BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045033
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    50   7e-08
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    46   5e-06
ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|2...    53   6e-06
ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|2...    53   6e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 50.4 bits (119), Expect(2) = 7e-08
 Identities = 31/84 (36%), Positives = 45/84 (53%)
 Frame = -3

Query: 310  DSVILRFWDGNPRPRRAPSIKQCYWIPPDNNIIKLNTDGSSMGNPGPSGIGIVFRNCLGE 131
            DS IL  +  +PR R+   I    W  P   ++K+NTDGS +G  G +  G +FR+  G 
Sbjct: 991  DSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGS 1048

Query: 130  FLLTLWQNIGVGTNFRTQCLAIIV 59
            FL     NIG+ + F  + LA I+
Sbjct: 1049 FLGAFSCNIGLASVFHAETLAFIL 1072



 Score = 30.8 bits (68), Expect(2) = 7e-08
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 56   VETALHKGWKQLWVESDS 3
            +E A H GW+ LW+ESDS
Sbjct: 1074 LEHAAHHGWRNLWLESDS 1091


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 46.2 bits (108), Expect(2) = 5e-06
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = -3

Query: 259 PSIKQCYWIPPDNNIIKLNTDGSSMGNPGPSGIGIVFRNCLG 134
           P I    W PP  + IKLN++G++ G PG +G+G +FRNC G
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRG 43



 Score = 28.9 bits (63), Expect(2) = 5e-06
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -2

Query: 137 GRIPSHFVAEYWSGHKLQNSVSSNYCGVETALHKGWKQLWVESDS 3
           G +   F+    + +     + +   G++ A + GW ++W+ESDS
Sbjct: 43  GVVKGCFIVPLSTTYAFVAEIKAAIYGIDKAYNFGWNKIWLESDS 87


>ref|XP_002314708.1| predicted protein [Populus trichocarpa] gi|222863748|gb|EEF00879.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 53.1 bits (126), Expect(2) = 6e-06
 Identities = 29/76 (38%), Positives = 40/76 (52%)
 Frame = -3

Query: 283 GNPRPRRAPSIKQCYWIPPDNNIIKLNTDGSSMGNPGPSGIGIVFRNCLGEFLLTLWQNI 104
           GN   R +    Q  W  P    IKLN DG S GNPG +G G V R+ LG ++    +NI
Sbjct: 61  GNDEGRSSKEDTQVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNI 120

Query: 103 GVGTNFRTQCLAIIVG 56
           G+ ++   +  A+ VG
Sbjct: 121 GICSSVNAELWAVYVG 136



 Score = 21.6 bits (44), Expect(2) = 6e-06
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 65  YCGVETALHKGWKQLWVESDS 3
           Y G++ A  +G++++ +ESDS
Sbjct: 134 YVGLQLAWDRGFRKVDLESDS 154


>ref|XP_002309989.1| predicted protein [Populus trichocarpa] gi|222852892|gb|EEE90439.1|
           predicted protein [Populus trichocarpa]
          Length = 245

 Score = 53.1 bits (126), Expect(2) = 6e-06
 Identities = 29/76 (38%), Positives = 40/76 (52%)
 Frame = -3

Query: 283 GNPRPRRAPSIKQCYWIPPDNNIIKLNTDGSSMGNPGPSGIGIVFRNCLGEFLLTLWQNI 104
           GN   R +    Q  W  P    IKLN DG S GNPG +G G V R+ LG ++    +NI
Sbjct: 61  GNDEGRSSKEDTQVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNI 120

Query: 103 GVGTNFRTQCLAIIVG 56
           G+ ++   +  A+ VG
Sbjct: 121 GICSSVNAELWAVYVG 136



 Score = 21.6 bits (44), Expect(2) = 6e-06
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 65  YCGVETALHKGWKQLWVESDS 3
           Y G++ A  +G++++ +ESDS
Sbjct: 134 YVGLQLAWDRGFRKVDLESDS 154