BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044377
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB42059.1| Tpv2-1c [Phaseolus vulgaris]                          120   9e-26
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   119   3e-25
gb|ABW74566.1| integrase [Boechera divaricarpa]                       117   1e-24
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat...   116   2e-24
emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera]   116   2e-24

>emb|CAB42059.1| Tpv2-1c [Phaseolus vulgaris]
          Length = 374

 Score =  120 bits (302), Expect = 9e-26
 Identities = 62/119 (52%), Positives = 82/119 (68%)
 Frame = -3

Query: 360 LYTKKNS*GEILIASIYVDDLIFIGDGVRMFQGFKRCMMQTFEMTNLGLPHFFLRIEVEQ 181
           LY K N  G ++  ++YVDDLIF+G+   M + FK  M + FEMT+LGL  FFL +EV Q
Sbjct: 44  LYAKNNG-GNMIFVALYVDDLIFMGNNNDMIEEFKGTMRREFEMTDLGLMKFFLGLEVRQ 102

Query: 180 KEDGIVVSQKKYTKELLERFRMENATPISTPMDVGLKLSISDGKLMVNPKLYQSLVGGL 4
           KE GI VSQ+KY KE+L++++MEN  P+S PM+ G KLS  DG   V+   Y+SLVG L
Sbjct: 103 KETGIFVSQEKYAKEILKKYKMENCNPVSIPMEPGAKLSKFDGGERVDASRYRSLVGSL 161


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  119 bits (298), Expect = 3e-25
 Identities = 59/120 (49%), Positives = 82/120 (68%)
 Frame = -3

Query: 363  TLYTKKNS*GEILIASIYVDDLIFIGDGVRMFQGFKRCMMQTFEMTNLGLPHFFLRIEVE 184
            TLY KK    E L+  +YVDD+I+IG    +   FK  MM+ FEM++LGL  +FL +EV 
Sbjct: 996  TLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVI 1055

Query: 183  QKEDGIVVSQKKYTKELLERFRMENATPISTPMDVGLKLSISDGKLMVNPKLYQSLVGGL 4
            Q +DGI +SQKKY ++LL++F+M N    +TPM++  KL  +DG    NPKL++SLVGGL
Sbjct: 1056 QDKDGIFISQKKYAEDLLKKFQMMNCEVATTPMNINEKLQRADGTEKANPKLFRSLVGGL 1115


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  117 bits (292), Expect = 1e-24
 Identities = 58/121 (47%), Positives = 79/121 (65%)
 Frame = -3

Query: 363  TLYTKKNS*GEILIASIYVDDLIFIGDGVRMFQGFKRCMMQTFEMTNLGLPHFFLRIEVE 184
            TLY KK   G+IL+  +YVDD+I++G    +   FK  MM+ FEMT+LGL +FFL +EV+
Sbjct: 827  TLYIKKQGAGDILVVCLYVDDMIYMGSSASLVSEFKASMMEKFEMTDLGLLYFFLGLEVK 886

Query: 183  QKEDGIVVSQKKYTKELLERFRMENATPISTPMDVGLKLSISDGKLMVNPKLYQSLVGGL 4
            Q EDG+ VSQ KY  +LL+RF M     + TPM+V  KL   DG    +   ++SLVGGL
Sbjct: 887  QVEDGVFVSQHKYACDLLKRFDMAGCNAVETPMNVNEKLLAGDGTEKADATKFRSLVGGL 946

Query: 3    V 1
            +
Sbjct: 947  I 947


>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108708461|gb|ABF96256.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1167

 Score =  116 bits (291), Expect = 2e-24
 Identities = 57/121 (47%), Positives = 84/121 (69%)
 Frame = -3

Query: 363  TLYTKKNS*GEILIASIYVDDLIFIGDGVRMFQGFKRCMMQTFEMTNLGLPHFFLRIEVE 184
            TLY  K    +ILI S+YVDDLI+ G+  +M Q FKR MM T+EM++LGL H+FL +EV 
Sbjct: 855  TLYINKTG-TDILIVSLYVDDLIYTGNSEKMMQDFKRDMMHTYEMSDLGLLHYFLGMEVH 913

Query: 183  QKEDGIVVSQKKYTKELLERFRMENATPISTPMDVGLKLSISDGKLMVNPKLYQSLVGGL 4
            Q ++GI +SQ+KY + +L++F+M+N   ++TP+    K    DG   V+P +Y+SLVG L
Sbjct: 914  QSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKVDPTIYRSLVGSL 973

Query: 3    V 1
            +
Sbjct: 974  L 974


>emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera]
          Length = 1041

 Score =  116 bits (290), Expect = 2e-24
 Identities = 54/121 (44%), Positives = 84/121 (69%)
 Frame = -3

Query: 363  TLYTKKNS*GEILIASIYVDDLIFIGDGVRMFQGFKRCMMQTFEMTNLGLPHFFLRIEVE 184
            TL+ K    G++ I  +YVDDLI+ G+   MF+ FK+ MM  FEM++LG+ H+FL IE+ 
Sbjct: 779  TLFIKIEDGGKMHIVCLYVDDLIYTGNNTAMFESFKKSMMAEFEMSDLGMMHYFLGIEMM 838

Query: 183  QKEDGIVVSQKKYTKELLERFRMENATPISTPMDVGLKLSISDGKLMVNPKLYQSLVGGL 4
            Q   GI++SQKKY  E+L+RF+M++  P++TP + G+KL+  +G   V+  LY+ +VG L
Sbjct: 839  QYSTGILISQKKYVGEILDRFQMKDCNPVNTPSEFGMKLNKDNGGKKVDDTLYKQIVGSL 898

Query: 3    V 1
            +
Sbjct: 899  M 899