BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00046058
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...    92   4e-17
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    88   6e-16
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                88   8e-16
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    87   1e-15
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...    87   1e-15

>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 977

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 41/83 (49%), Positives = 56/83 (67%)
 Frame = +2

Query: 14  FYKCTWKIIGEDFIRAAKNFFQSNQMLKEVNSTCITLIPKVLIPTSLGDYRPIACCGVMY 193
           FYK TW IIGE+F+ A K+FF+   + K VNST + LIPK L    + DYRPI+CC V+Y
Sbjct: 595 FYKATWDIIGEEFVLAIKSFFEKGFLPKGVNSTILALIPKKLEEIEMKDYRPISCCNVIY 654

Query: 194 KCITKVMTKRMKDYMPKVVNSNQ 262
           K I+K++  R+K  +P  +  NQ
Sbjct: 655 KVISKIIANRLKRLLPNFIAGNQ 677


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 39/87 (44%), Positives = 57/87 (65%)
 Frame = +2

Query: 2    FSSFFYKCTWKIIGEDFIRAAKNFFQSNQMLKEVNSTCITLIPKVLIPTSLGDYRPIACC 181
            ++S FYK  W IIG +F+ A K+FF+   + K VN+T + LIPK L    + DYRPI+CC
Sbjct: 891  YTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCC 950

Query: 182  GVMYKCITKVMTKRMKDYMPKVVNSNQ 262
             V+YK I+K++  R+K  +P  +  NQ
Sbjct: 951  NVIYKVISKIIANRLKHVLPNFIAGNQ 977


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 38/87 (43%), Positives = 57/87 (65%)
 Frame = +2

Query: 2   FSSFFYKCTWKIIGEDFIRAAKNFFQSNQMLKEVNSTCITLIPKVLIPTSLGDYRPIACC 181
           ++S FYK TW IIG++F    ++FFQ   + K +NS  + LIPK L    + DYRPI+CC
Sbjct: 123 YTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCC 182

Query: 182 GVMYKCITKVMTKRMKDYMPKVVNSNQ 262
            V+YK I+K++  R+K  +P+ +  NQ
Sbjct: 183 NVLYKVISKIIANRLKLLLPRFIAENQ 209


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 38/87 (43%), Positives = 58/87 (66%)
 Frame = +2

Query: 2   FSSFFYKCTWKIIGEDFIRAAKNFFQSNQMLKEVNSTCITLIPKVLIPTSLGDYRPIACC 181
           ++S F+K TW+IIG++F  A ++FF    + K +NST + LIPK      + DYRPI+CC
Sbjct: 476 YTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCC 535

Query: 182 GVMYKCITKVMTKRMKDYMPKVVNSNQ 262
            V+YK I+K++  R+K  +PK +  NQ
Sbjct: 536 NVLYKVISKIIANRLKLVLPKFIAGNQ 562


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 39/87 (44%), Positives = 61/87 (70%)
 Frame = +2

Query: 2   FSSFFYKCTWKIIGEDFIRAAKNFFQSNQMLKEVNSTCITLIPKVLIPTSLGDYRPIACC 181
           ++  F+KC+W IIG+  I A  +FF++  M K +N T +TL+PK +  TS+ ++RPIACC
Sbjct: 144 YNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACC 203

Query: 182 GVMYKCITKVMTKRMKDYMPKVVNSNQ 262
            V+YK I+K++T RM+  +  VV+ NQ
Sbjct: 204 SVIYKIISKILTSRMQGVLNSVVSENQ 230