BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045451
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...   192   2e-47
ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containi...   189   3e-46
ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containi...   186   2e-45
ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata] gi...   181   4e-44
ref|NP_187576.1| pentatricopeptide repeat-containing protein [Ar...   180   9e-44

>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  192 bits (488), Expect = 2e-47
 Identities = 95/114 (83%), Positives = 101/114 (88%), Gaps = 2/114 (1%)
 Frame = +1

Query: 1   IKERLKGGEEG--IPPSVPPLKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNK 174
           +KER    EEG     S PPLKPD GLLDTLAD+CVR+AFF+KALEI ACMEENGI PNK
Sbjct: 622 VKERCVVKEEGEISKSSPPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNK 681

Query: 175 TKYTRIYVEMHSRMFTSKHASRARQDRRSERKRAAEAFKFWLGLPNSYYGSEWR 336
           +KYTRIYVEMHSRMFTSKHAS+ARQDRRSERKRAAEAFKFWLGLPNSYYGSEWR
Sbjct: 682 SKYTRIYVEMHSRMFTSKHASKARQDRRSERKRAAEAFKFWLGLPNSYYGSEWR 735


>ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Glycine max]
          Length = 716

 Score =  189 bits (479), Expect = 3e-46
 Identities = 94/115 (81%), Positives = 102/115 (88%), Gaps = 3/115 (2%)
 Frame = +1

Query: 1   IKERLKGGEEG--IPPSVPPLKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNK 174
           +KER + G+EG     SVPPLKPD  LLDT+AD+CVR+AFF+KALEI ACMEENGI PNK
Sbjct: 588 VKERCEVGKEGGKSDSSVPPLKPDGALLDTIADICVRAAFFRKALEIVACMEENGIPPNK 647

Query: 175 TKYTRIYVEMHSRMFTSKHASRARQDRRSERKRAAEAFKFWLGLPNSYY-GSEWR 336
           TK+TRIYVEMHSRMFTSKHASRARQDRR ERKRAAEAFKFWLGLPNSYY GSEWR
Sbjct: 648 TKFTRIYVEMHSRMFTSKHASRARQDRRVERKRAAEAFKFWLGLPNSYYDGSEWR 702


>ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
           gi|449483612|ref|XP_004156638.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
          Length = 736

 Score =  186 bits (471), Expect = 2e-45
 Identities = 90/113 (79%), Positives = 100/113 (88%), Gaps = 2/113 (1%)
 Frame = +1

Query: 1   IKER--LKGGEEGIPPSVPPLKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNK 174
           +KER  ++ G +    S PPLKPD GLLDTLAD+CVR+AFF+KALEI ACMEENGI PNK
Sbjct: 615 VKERCAVRRGYKSDSSSPPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNK 674

Query: 175 TKYTRIYVEMHSRMFTSKHASRARQDRRSERKRAAEAFKFWLGLPNSYYGSEW 333
           TKY+RIYVEMHSRMFTSKHAS+ARQDRR E+KRAAEAFKFWLGLPNSYYGSEW
Sbjct: 675 TKYSRIYVEMHSRMFTSKHASKARQDRRIEKKRAAEAFKFWLGLPNSYYGSEW 727


>ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
           gi|297328472|gb|EFH58891.1| HCF152 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 772

 Score =  181 bits (460), Expect = 4e-44
 Identities = 87/112 (77%), Positives = 96/112 (85%)
 Frame = +1

Query: 1   IKERLKGGEEGIPPSVPPLKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNKTK 180
           +K++    +    PS P LKPD GLLDTLAD+CVR+AFFKKALEI ACMEENGI PNKTK
Sbjct: 655 VKKKEAPSDSSSDPSPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTK 714

Query: 181 YTRIYVEMHSRMFTSKHASRARQDRRSERKRAAEAFKFWLGLPNSYYGSEWR 336
           Y +IYVEMHSRMFTSKHAS+AR DRR ERKRAAEAFKFWLGLPNSYYGSEW+
Sbjct: 715 YKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWK 766


>ref|NP_187576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g09650, chloroplastic; AltName: Full=Protein HIGH
           CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor
           gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical
           protein [Arabidopsis thaliana]
           gi|332641272|gb|AEE74793.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 778

 Score =  180 bits (457), Expect = 9e-44
 Identities = 86/112 (76%), Positives = 96/112 (85%)
 Frame = +1

Query: 1   IKERLKGGEEGIPPSVPPLKPDAGLLDTLADVCVRSAFFKKALEIGACMEENGISPNKTK 180
           +K++    +    P+ P LKPD GLLDTLAD+CVR+AFFKKALEI ACMEENGI PNKTK
Sbjct: 661 VKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTK 720

Query: 181 YTRIYVEMHSRMFTSKHASRARQDRRSERKRAAEAFKFWLGLPNSYYGSEWR 336
           Y +IYVEMHSRMFTSKHAS+AR DRR ERKRAAEAFKFWLGLPNSYYGSEW+
Sbjct: 721 YKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWK 772