BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045415
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   102   3e-20
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    94   9e-18
ref|XP_002447837.1| hypothetical protein SORBIDRAFT_06g016627 [S...    92   6e-17
ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein A...    91   1e-16
ref|XP_002447028.1| hypothetical protein SORBIDRAFT_06g027160 [S...    91   1e-16

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  102 bits (254), Expect = 3e-20
 Identities = 45/113 (39%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
 Frame = +2

Query: 71  KWVFPEKYLGVPLIEGRVTRAVLTPLLDRIKKRITGWRGRLLTFQGKRVFMNSVLSSIPV 250
           K  FP  YLGVP+ +G+     L P++D+IK +++ W+  +L+  G+   + SV  S+ +
Sbjct: 395 KGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLI 454

Query: 251 YNMGVYKWQSSIIKEAKCIMRNFLWTGNPATNKLVIVSWEKVCKP--QGGLGI 403
           + + +Y W S ++KE +   RNF+W+G+    KLV V+W+K+CKP  QGGLGI
Sbjct: 455 HTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGI 507


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = +2

Query: 86   EKYLGVPLIEGRVTRAVLTPLLDRIKKRITGWRGRLLTFQGKRVFMNSVLSSIPVYNMGV 265
            +KYLG+P + GR  + +   LLDR+ K++ GW+ +LL+  GK V + +V+ ++P Y MGV
Sbjct: 755  QKYLGIPALCGRSKKVLFRELLDRMWKKLRGWKEKLLSRAGKEVLIKAVIQALPTYLMGV 814

Query: 266  YKWQSSIIKEAKCIMRNFLWTGNPATNKLVIVSWEKVCKPQ--GGLG 400
            YK   ++I+E    M  F W G     K+  +SWEK+CKP+  GG+G
Sbjct: 815  YKLPVAVIQEIHSAMARFWWGGKGDERKMHWLSWEKMCKPKCMGGMG 861


>ref|XP_002447837.1| hypothetical protein SORBIDRAFT_06g016627 [Sorghum bicolor]
           gi|241939020|gb|EES12165.1| hypothetical protein
           SORBIDRAFT_06g016627 [Sorghum bicolor]
          Length = 448

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 50/111 (45%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
 Frame = +2

Query: 80  FPEKYLGVPLIEGRVTRAVLTPLLDRIKKRITGWRGRLLTFQGKRVFMNSVLSSIPVYNM 259
           FP KYLG+PL  GR+  A L  ++DR K ++ GW+GRL+   G+R  + SVLSS+PVY M
Sbjct: 7   FPVKYLGLPLTLGRLRMAHLQYIIDRAKGKVAGWQGRLVNVAGRRELVRSVLSSLPVYLM 66

Query: 260 GVYKWQSSIIKEAKCIMRNFLWTG-NPATNKLVIVSWEKVCKP--QGGLGI 403
            V K   + ++E   + R FLW G +  T     V W KVC P   GG GI
Sbjct: 67  TVIKPPKNFLRELDKLRRRFLWAGDHELTGGKCKVGWFKVCTPTVNGGQGI 117


>ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 549

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
 Frame = +2

Query: 80  FPEKYLGVPLIEGRVTRAVLTPLLDRIKKRITGWRGRLLTFQGKRVFMNSVLSSIPVYNM 259
           FP  YLG+P+        +  PL+++ ++++ GW+ R L+F G+ + +NSVL+SIP+Y +
Sbjct: 153 FPFTYLGIPIGANPRRCQMWEPLINKCERKLAGWKQRHLSFGGRVILINSVLTSIPIYFL 212

Query: 260 GVYKWQSSIIKEAKCIMRNFLWTGNPATNKLVIVSWEKVCKP--QGGLGI 403
             ++    +I +   + RNFLW G    NK+  + WEKVC P  QGGLG+
Sbjct: 213 SFFRVPRQVISKITRLQRNFLWGGAADQNKIPWIKWEKVCLPKEQGGLGV 262


>ref|XP_002447028.1| hypothetical protein SORBIDRAFT_06g027160 [Sorghum bicolor]
            gi|241938211|gb|EES11356.1| hypothetical protein
            SORBIDRAFT_06g027160 [Sorghum bicolor]
          Length = 1400

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 50/111 (45%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
 Frame = +2

Query: 80   FPEKYLGVPLIEGRVTRAVLTPLLDRIKKRITGWRGRLLTFQGKRVFMNSVLSSIPVYNM 259
            FP KYLG+PL  GR+  A L  ++DR K ++ GW+ RL+   G+R  + SVLSS+PVY M
Sbjct: 956  FPVKYLGLPLTLGRLRMAHLQYIIDRAKGKVAGWQRRLVNVAGRRELVRSVLSSLPVYLM 1015

Query: 260  GVYKWQSSIIKEAKCIMRNFLWTG-NPATNKLVIVSWEKVCKP--QGGLGI 403
             V K   + ++E   + R FLW G +  T     V W KVC P   GGLGI
Sbjct: 1016 TVIKPPKNFLRELDKLRRRFLWAGDHELTGGKCKVGWFKVCTPTVNGGLGI 1066