BLASTX nr result

ID: Coptis25_contig00045004 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00045004
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago tr...    81   1e-13
ref|XP_002331231.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    76   2e-12
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    76   3e-12

>gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago truncatula]
          Length = 814

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 38/96 (39%), Positives = 57/96 (59%)
 Frame = -1

Query: 288 WNVRGINDPHKGWEVNKFRMERKLSLLALVETKVKYAQFASISSICCPNWSCLDNYTRCS 109
           WNVRG N P K  E+  F ++ K  +  LVET++K  +F  ISS+    W  L+NY   +
Sbjct: 523 WNVRGCNKPFKQKEIKNFLLKNKFDMCILVETRIKADKFNKISSMIFKRWPVLNNYDSAA 582

Query: 108 SGRIWVCWDASLWYVQKIRDIDQFIHCQVCFLPTAD 1
           +GRIWV W+ ++  V+ I    Q IHC+V  L +++
Sbjct: 583 NGRIWVSWNPTVLDVKPIASSAQAIHCEVDNLTSSE 618


>ref|XP_002331231.1| predicted protein [Populus trichocarpa] gi|222873417|gb|EEF10548.1|
           predicted protein [Populus trichocarpa]
          Length = 130

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 40/97 (41%), Positives = 55/97 (56%)
 Frame = -1

Query: 297 ISVWNVRGINDPHKGWEVNKFRMERKLSLLALVETKVKYAQFASISSICCPNWSCLDNYT 118
           I  WNVRG+NDP K   + +   + +++L ALVET+V++    ++S +   NWS L NY 
Sbjct: 3   IGCWNVRGLNDPIKHSALRRLIHQERITLFALVETRVRHKNKDNVSQLLLRNWSFLYNYD 62

Query: 117 RCSSGRIWVCWDASLWYVQKIRDIDQFIHCQVCFLPT 7
               GRIWVCW+A    V  +   DQ IH  V  L T
Sbjct: 63  FSCRGRIWVCWNADTVKVDVLGMSDQAIHVSVTILAT 99


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 39/97 (40%), Positives = 53/97 (54%)
 Frame = -1

Query: 297 ISVWNVRGINDPHKGWEVNKFRMERKLSLLALVETKVKYAQFASISSICCPNWSCLDNYT 118
           I  WN+RG+NDP K  E+ +   + +++L  LVET+VK     ++S +   +WS L NY 
Sbjct: 3   IGCWNIRGLNDPIKHSELRRLIHQERIALFGLVETRVKDKNKDNVSQLLLRSWSFLYNYD 62

Query: 117 RCSSGRIWVCWDASLWYVQKIRDIDQFIHCQVCFLPT 7
               GRIWVCW+A    V      DQ IH  V  L T
Sbjct: 63  FSCRGRIWVCWNADTVKVDVFGMSDQAIHVSVTILAT 99


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
           predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 38/97 (39%), Positives = 54/97 (55%)
 Frame = -1

Query: 297 ISVWNVRGINDPHKGWEVNKFRMERKLSLLALVETKVKYAQFASISSICCPNWSCLDNYT 118
           I  WN+RG+NDP K  E+++   + +++L  LVET+VK     ++S +   +WS L NY 
Sbjct: 457 IGCWNIRGLNDPIKHSELHRLIHQERITLFGLVETRVKDKNKDNVSQLLLRSWSFLYNYD 516

Query: 117 RCSSGRIWVCWDASLWYVQKIRDIDQFIHCQVCFLPT 7
               GRIWVCW+A    V      D+ IH  V  L T
Sbjct: 517 FSCRGRIWVCWNADTVKVDVFGMSDEAIHVSVTILAT 553


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 38/97 (39%), Positives = 53/97 (54%)
 Frame = -1

Query: 297  ISVWNVRGINDPHKGWEVNKFRMERKLSLLALVETKVKYAQFASISSICCPNWSCLDNYT 118
            I  WN+RG+NDP K  E+ +   + +++L  LVET+VK     +++ +   +WS L NY 
Sbjct: 808  IGCWNIRGLNDPIKHSELRRLIHQERIALFGLVETRVKDKNKYNVTQLLLRSWSFLYNYD 867

Query: 117  RCSSGRIWVCWDASLWYVQKIRDIDQFIHCQVCFLPT 7
                GRIWVCW+A    V      DQ IH  V  L T
Sbjct: 868  FSCRGRIWVCWNADTVKVDVFGMSDQAIHVSVTILAT 904



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 35/91 (38%), Positives = 49/91 (53%)
 Frame = -1

Query: 279 RGINDPHKGWEVNKFRMERKLSLLALVETKVKYAQFASISSICCPNWSCLDNYTRCSSGR 100
           RG+NDP K  E+ +   + +++L  LVET+VK     +++ +   +WS L NY     GR
Sbjct: 533 RGLNDPIKHSELRRLIHQERIALFGLVETRVKDKNKDNVTQLLLRSWSFLYNYDFSCRGR 592

Query: 99  IWVCWDASLWYVQKIRDIDQFIHCQVCFLPT 7
           IWVCW+A    V      DQ IH  V  L T
Sbjct: 593 IWVCWNADTVKVDVFGMSDQAIHVSVTILAT 623


Top