BLASTX nr result
ID: Coptis25_contig00045234
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00045234
(233 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003628710.1| Pentatricopeptide repeat-containing protein ... 130 1e-28
ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat... 130 1e-28
ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat... 129 2e-28
ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat... 129 3e-28
ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [S... 124 8e-27
>ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 748
Score = 130 bits (327), Expect = 1e-28
Identities = 60/77 (77%), Positives = 69/77 (89%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
YTFGSVLTACGG++ALQ GKQ+HAYIIRTDYKDNIFV SALVDMY KC +I+ AE VFK+
Sbjct: 276 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKK 335
Query: 181 MVHKNIVSWTSLLVGYG 231
M KN+VSWT++LVGYG
Sbjct: 336 MTCKNVVSWTAMLVGYG 352
Score = 67.4 bits (163), Expect = 1e-09
Identities = 30/76 (39%), Positives = 49/76 (64%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
+T GSV+++C L +L+ G Q HA + + I V +ALV +Y KCGSI + ++F +
Sbjct: 377 FTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE 436
Query: 181 MVHKNIVSWTSLLVGY 228
+ K+ V+WT+L+ GY
Sbjct: 437 ISFKDEVTWTALVSGY 452
Score = 63.2 bits (152), Expect = 2e-08
Identities = 29/74 (39%), Positives = 47/74 (63%)
Frame = +1
Query: 4 TFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQM 183
TF ++L ++ G+QIH ++++ + +FVGS LVDMYSK G I A KVF ++
Sbjct: 145 TFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDEL 204
Query: 184 VHKNIVSWTSLLVG 225
KN+V + +L++G
Sbjct: 205 PEKNVVMYNTLIMG 218
>ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 130 bits (326), Expect = 1e-28
Identities = 60/77 (77%), Positives = 70/77 (90%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
YTFGSVLTACGG++ALQ GKQ+HAYIIRTDY+DNIFVGSALVDMY KC SI+ AE VF++
Sbjct: 275 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRK 334
Query: 181 MVHKNIVSWTSLLVGYG 231
M KN+VSWT++LVGYG
Sbjct: 335 MNCKNVVSWTAMLVGYG 351
Score = 66.2 bits (160), Expect = 3e-09
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
+T GSV+++C L +L+ G Q H + + I V +ALV +Y KCGSI + ++F +
Sbjct: 376 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE 435
Query: 181 MVHKNIVSWTSLLVGY 228
M + + VSWT+L+ GY
Sbjct: 436 MSYVDEVSWTALVSGY 451
Score = 55.8 bits (133), Expect = 3e-06
Identities = 23/57 (40%), Positives = 38/57 (66%)
Frame = +1
Query: 55 GKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQMVHKNIVSWTSLLVG 225
G Q+H ++++ ++ +FVGS LVDMYSK G + A + F +M KN+V + +L+ G
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAG 217
>ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative
pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 129 bits (325), Expect = 2e-28
Identities = 57/77 (74%), Positives = 70/77 (90%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
+TFGSVLTACGG LAL GKQIHAYIIRTDY+DNIFVGSAL+DMY KC ++++AE VF++
Sbjct: 271 FTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRK 330
Query: 181 MVHKNIVSWTSLLVGYG 231
M HKN++SWT++LVGYG
Sbjct: 331 MRHKNVISWTAMLVGYG 347
Score = 68.2 bits (165), Expect = 7e-10
Identities = 29/76 (38%), Positives = 49/76 (64%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
+T GSV+++C L +L+ G Q H + + + V +AL+ +Y KCGS+ HA ++F +
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHE 431
Query: 181 MVHKNIVSWTSLLVGY 228
M ++ VSWT+L+ GY
Sbjct: 432 MKIRDEVSWTALVSGY 447
Score = 59.7 bits (143), Expect = 2e-07
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +1
Query: 4 TFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQM 183
TF ++L + G+QIH I + Y+ +FVGS LVDMY+K G I A ++F+++
Sbjct: 140 TFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEI 199
Query: 184 VHKNIVSWTSLLVG 225
KNIV + +++ G
Sbjct: 200 PEKNIVVYNTMITG 213
>ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3|
unnamed protein product [Vitis vinifera]
Length = 743
Score = 129 bits (323), Expect = 3e-28
Identities = 59/77 (76%), Positives = 69/77 (89%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
+TFGSVLTACG LLAL GKQIHAY+IRTD+KDN+FVGSALVDMYSKC SI+ AE VFK+
Sbjct: 271 FTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKR 330
Query: 181 MVHKNIVSWTSLLVGYG 231
M KN++SWT++LVGYG
Sbjct: 331 MPQKNVISWTAMLVGYG 347
Score = 65.5 bits (158), Expect = 4e-09
Identities = 29/76 (38%), Positives = 48/76 (63%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
+T GSV+++C L +L+ G Q H + + I V +AL+ +Y KCGS ++ ++F +
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTE 431
Query: 181 MVHKNIVSWTSLLVGY 228
M ++ VSWT+LL GY
Sbjct: 432 MNIRDEVSWTALLAGY 447
Score = 58.2 bits (139), Expect = 7e-07
Identities = 26/74 (35%), Positives = 45/74 (60%)
Frame = +1
Query: 4 TFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQM 183
TF ++L C + G+QI+ I++ + ++FVGS LVDMY+K G I A++ F +M
Sbjct: 140 TFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEM 199
Query: 184 VHKNIVSWTSLLVG 225
+N+V +++ G
Sbjct: 200 PERNVVMCNTMITG 213
>ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein
SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 124 bits (311), Expect = 8e-27
Identities = 58/77 (75%), Positives = 67/77 (87%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
YTFGS+LTACG L AL+ GKQIHAYIIRT Y DN+FVGSALVDMYSKC SI+ AE VF++
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRR 332
Query: 181 MVHKNIVSWTSLLVGYG 231
M KNI+SWT+L+VGYG
Sbjct: 333 MTCKNIISWTALIVGYG 349
Score = 68.9 bits (167), Expect = 4e-10
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +1
Query: 1 YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
YT GSV+++C L +L+ G Q H + + I V +ALV +Y KCGSI A ++F +
Sbjct: 374 YTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE 433
Query: 181 MVHKNIVSWTSLLVGY 228
M + VSWT+L+ GY
Sbjct: 434 MSFHDQVSWTALVSGY 449