BLASTX nr result

ID: Coptis25_contig00045234 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045234
         (233 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003628710.1| Pentatricopeptide repeat-containing protein ...   130   1e-28
ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat...   130   1e-28
ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat...   129   2e-28
ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat...   129   3e-28
ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [S...   124   8e-27

>ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355522732|gb|AET03186.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  130 bits (327), Expect = 1e-28
 Identities = 60/77 (77%), Positives = 69/77 (89%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           YTFGSVLTACGG++ALQ GKQ+HAYIIRTDYKDNIFV SALVDMY KC +I+ AE VFK+
Sbjct: 276 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKK 335

Query: 181 MVHKNIVSWTSLLVGYG 231
           M  KN+VSWT++LVGYG
Sbjct: 336 MTCKNVVSWTAMLVGYG 352



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/76 (39%), Positives = 49/76 (64%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           +T GSV+++C  L +L+ G Q HA  + +     I V +ALV +Y KCGSI  + ++F +
Sbjct: 377 FTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE 436

Query: 181 MVHKNIVSWTSLLVGY 228
           +  K+ V+WT+L+ GY
Sbjct: 437 ISFKDEVTWTALVSGY 452



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/74 (39%), Positives = 47/74 (63%)
 Frame = +1

Query: 4   TFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQM 183
           TF ++L        ++ G+QIH ++++  +   +FVGS LVDMYSK G I  A KVF ++
Sbjct: 145 TFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDEL 204

Query: 184 VHKNIVSWTSLLVG 225
             KN+V + +L++G
Sbjct: 205 PEKNVVMYNTLIMG 218


>ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  130 bits (326), Expect = 1e-28
 Identities = 60/77 (77%), Positives = 70/77 (90%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           YTFGSVLTACGG++ALQ GKQ+HAYIIRTDY+DNIFVGSALVDMY KC SI+ AE VF++
Sbjct: 275 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRK 334

Query: 181 MVHKNIVSWTSLLVGYG 231
           M  KN+VSWT++LVGYG
Sbjct: 335 MNCKNVVSWTAMLVGYG 351



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/76 (39%), Positives = 48/76 (63%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           +T GSV+++C  L +L+ G Q H   + +     I V +ALV +Y KCGSI  + ++F +
Sbjct: 376 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE 435

Query: 181 MVHKNIVSWTSLLVGY 228
           M + + VSWT+L+ GY
Sbjct: 436 MSYVDEVSWTALVSGY 451



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 38/57 (66%)
 Frame = +1

Query: 55  GKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQMVHKNIVSWTSLLVG 225
           G Q+H ++++  ++  +FVGS LVDMYSK G +  A + F +M  KN+V + +L+ G
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAG 217


>ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
           gi|449493520|ref|XP_004159329.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  129 bits (325), Expect = 2e-28
 Identities = 57/77 (74%), Positives = 70/77 (90%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           +TFGSVLTACGG LAL  GKQIHAYIIRTDY+DNIFVGSAL+DMY KC ++++AE VF++
Sbjct: 271 FTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRK 330

Query: 181 MVHKNIVSWTSLLVGYG 231
           M HKN++SWT++LVGYG
Sbjct: 331 MRHKNVISWTAMLVGYG 347



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 29/76 (38%), Positives = 49/76 (64%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           +T GSV+++C  L +L+ G Q H   + +     + V +AL+ +Y KCGS+ HA ++F +
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHE 431

Query: 181 MVHKNIVSWTSLLVGY 228
           M  ++ VSWT+L+ GY
Sbjct: 432 MKIRDEVSWTALVSGY 447



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/74 (37%), Positives = 45/74 (60%)
 Frame = +1

Query: 4   TFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQM 183
           TF ++L        +  G+QIH  I +  Y+  +FVGS LVDMY+K G I  A ++F+++
Sbjct: 140 TFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEI 199

Query: 184 VHKNIVSWTSLLVG 225
             KNIV + +++ G
Sbjct: 200 PEKNIVVYNTMITG 213


>ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3|
           unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  129 bits (323), Expect = 3e-28
 Identities = 59/77 (76%), Positives = 69/77 (89%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           +TFGSVLTACG LLAL  GKQIHAY+IRTD+KDN+FVGSALVDMYSKC SI+ AE VFK+
Sbjct: 271 FTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKR 330

Query: 181 MVHKNIVSWTSLLVGYG 231
           M  KN++SWT++LVGYG
Sbjct: 331 MPQKNVISWTAMLVGYG 347



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 48/76 (63%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           +T GSV+++C  L +L+ G Q H   + +     I V +AL+ +Y KCGS  ++ ++F +
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTE 431

Query: 181 MVHKNIVSWTSLLVGY 228
           M  ++ VSWT+LL GY
Sbjct: 432 MNIRDEVSWTALLAGY 447



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/74 (35%), Positives = 45/74 (60%)
 Frame = +1

Query: 4   TFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQM 183
           TF ++L  C     +  G+QI+  I++  +  ++FVGS LVDMY+K G I  A++ F +M
Sbjct: 140 TFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEM 199

Query: 184 VHKNIVSWTSLLVG 225
             +N+V   +++ G
Sbjct: 200 PERNVVMCNTMITG 213


>ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
           gi|241932394|gb|EES05539.1| hypothetical protein
           SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  124 bits (311), Expect = 8e-27
 Identities = 58/77 (75%), Positives = 67/77 (87%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           YTFGS+LTACG L AL+ GKQIHAYIIRT Y DN+FVGSALVDMYSKC SI+ AE VF++
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRR 332

Query: 181 MVHKNIVSWTSLLVGYG 231
           M  KNI+SWT+L+VGYG
Sbjct: 333 MTCKNIISWTALIVGYG 349



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/76 (42%), Positives = 47/76 (61%)
 Frame = +1

Query: 1   YTFGSVLTACGGLLALQHGKQIHAYIIRTDYKDNIFVGSALVDMYSKCGSIRHAEKVFKQ 180
           YT GSV+++C  L +L+ G Q H   + +     I V +ALV +Y KCGSI  A ++F +
Sbjct: 374 YTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE 433

Query: 181 MVHKNIVSWTSLLVGY 228
           M   + VSWT+L+ GY
Sbjct: 434 MSFHDQVSWTALVSGY 449


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