 16/97 (16%)
 Frame = -2

Query: 243 STTQLP-----QLPTSNPNTVNKSRL-----------LIQRKLDQTVSWTCSITHYCKKG 112
           S  QLP      +P SNP  +N  R                 +D  V WT S+  YC+ G
Sbjct: 12  SQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYCRNG 71

Query: 111 MLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSK 1
            LSEAA+EFTRMRLAG EPN ITF+TLLS CA FPS+
Sbjct: 72  QLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108


>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 47/97 (48%), Positives = 55/97 (56%), Gaps = 16/97 (16%)
 Frame = -2

Query: 243 STTQLP-----QLPTSNPNTVNKSRL-----------LIQRKLDQTVSWTCSITHYCKKG 112
           S  QLP      +P SNP  +N  R                 +D  V WT S+  YC+ G
Sbjct: 12  SQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYCRNG 71

Query: 111 MLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSK 1
            LSEAA+EFTRMRLAG EPN ITF+TLLS CA FPS+
Sbjct: 72  QLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108


>ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 46/102 (45%), Positives = 56/102 (54%), Gaps = 19/102 (18%)
 Frame = -2

Query: 249 CSST-TQLPQLPTS---------------NPNTVNKSRLLIQRKL---DQTVSWTCSITH 127
           C++T TQLP  P S               N NT     L ++      D  VSWT SI  
Sbjct: 6   CNATPTQLPHPPKSPSSNSLPNQTHSTFSNTNTNTNQGLSLRHTTKYNDPIVSWTTSIAD 65

Query: 126 YCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSK 1
           YCK G L +AAS+F +MR A  EPN ITF+TLLS CAH+PS+
Sbjct: 66  YCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSR 107


>ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240903|gb|ABD32761.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485920|gb|AES67123.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 38/73 (52%), Positives = 46/73 (63%)
 Frame = -2

Query: 219 PTSNPNTVNKSRLLIQRKLDQTVSWTCSITHYCKKGMLSEAASEFTRMRLAGNEPNDITF 40
           P +NPN      L  +   +QTVSWT SI+H+CK     +AASEF +M  A  EPN IT 
Sbjct: 31  PPNNPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITL 90

Query: 39  VTLLSGCAHFPSK 1
           +TLLS CAH PSK
Sbjct: 91  ITLLSACAHSPSK 103


>gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 497

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 38/73 (52%), Positives = 46/73 (63%)
 Frame = -2

Query: 219 PTSNPNTVNKSRLLIQRKLDQTVSWTCSITHYCKKGMLSEAASEFTRMRLAGNEPNDITF 40
           P +NPN      L  +   +QTVSWT SI+H+CK     +AASEF +M  A  EPN IT 
Sbjct: 31  PPNNPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITL 90

Query: 39  VTLLSGCAHFPSK 1
           +TLLS CAH PSK
Sbjct: 91  ITLLSACAHSPSK 103