BLASTX nr result
ID: Coptis25_contig00045274
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00045274 (266 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274379.2| PREDICTED: putative COX1/OXI3 intron 2 prote... 129 2e-28 emb|CBI30076.3| unnamed protein product [Vitis vinifera] 129 2e-28 ref|XP_002533678.1| RNA binding protein, putative [Ricinus commu... 122 2e-26 ref|NP_001154695.1| RNA-directed DNA polymerase (reverse transcr... 119 3e-25 ref|NP_196025.5| RNA-directed DNA polymerase (reverse transcript... 119 3e-25 >ref|XP_002274379.2| PREDICTED: putative COX1/OXI3 intron 2 protein-like [Vitis vinifera] Length = 757 Score = 129 bits (324), Expect = 2e-28 Identities = 59/89 (66%), Positives = 77/89 (86%), Gaps = 2/89 (2%) Frame = +3 Query: 3 RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDSKEI--SGRVFHKPVKMYAV 176 RG PQEC L +IL+N+YF+GFDKE+QD+R++ ++ NPRFDS E+ VF+KPVK+YAV Sbjct: 239 RGFPQECGLSSILINVYFNGFDKEIQDLRIRTNQENPRFDSNEVLSGSSVFYKPVKIYAV 298 Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLE 263 RYLDEIL++TSGSKMLT++LKNQV+ FLE Sbjct: 299 RYLDEILVITSGSKMLTMDLKNQVMKFLE 327 >emb|CBI30076.3| unnamed protein product [Vitis vinifera] Length = 677 Score = 129 bits (324), Expect = 2e-28 Identities = 59/89 (66%), Positives = 77/89 (86%), Gaps = 2/89 (2%) Frame = +3 Query: 3 RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDSKEI--SGRVFHKPVKMYAV 176 RG PQEC L +IL+N+YF+GFDKE+QD+R++ ++ NPRFDS E+ VF+KPVK+YAV Sbjct: 215 RGFPQECGLSSILINVYFNGFDKEIQDLRIRTNQENPRFDSNEVLSGSSVFYKPVKIYAV 274 Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLE 263 RYLDEIL++TSGSKMLT++LKNQV+ FLE Sbjct: 275 RYLDEILVITSGSKMLTMDLKNQVMKFLE 303 >ref|XP_002533678.1| RNA binding protein, putative [Ricinus communis] gi|223526429|gb|EEF28708.1| RNA binding protein, putative [Ricinus communis] Length = 751 Score = 122 bits (307), Expect = 2e-26 Identities = 56/90 (62%), Positives = 76/90 (84%), Gaps = 2/90 (2%) Frame = +3 Query: 3 RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDSKEISGR--VFHKPVKMYAV 176 +GLPQEC LC IL+NIYF+GFDKE+Q IRL++ + NP+F+ E+S R KP+K+YA+ Sbjct: 233 KGLPQECGLCPILINIYFNGFDKEIQQIRLRISEQNPKFEPNEVSERSNSSFKPLKVYAI 292 Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLEE 266 RYLDEIL++TSGSKMLT++LK++V+ FLEE Sbjct: 293 RYLDEILVITSGSKMLTMDLKSKVLKFLEE 322 >ref|NP_001154695.1| RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana] gi|332003308|gb|AED90691.1| RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana] Length = 695 Score = 119 bits (298), Expect = 3e-25 Identities = 55/90 (61%), Positives = 72/90 (80%), Gaps = 2/90 (2%) Frame = +3 Query: 3 RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDS--KEISGRVFHKPVKMYAV 176 RG PQEC LC+IL+N+YF G DKE+QD+RLK+ NPR + +E +G VF KPV +YAV Sbjct: 240 RGFPQECGLCSILINVYFDGLDKEIQDLRLKMKVKNPRVGTGDEESTGNVFFKPVNIYAV 299 Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLEE 266 RYLDEIL++TSGSKMLT++LK ++V LE+ Sbjct: 300 RYLDEILVITSGSKMLTMDLKKRIVDILEQ 329 >ref|NP_196025.5| RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana] gi|332003307|gb|AED90690.1| RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana] Length = 600 Score = 119 bits (298), Expect = 3e-25 Identities = 55/90 (61%), Positives = 72/90 (80%), Gaps = 2/90 (2%) Frame = +3 Query: 3 RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDS--KEISGRVFHKPVKMYAV 176 RG PQEC LC+IL+N+YF G DKE+QD+RLK+ NPR + +E +G VF KPV +YAV Sbjct: 240 RGFPQECGLCSILINVYFDGLDKEIQDLRLKMKVKNPRVGTGDEESTGNVFFKPVNIYAV 299 Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLEE 266 RYLDEIL++TSGSKMLT++LK ++V LE+ Sbjct: 300 RYLDEILVITSGSKMLTMDLKKRIVDILEQ 329