BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044224
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525227.1| pentatricopeptide repeat-containing protein,...    67   1e-09
ref|XP_003635652.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09
emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]    66   3e-09
ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258...    64   1e-08
ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    64   2e-08

>ref|XP_002525227.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535524|gb|EEF37193.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 420

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 33/66 (50%), Positives = 39/66 (59%)
 Frame = -1

Query: 198 LFPQIIKCGLKPNQFXXXXXXXXXXXXXSDKIGWQLHGFCSKYGYEWNVYVGSSLLDMYA 19
           LFPQ++  G +PN F             SD  G  LH FC KYGY  NVYVGS+LLDMYA
Sbjct: 169 LFPQMLTLGFRPNHFTLSSLLKASGVSPSDSNGRLLHAFCIKYGYSCNVYVGSALLDMYA 228

Query: 18  RRGQMK 1
           R G ++
Sbjct: 229 RSGHLE 234


>ref|XP_003635652.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 262

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/65 (49%), Positives = 40/65 (61%)
 Frame = -1

Query: 198 LFPQIIKCGLKPNQFXXXXXXXXXXXXXSDKIGWQLHGFCSKYGYEWNVYVGSSLLDMYA 19
           LFPQ+++ GL+PN F                 G QLH FC KYGY+ +VYVGS+L+DMYA
Sbjct: 176 LFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYA 235

Query: 18  RRGQM 4
           R G M
Sbjct: 236 RCGHM 240


>emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/65 (49%), Positives = 40/65 (61%)
 Frame = -1

Query: 198 LFPQIIKCGLKPNQFXXXXXXXXXXXXXSDKIGWQLHGFCSKYGYEWNVYVGSSLLDMYA 19
           LFPQ+++ GL+PN F                 G QLH FC KYGY+ +VYVGS+L+DMYA
Sbjct: 176 LFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYA 235

Query: 18  RRGQM 4
           R G M
Sbjct: 236 RCGHM 240


>ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/65 (47%), Positives = 39/65 (60%)
 Frame = -1

Query: 198 LFPQIIKCGLKPNQFXXXXXXXXXXXXXSDKIGWQLHGFCSKYGYEWNVYVGSSLLDMYA 19
           LFPQ+++ G +PN F                 G QLH FC KYGY+ +VYVGS+L+DMYA
Sbjct: 176 LFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYA 235

Query: 18  RRGQM 4
           R G M
Sbjct: 236 RCGHM 240


>ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/66 (48%), Positives = 40/66 (60%)
 Frame = -1

Query: 198 LFPQIIKCGLKPNQFXXXXXXXXXXXXXSDKIGWQLHGFCSKYGYEWNVYVGSSLLDMYA 19
           LFP+++  G +PN+F             SD  G QLH F  KYGY+ NV+VGSSLLDMYA
Sbjct: 193 LFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYA 252

Query: 18  RRGQMK 1
           R   M+
Sbjct: 253 RWAHMR 258