BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045274
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274379.2| PREDICTED: putative COX1/OXI3 intron 2 prote...   129   2e-28
emb|CBI30076.3| unnamed protein product [Vitis vinifera]              129   2e-28
ref|XP_002533678.1| RNA binding protein, putative [Ricinus commu...   122   2e-26
ref|NP_001154695.1| RNA-directed DNA polymerase (reverse transcr...   119   3e-25
ref|NP_196025.5| RNA-directed DNA polymerase (reverse transcript...   119   3e-25

>ref|XP_002274379.2| PREDICTED: putative COX1/OXI3 intron 2 protein-like [Vitis
           vinifera]
          Length = 757

 Score =  129 bits (324), Expect = 2e-28
 Identities = 59/89 (66%), Positives = 77/89 (86%), Gaps = 2/89 (2%)
 Frame = +3

Query: 3   RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDSKEI--SGRVFHKPVKMYAV 176
           RG PQEC L +IL+N+YF+GFDKE+QD+R++ ++ NPRFDS E+     VF+KPVK+YAV
Sbjct: 239 RGFPQECGLSSILINVYFNGFDKEIQDLRIRTNQENPRFDSNEVLSGSSVFYKPVKIYAV 298

Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLE 263
           RYLDEIL++TSGSKMLT++LKNQV+ FLE
Sbjct: 299 RYLDEILVITSGSKMLTMDLKNQVMKFLE 327


>emb|CBI30076.3| unnamed protein product [Vitis vinifera]
          Length = 677

 Score =  129 bits (324), Expect = 2e-28
 Identities = 59/89 (66%), Positives = 77/89 (86%), Gaps = 2/89 (2%)
 Frame = +3

Query: 3   RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDSKEI--SGRVFHKPVKMYAV 176
           RG PQEC L +IL+N+YF+GFDKE+QD+R++ ++ NPRFDS E+     VF+KPVK+YAV
Sbjct: 215 RGFPQECGLSSILINVYFNGFDKEIQDLRIRTNQENPRFDSNEVLSGSSVFYKPVKIYAV 274

Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLE 263
           RYLDEIL++TSGSKMLT++LKNQV+ FLE
Sbjct: 275 RYLDEILVITSGSKMLTMDLKNQVMKFLE 303


>ref|XP_002533678.1| RNA binding protein, putative [Ricinus communis]
           gi|223526429|gb|EEF28708.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 751

 Score =  122 bits (307), Expect = 2e-26
 Identities = 56/90 (62%), Positives = 76/90 (84%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDSKEISGR--VFHKPVKMYAV 176
           +GLPQEC LC IL+NIYF+GFDKE+Q IRL++ + NP+F+  E+S R     KP+K+YA+
Sbjct: 233 KGLPQECGLCPILINIYFNGFDKEIQQIRLRISEQNPKFEPNEVSERSNSSFKPLKVYAI 292

Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLEE 266
           RYLDEIL++TSGSKMLT++LK++V+ FLEE
Sbjct: 293 RYLDEILVITSGSKMLTMDLKSKVLKFLEE 322


>ref|NP_001154695.1| RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis
           thaliana] gi|332003308|gb|AED90691.1| RNA-directed DNA
           polymerase (reverse transcriptase) [Arabidopsis
           thaliana]
          Length = 695

 Score =  119 bits (298), Expect = 3e-25
 Identities = 55/90 (61%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDS--KEISGRVFHKPVKMYAV 176
           RG PQEC LC+IL+N+YF G DKE+QD+RLK+   NPR  +  +E +G VF KPV +YAV
Sbjct: 240 RGFPQECGLCSILINVYFDGLDKEIQDLRLKMKVKNPRVGTGDEESTGNVFFKPVNIYAV 299

Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLEE 266
           RYLDEIL++TSGSKMLT++LK ++V  LE+
Sbjct: 300 RYLDEILVITSGSKMLTMDLKKRIVDILEQ 329


>ref|NP_196025.5| RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis
           thaliana] gi|332003307|gb|AED90690.1| RNA-directed DNA
           polymerase (reverse transcriptase) [Arabidopsis
           thaliana]
          Length = 600

 Score =  119 bits (298), Expect = 3e-25
 Identities = 55/90 (61%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
 Frame = +3

Query: 3   RGLPQECSLCAILVNIYFSGFDKELQDIRLKLDKMNPRFDS--KEISGRVFHKPVKMYAV 176
           RG PQEC LC+IL+N+YF G DKE+QD+RLK+   NPR  +  +E +G VF KPV +YAV
Sbjct: 240 RGFPQECGLCSILINVYFDGLDKEIQDLRLKMKVKNPRVGTGDEESTGNVFFKPVNIYAV 299

Query: 177 RYLDEILLVTSGSKMLTLELKNQVVSFLEE 266
           RYLDEIL++TSGSKMLT++LK ++V  LE+
Sbjct: 300 RYLDEILVITSGSKMLTMDLKKRIVDILEQ 329