BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045151
         (221 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    60   2e-07
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...    57   1e-06

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
 Frame = -1

Query: 212 KKKGKANVEASFAS-GSEVE-DVSLCVSTSQYYMVDRWILDSGCSYHMCPNRK*FAFYES 39
           +KK K   +A+ A   S+VE D+SL VS S    +D WILDSGC+YHMCP R  F  ++ 
Sbjct: 188 QKKEKVLQDANVAECKSDVESDISLIVSLSASLYLDEWILDSGCTYHMCPIRDWFFEFQE 247

Query: 38  ID--------DHAYKTVGIG 3
           +D        D+  KTVGIG
Sbjct: 248 LDGGVVYMGNDNPCKTVGIG 267


>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
 Frame = -1

Query: 212 KKKGKANVEASFAS-GSEVE-DVSLCVSTSQYYMVDRWILDSGCSYHMCPNRK*FAFYES 39
           +KK K   +A+ A   S+VE D+SL VS S     D WILDSGC+YHMCP R  F  ++ 
Sbjct: 227 QKKEKVPQDANVAECKSDVESDISLIVSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQE 286

Query: 38  ID--------DHAYKTVGIG 3
           +D        D+  KT GIG
Sbjct: 287 LDGGVVYMGNDNPCKTAGIG 306