BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045391
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat...    54   3e-15
emb|CBI18084.3| unnamed protein product [Vitis vinifera]               53   9e-15
ref|XP_002526706.1| pentatricopeptide repeat-containing protein,...    51   7e-14
ref|XP_003610748.1| Pentatricopeptide repeat-containing protein ...    56   2e-13
ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containi...    57   5e-13

>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score = 53.5 bits (127), Expect(2) = 3e-15
 Identities = 23/45 (51%), Positives = 31/45 (68%)
 Frame = +1

Query: 124 DCDVFIQTSLVNFYASCGSVQIARLLFDRCLQRDVTSWNALIKGY 258
           DCDVF++TSLV  YA CG ++ A  +FD    ++V SW A+I GY
Sbjct: 144 DCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGY 188



 Score = 52.8 bits (125), Expect(2) = 3e-15
 Identities = 21/36 (58%), Positives = 30/36 (83%)
 Frame = +3

Query: 3   REKGYSPNNYTFPFLLKACNQLMDLNLGLGIHGIVI 110
           R +G+ PNN+TFPF+LKAC +L+DL LG+ IH +V+
Sbjct: 104 RSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139



 Score = 52.0 bits (123), Expect(2) = 3e-08
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = +1

Query: 130 DVFIQTSLVNFYASCGSVQIARLLFDRCLQRDVTSWNALIKGY 258
           +VF+ TSLV+ YA CG+++ AR +FD   ++D+ SW A+I+GY
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGY 289



 Score = 30.8 bits (68), Expect(2) = 3e-08
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 6   EKGYSPNNYTFPFLLKACNQLMDLNLGLGIHGIVI 110
           E   +P+++T   +L AC QL DLN G  IH  ++
Sbjct: 206 EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIM 240


>emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score = 52.8 bits (125), Expect(2) = 9e-15
 Identities = 21/36 (58%), Positives = 30/36 (83%)
 Frame = +3

Query: 3   REKGYSPNNYTFPFLLKACNQLMDLNLGLGIHGIVI 110
           R +G+ PNN+TFPF+LKAC +L+DL LG+ IH +V+
Sbjct: 104 RSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139



 Score = 52.0 bits (123), Expect(2) = 9e-15
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = +1

Query: 130 DVFIQTSLVNFYASCGSVQIARLLFDRCLQRDVTSWNALIKGY 258
           +VF+ TSLV+ YA CG+++ AR +FD   ++D+ SW A+I+GY
Sbjct: 155 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGY 197


>ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534006|gb|EEF35728.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 461

 Score = 51.2 bits (121), Expect(2) = 7e-14
 Identities = 19/36 (52%), Positives = 30/36 (83%)
 Frame = +3

Query: 3   REKGYSPNNYTFPFLLKACNQLMDLNLGLGIHGIVI 110
           R+KG+ PNN+TFPF++KAC +L+D  LG+ +H +V+
Sbjct: 106 RKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVV 141



 Score = 50.4 bits (119), Expect(2) = 7e-14
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +1

Query: 124 DCDVFIQTSLVNFYASCGSVQIARLLFDRCLQRDVTSWNALIKGY 258
           DC++F+ TSLV+ YA CGS+  A  + D   + ++ SW A+I GY
Sbjct: 146 DCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGY 190


>ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512083|gb|AES93706.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 828

 Score = 56.2 bits (134), Expect(2) = 2e-13
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +1

Query: 130 DVFIQTSLVNFYASCGSVQIARLLFDRCLQRDVTSWNALIKGY 258
           D+F+  SL++FYA+CG V + R +FD  L+R+V SW +LI GY
Sbjct: 156 DLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGY 198



 Score = 43.9 bits (102), Expect(2) = 2e-13
 Identities = 16/33 (48%), Positives = 26/33 (78%)
 Frame = +3

Query: 12  GYSPNNYTFPFLLKACNQLMDLNLGLGIHGIVI 110
           G  P+N+TFPFLL AC+++M  + G+ +HG+V+
Sbjct: 117 GIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVV 149


>ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score = 57.4 bits (137), Expect(2) = 5e-13
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +1

Query: 130 DVFIQTSLVNFYASCGSVQIARLLFDRCLQRDVTSWNALIKGY 258
           D+F+  SL++FYA CG V + R LFD  L+R+V SW +LI GY
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGY 206



 Score = 41.6 bits (96), Expect(2) = 5e-13
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +3

Query: 12  GYSPNNYTFPFLLKACNQLMDLNLGLGIHGIVI 110
           G  P+ YTFPFLL AC++++ L+ G+ +HG V+
Sbjct: 125 GIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157