BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045420
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi...   200   9e-50
emb|CBI40853.3| unnamed protein product [Vitis vinifera]              196   2e-48
ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago t...   192   2e-47
ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containi...   190   1e-46
gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygr...   172   2e-41

>ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein At5g65570-like
            [Vitis vinifera]
          Length = 751

 Score =  200 bits (509), Expect = 9e-50
 Identities = 93/138 (67%), Positives = 110/138 (79%)
 Frame = +2

Query: 2    KAPAMSWIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEK 181
            K PAMSW++V++E+ TFMAGD SHP   +I E+LE L E++K LGYVPDT FVLQDL+E+
Sbjct: 614  KNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEE 673

Query: 182  EKER*LNYHSEKLAIAFGLLNSRNKTAFIRIFKNLRVCGDCHTWIKYVSKAVGREIIARD 361
            +K R L YHSEKLA+AF L  S  K   IRI KNLRVCGDCHTW+K+VSK VGR+IIARD
Sbjct: 674  KKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARD 733

Query: 362  AKRFHHLREGMCSFGDYW 415
             KRFHH R G+CS GDYW
Sbjct: 734  VKRFHHFRNGLCSCGDYW 751


>emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  196 bits (498), Expect = 2e-48
 Identities = 92/137 (67%), Positives = 109/137 (79%)
 Frame = +2

Query: 2   KAPAMSWIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEK 181
           K PAMSW++V++E+ TFMAGD SHP   +I E+LE L E++K LGYVPDT FVLQDL+E+
Sbjct: 583 KNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEE 642

Query: 182 EKER*LNYHSEKLAIAFGLLNSRNKTAFIRIFKNLRVCGDCHTWIKYVSKAVGREIIARD 361
           +K R L YHSEKLA+AF L  S  K   IRI KNLRVCGDCHTW+K+VSK VGR+IIARD
Sbjct: 643 KKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARD 702

Query: 362 AKRFHHLREGMCSFGDY 412
            KRFHH R G+CS GDY
Sbjct: 703 VKRFHHFRNGLCSCGDY 719


>ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355514334|gb|AES95957.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 676

 Score =  192 bits (489), Expect = 2e-47
 Identities = 92/138 (66%), Positives = 106/138 (76%)
 Frame = +2

Query: 2   KAPAMSWIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEK 181
           K PAMSW+++D+EV TFMAGDLSHPRA EI E L  L E++  LGY PDT FVLQDL E+
Sbjct: 539 KTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEE 598

Query: 182 EKER*LNYHSEKLAIAFGLLNSRNKTAFIRIFKNLRVCGDCHTWIKYVSKAVGREIIARD 361
           +K   L YHSEKLAIAF L  +  K   IRIFKNLRVCGDCH+WIK+VS   GR+IIARD
Sbjct: 599 KKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARD 658

Query: 362 AKRFHHLREGMCSFGDYW 415
           AKRFHH + G+CS  DYW
Sbjct: 659 AKRFHHFKGGICSCKDYW 676


>ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  190 bits (482), Expect = 1e-46
 Identities = 89/138 (64%), Positives = 110/138 (79%)
 Frame = +2

Query: 2   KAPAMSWIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEK 181
           K+PAMSW++VD+EV TFMAGDLSHPR+ EI E L  L +++K LGY P+T FVLQDL+E+
Sbjct: 539 KSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEE 598

Query: 182 EKER*LNYHSEKLAIAFGLLNSRNKTAFIRIFKNLRVCGDCHTWIKYVSKAVGREIIARD 361
           +K   L YHSEKLAIA+ L  +  +T  IRIFKNLRVCGDCH+WIK+VS   GR+IIARD
Sbjct: 599 KKISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARD 658

Query: 362 AKRFHHLREGMCSFGDYW 415
           +KRFHH + G+CS  DYW
Sbjct: 659 SKRFHHFKGGLCSCKDYW 676


>gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  172 bits (437), Expect = 2e-41
 Identities = 85/138 (61%), Positives = 105/138 (76%)
 Frame = +2

Query: 2    KAPAMSWIEVDKEVETFMAGDLSHPRATEIDEELERLSERIKVLGYVPDTGFVLQDLNEK 181
            K P  SWIEV  EV +F+AGD SHPR  EI  ELE L+++IK LGYVPDT FV+ DL+++
Sbjct: 684  KEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQE 743

Query: 182  EKER*LNYHSEKLAIAFGLLNSRNKTAFIRIFKNLRVCGDCHTWIKYVSKAVGREIIARD 361
             KER + +HSEKLAIA+GL+++  +T  IR+ KNLRVC DCHT  K++SK  GREIIARD
Sbjct: 744  GKERAVCHHSEKLAIAYGLISTPPETP-IRVSKNLRVCTDCHTATKFISKITGREIIARD 802

Query: 362  AKRFHHLREGMCSFGDYW 415
            A RFHH + G CS GDYW
Sbjct: 803  AHRFHHFKNGECSCGDYW 820