BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00044222
         (760 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   260   2e-67
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    257   2e-66
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         243   2e-62
emb|CAN77158.1| hypothetical protein VITISV_019025 [Vitis vinifera]   241   1e-61
emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]   238   1e-60

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  260 bits (665), Expect = 2e-67
 Identities = 127/253 (50%), Positives = 181/253 (71%), Gaps = 4/253 (1%)
 Frame = -3

Query: 749 SHSEALITESRGRIQNRKPHYRERS--RGRSKSRPRNEV-SCYHCGKPGHYKSECRKLKK 579
           +  +ALITE RGR   R  +   RS  RG+SK+R ++ V +CY+C +PGH+K +C   +K
Sbjct: 191 NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRK 250

Query: 578 EQIKEKGGHKHEKDVTAITSDGEDIILFSNCEDACLSVTCHDKDWVIDTGASYHATPRKE 399
            +  E  G K++ +  A+  + ++++LF N E+ C+ ++  + +WV+DT AS+HATP ++
Sbjct: 251 GK-GETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRD 309

Query: 398 FFTSYKSGDFGVVRMGNNDVSKIVGIGDVCIETSVGCTLVLKDVRHVPDLRLNLISAGKL 219
            F  Y +GDFG V+MGN   SKI GIGD+CI+T+VGCTLVLKDVRHVPDLR+NLIS   L
Sbjct: 310 LFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIAL 369

Query: 218 DEEGYINQFGSGEWKLTKGSCVVSRGKRCCTLYKTQTKLCKGSLNAV-EESSTELCHKRL 42
           D +GY + F + +W+LTKGS V+++G    TLY+T  ++C+G LNA  +E S +L HKR+
Sbjct: 370 DRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRM 429

Query: 41  GHMSEKGLQILAK 3
           GHMSEKGLQILAK
Sbjct: 430 GHMSEKGLQILAK 442


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  257 bits (656), Expect = 2e-66
 Identities = 123/253 (48%), Positives = 178/253 (70%), Gaps = 4/253 (1%)
 Frame = -3

Query: 749 SHSEALITESRGRIQNRKP--HYRERSRGRSKSRPRNEV-SCYHCGKPGHYKSECRKLKK 579
           +H +  ITESRGR   R    + R  +RG+SK R +++  +CY+C +PGH+K +C   K+
Sbjct: 192 NHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQPGHFKRDCPNPKR 251

Query: 578 EQIKEKGGHKHEKDVTAITSDGEDIILFSNCEDACLSVTCHDKDWVIDTGASYHATPRKE 399
            +  E  G K++ +  A+  + +D++L  N E+ C+ +   + +WV+DT ASYHATP ++
Sbjct: 252 GK-GESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTESEWVVDTAASYHATPVRD 310

Query: 398 FFTSYKSGDFGVVRMGNNDVSKIVGIGDVCIETSVGCTLVLKDVRHVPDLRLNLISAGKL 219
            F  Y +GD+G V+MGN   SKI GIGD+C +T+VGCTLVLKDVRHVPDLR+NLIS   L
Sbjct: 311 LFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVPDLRMNLISGIAL 370

Query: 218 DEEGYINQFGSGEWKLTKGSCVVSRGKRCCTLYKTQTKLCKGSLNAV-EESSTELCHKRL 42
           D++GY N F + +W+LTKG+ V+++G    TLY+T  ++C+G LNA  EE+S +L HKR+
Sbjct: 371 DQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNAEICQGELNAAHEENSADLWHKRM 430

Query: 41  GHMSEKGLQILAK 3
           GH SEKGLQIL+K
Sbjct: 431 GHTSEKGLQILSK 443


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  243 bits (621), Expect = 2e-62
 Identities = 123/254 (48%), Positives = 167/254 (65%), Gaps = 2/254 (0%)
 Frame = -3

Query: 758 TSSSHSEALITESRGRIQNRKPHYRERSRGRSKSRPR-NEVSCYHCGKPGHYKSECRKLK 582
           TS+S S+ L+T+ RGR  N++   R R + RSKSR R  ++ C++CGK  H K    K K
Sbjct: 191 TSTSQSDILVTDDRGR--NKQKGQRGRDKSRSKSRSRYKDIECHYCGKKSHIKKYSFKWK 248

Query: 581 KEQIKEKGGHKHEKDVTAITSDGEDIILFSNCEDACLSVTCHDKDWVIDTGASYHATPRK 402
           +E+ ++         V  + +D     L   C+D  ++V CH+  W++D+GA+YH TPRK
Sbjct: 249 REKKQDNKDGDTGNQVATVRAD-----LLVACDDNVINVACHETTWIVDSGAAYHVTPRK 303

Query: 401 EFFTSYKSGDFGVVRMGNNDVSKIVGIGDVCIETSVGCTLVLKDVRHVPDLRLNLISAGK 222
           EFFTSY  GDFG +RMGN+   K+ G G VC+ETS G  LVLK+V+H PD+RLNLIS GK
Sbjct: 304 EFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGTKLVLKNVKHAPDIRLNLISTGK 363

Query: 221 LDEEGYINQFGSGEWKLTKGSCVVSRGKRCCTLYKTQTKLCKGSLNAVE-ESSTELCHKR 45
           LD++G+   FG G WK+TKGS VV+RG +   LY  Q+ +   S+N VE E ++EL HKR
Sbjct: 364 LDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSSVSDDSVNVVEKECASELWHKR 423

Query: 44  LGHMSEKGLQILAK 3
           LGHMS KG+  LAK
Sbjct: 424 LGHMSVKGIDYLAK 437


>emb|CAN77158.1| hypothetical protein VITISV_019025 [Vitis vinifera]
          Length = 788

 Score =  241 bits (615), Expect = 1e-61
 Identities = 117/229 (51%), Positives = 166/229 (72%), Gaps = 4/229 (1%)
 Frame = -3

Query: 752 SSHSEALITESRGRIQNRKP---HYRERSRGRSKSRPRNEVSCYHCGKPGHYKSECRKLK 582
           SS++EAL+TE RGR ++RKP   +  ++SRG+SKS+   ++ C +C KPGH K ECRK K
Sbjct: 60  SSNTEALVTERRGRSKSRKPSSDYNCDKSRGKSKSQ--KDIKCLYCDKPGHIKRECRKFK 117

Query: 581 KEQIKEKGGH-KHEKDVTAITSDGEDIILFSNCEDACLSVTCHDKDWVIDTGASYHATPR 405
           +EQ K KG   K +KD+ A+ S+G+ I +   C+DAC+++ C D  WV+DT  S+H T R
Sbjct: 118 REQFKRKGEEQKDDKDIAAVASNGDTINIV--CDDACVNLACQDSTWVVDTTTSFHITAR 175

Query: 404 KEFFTSYKSGDFGVVRMGNNDVSKIVGIGDVCIETSVGCTLVLKDVRHVPDLRLNLISAG 225
           ++FF+SY SG FG V+MGN    +I+G+ DV +ETS+ C LVLKDV+HV ++R +LIS G
Sbjct: 176 RDFFSSYTSGSFGWVKMGNEAKCEIIGMRDVELETSIACKLVLKDVKHVLEMRFSLISVG 235

Query: 224 KLDEEGYINQFGSGEWKLTKGSCVVSRGKRCCTLYKTQTKLCKGSLNAV 78
           KLD+EGY +  G G+WKLTKGS +++RGK+  TLYKT+ +L KG  + V
Sbjct: 236 KLDDEGYHSHLGKGKWKLTKGSLLLARGKKNNTLYKTEARLVKGEQSRV 284


>emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]
          Length = 1302

 Score =  238 bits (607), Expect = 1e-60
 Identities = 122/257 (47%), Positives = 172/257 (66%), Gaps = 5/257 (1%)
 Frame = -3

Query: 758 TSSSHSEALITESRGRIQNRKPHYRERSRGRSKSRPRNEVSCYHCGKPGHYKSECRKLKK 579
           TS S+S   +TE RG  ++R P  R+RS+  SK+     V C++C   GH K  CR+LK+
Sbjct: 55  TSLSNSXPDVTEKRGXSKSRGPKNRDRSK--SKTNKXANVECHYCHLKGHIKKYCRQLKR 112

Query: 578 E----QIKEKGGHKHEKDVTAITSDGEDIILFSNCEDACLSVTCHDKDWVIDTGASYHAT 411
           +    ++KEK      +D    T+  + +I++   +   ++  C +  WVID+GAS HAT
Sbjct: 113 DMKQGKVKEKKNDNGGEDDQVATTTSDFLIVY---DSDVVNFACQETSWVIDSGASIHAT 169

Query: 410 PRKEFFTSYKSGDFGVVRMGNNDVSKIVGIGDVCIETSVGCTLVLKDVRHVPDLRLNLIS 231
           PRK+FFTSY SGDFG VRMGN+  +K +G+GDV +ETS G  L LK+V+H+PD+R+NLIS
Sbjct: 170 PRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLIS 229

Query: 230 AGKLDEEGYINQFGSGEWKLTKGSCVVSRGKRCCTLYKTQTKLCKGSLNAVEESST-ELC 54
            GKLD+EG+ N F   +WKLT+GS  +++G +  +LY  Q ++   S+NAV++ ST EL 
Sbjct: 230 TGKLDDEGFXNTFRDSQWKLTRGSMXIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELW 289

Query: 53  HKRLGHMSEKGLQILAK 3
           H RLGHMSEKGL ILAK
Sbjct: 290 HNRLGHMSEKGLMILAK 306