BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045184
         (250 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   119   3e-25
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         119   3e-25
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   119   3e-25
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   117   1e-24
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   116   2e-24

>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
           gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
           polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  119 bits (298), Expect = 3e-25
 Identities = 55/83 (66%), Positives = 70/83 (84%)
 Frame = +2

Query: 2   GHLNFEGLKLLSNKCMVKGLPSIDNPGHLCEGCLLGKHPRKSFPQEATFRARKPLELVHT 181
           GHLNF GL+LLS K MV+GLP I++P  +CEGCLLGK  + SFP+E++ RA+KPLEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHT 532

Query: 182 DVCGPIKPVSLGQNIYFLVFGDN 250
           DVCGPIKP SLG++ YFL+F D+
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDD 555


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  119 bits (298), Expect = 3e-25
 Identities = 55/83 (66%), Positives = 70/83 (84%)
 Frame = +2

Query: 2   GHLNFEGLKLLSNKCMVKGLPSIDNPGHLCEGCLLGKHPRKSFPQEATFRARKPLELVHT 181
           GHLNF GL+LLS K MV+GLP I++P  +CEGCLLGK  + SFP+E++ RA+KPLEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHT 532

Query: 182 DVCGPIKPVSLGQNIYFLVFGDN 250
           DVCGPIKP SLG++ YFL+F D+
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDD 555


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  119 bits (298), Expect = 3e-25
 Identities = 55/83 (66%), Positives = 70/83 (84%)
 Frame = +2

Query: 2   GHLNFEGLKLLSNKCMVKGLPSIDNPGHLCEGCLLGKHPRKSFPQEATFRARKPLELVHT 181
           GHLNF GL+LLS K MV+GLP I++P  +CEGCLLGK  + SFP+E++ RA+KPLEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHT 532

Query: 182 DVCGPIKPVSLGQNIYFLVFGDN 250
           DVCGPIKP SLG++ YFL+F D+
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDD 555


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
           thaliana]
          Length = 1272

 Score =  117 bits (293), Expect = 1e-24
 Identities = 54/83 (65%), Positives = 69/83 (83%)
 Frame = +2

Query: 2   GHLNFEGLKLLSNKCMVKGLPSIDNPGHLCEGCLLGKHPRKSFPQEATFRARKPLELVHT 181
           GHLNF GL+LLS K MV+GLP I++P  +CEGCLLG   + SFP+E++ RA+KPLEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHT 532

Query: 182 DVCGPIKPVSLGQNIYFLVFGDN 250
           DVCGPIKP SLG++ YFL+F D+
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDD 555


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  116 bits (290), Expect = 2e-24
 Identities = 54/83 (65%), Positives = 69/83 (83%)
 Frame = +2

Query: 2   GHLNFEGLKLLSNKCMVKGLPSIDNPGHLCEGCLLGKHPRKSFPQEATFRARKPLELVHT 181
           GHLNF GL+LLS K MV+GLP I++P  +CEGCLLGK  + SFP+E++ RA+K LEL+HT
Sbjct: 473 GHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHT 532

Query: 182 DVCGPIKPVSLGQNIYFLVFGDN 250
           DVCGPIKP SLG++ YFL+F D+
Sbjct: 533 DVCGPIKPKSLGKSNYFLLFIDD 555