BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044339
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               63   3e-08
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...    63   3e-08
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    61   1e-07
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    59   5e-07
gb|AAD22330.1| putative non-LTR retroelement reverse transcripta...    59   5e-07

>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/65 (46%), Positives = 40/65 (61%)
 Frame = +1

Query: 196 FVMIMEILNSLLQTGLQRRDFKPHPSCKTTKVTHLCFADDVLIFIQGYEDSIWGLKLILD 375
           FV++M++L+  L  G     F  HP+C    +THL FADDVL+F  G   SI G+  ILD
Sbjct: 704 FVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILD 763

Query: 376 DFSRG 390
           DF +G
Sbjct: 764 DFRQG 768


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/65 (46%), Positives = 40/65 (61%)
 Frame = +1

Query: 196 FVMIMEILNSLLQTGLQRRDFKPHPSCKTTKVTHLCFADDVLIFIQGYEDSIWGLKLILD 375
           FV++M++L+  L  G     F  HP+C    +THL FADDVL+F  G   SI G+  ILD
Sbjct: 661 FVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILD 720

Query: 376 DFSRG 390
           DF +G
Sbjct: 721 DFRQG 725


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +1

Query: 196  FVMIMEILNSLLQTGLQRRDFKPHPSCKTTKVTHLCFADDVLIFIQGYEDSIWGLKLILD 375
            FV+ M +L+ ++      R+   HP CK   +THLCFADD+++FI G + S+ G+  I  
Sbjct: 809  FVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFK 868

Query: 376  DFS--RGYRSAAEPKQIYHQDGSHL 444
            DF+   G   + E   +Y  + S L
Sbjct: 869  DFAGKSGLHISLEKSTLYLAEVSEL 893


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/63 (39%), Positives = 39/63 (61%)
 Frame = +1

Query: 196  FVMIMEILNSLLQTGLQRRDFKPHPSCKTTKVTHLCFADDVLIFIQGYEDSIWGLKLILD 375
            FV+ M +L+++L  G   + F  HP C+   +THLCFADD+++F  G   S+ G+  I  
Sbjct: 922  FVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFK 981

Query: 376  DFS 384
            DF+
Sbjct: 982  DFA 984


>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 631

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = +1

Query: 196 FVMIMEILNSLLQTGLQRRDFKPHPSCKTTKVTHLCFADDVLIFIQGYEDSIWGLKLILD 375
           FV+ M +L+ ++     RR+   HP CK   +THLCF DD+++FI G + SI G+  I  
Sbjct: 237 FVICMNVLSHMIDEAAVRRNIGYHPKCKKLSLTHLCFVDDLMVFIDGQQRSIEGVINIFH 296

Query: 376 DFS--RGYRSAAEPKQIY 423
           +F+   G   + E   +Y
Sbjct: 297 EFAGKSGLHISLEKSTLY 314