BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044296
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420...    82   4e-17
ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|2...    85   8e-17
ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein hel...    81   8e-17
ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] g...    81   8e-17
ref|XP_002879976.1| hypothetical protein ARALYDRAFT_483318 [Arab...    82   8e-17

>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
           putative [Ricinus communis]
          Length = 1809

 Score = 82.4 bits (202), Expect(2) = 4e-17
 Identities = 42/59 (71%), Positives = 48/59 (81%)
 Frame = -2

Query: 301 PEDLTRDLLLEKWRADLIHSAATILDKNIFVKCDWKTGYFQVKGLGCIASYYYITH*TM 125
           P+ LTRD+ LE+ RADLIHS+ATILDKN  VK D K+GYFQV  LG IASYYYITH T+
Sbjct: 604 PDVLTRDITLEERRADLIHSSATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTI 662



 Score = 30.4 bits (67), Expect(2) = 4e-17
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 6/34 (17%)
 Frame = -3

Query: 108 RLFSL----KYVRVKQDEMMELA--LERITIGLE 25
           RLFSL    KYV V+QDE MELA  L+R+ I ++
Sbjct: 680 RLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIK 713


>ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|222859398|gb|EEE96945.1|
            predicted protein [Populus trichocarpa]
          Length = 2175

 Score = 85.1 bits (209), Expect(2) = 8e-17
 Identities = 44/59 (74%), Positives = 48/59 (81%)
 Frame = -2

Query: 301  PEDLTRDLLLEKWRADLIHSAATILDKNIFVKCDWKTGYFQVKGLGCIASYYYITH*TM 125
            P+ LTRD+ LE+ RADLIHSAATILDKN  VK D K+GYFQV  LG IASYYYITH TM
Sbjct: 964  PDVLTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTM 1022



 Score = 26.6 bits (57), Expect(2) = 8e-17
 Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 4/22 (18%)
 Frame = -3

Query: 105  LFSL----KYVRVKQDEMMELA 52
            LFSL    KYV V+QDE MELA
Sbjct: 1041 LFSLSEEFKYVTVRQDEKMELA 1062


>ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana] gi|334182730|ref|NP_001185050.1| putative U5
            small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana] gi|4836892|gb|AAD30595.1|AC007369_5 Putative
            RNA helicase [Arabidopsis thaliana]
            gi|332191925|gb|AEE30046.1| putative U5 small nuclear
            ribonucleoprotein helicase [Arabidopsis thaliana]
            gi|332191926|gb|AEE30047.1| putative U5 small nuclear
            ribonucleoprotein helicase [Arabidopsis thaliana]
          Length = 2171

 Score = 81.3 bits (199), Expect(2) = 8e-17
 Identities = 41/59 (69%), Positives = 48/59 (81%)
 Frame = -2

Query: 301  PEDLTRDLLLEKWRADLIHSAATILDKNIFVKCDWKTGYFQVKGLGCIASYYYITH*TM 125
            P+ L +D++LE+ RADLIHSAATILDKN  VK D K+GYFQV  LG IASYYYITH T+
Sbjct: 964  PDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTI 1022



 Score = 30.4 bits (67), Expect(2) = 8e-17
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 6/34 (17%)
 Frame = -3

Query: 108  RLFSL----KYVRVKQDEMMELA--LERITIGLE 25
            RLFSL    KYV V+QDE MELA  L+R+ I ++
Sbjct: 1040 RLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIK 1073


>ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata]
            gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 2171

 Score = 81.3 bits (199), Expect(2) = 8e-17
 Identities = 41/59 (69%), Positives = 48/59 (81%)
 Frame = -2

Query: 301  PEDLTRDLLLEKWRADLIHSAATILDKNIFVKCDWKTGYFQVKGLGCIASYYYITH*TM 125
            P+ L +D++LE+ RADLIHSAATILDKN  VK D K+GYFQV  LG IASYYYITH T+
Sbjct: 964  PDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTI 1022



 Score = 30.4 bits (67), Expect(2) = 8e-17
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 6/34 (17%)
 Frame = -3

Query: 108  RLFSL----KYVRVKQDEMMELA--LERITIGLE 25
            RLFSL    KYV V+QDE MELA  L+R+ I ++
Sbjct: 1040 RLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIK 1073


>ref|XP_002879976.1| hypothetical protein ARALYDRAFT_483318 [Arabidopsis lyrata subsp.
            lyrata] gi|297325815|gb|EFH56235.1| hypothetical protein
            ARALYDRAFT_483318 [Arabidopsis lyrata subsp. lyrata]
          Length = 2168

 Score = 81.6 bits (200), Expect(2) = 8e-17
 Identities = 41/65 (63%), Positives = 51/65 (78%)
 Frame = -2

Query: 301  PEDLTRDLLLEKWRADLIHSAATILDKNIFVKCDWKTGYFQVKGLGCIASYYYITH*TMG 122
            P+ L +DLLLE+ RADLIHSAATILDKN  +K D K+G+FQV  LG IASYYYITH T+ 
Sbjct: 965  PDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYITHGTIA 1024

Query: 121  IVSKS 107
              +++
Sbjct: 1025 AYNEN 1029



 Score = 30.0 bits (66), Expect(2) = 8e-17
 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 6/31 (19%)
 Frame = -3

Query: 108  RLFSL----KYVRVKQDEMMELA--LERITI 34
            RLFSL    KYV V+QDE MELA  L+R+ I
Sbjct: 1041 RLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1071